Recent Advances In Biological Network Analysis

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Recent Advances in Biological Network Analysis

Author : Byung-Jun Yoon
Publisher : Springer Nature
ISBN 13 : 3030571734
Total Pages : 220 pages
Book Rating : 4.0/5 (35 download)

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Book Synopsis Recent Advances in Biological Network Analysis by : Byung-Jun Yoon

Download or read book Recent Advances in Biological Network Analysis written by Byung-Jun Yoon and published by Springer Nature. This book was released on 2021-01-13 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book reviews recent advances in the emerging field of computational network biology with special emphasis on comparative network analysis and network module detection. The chapters in this volume are contributed by leading international researchers in computational network biology and offer in-depth insight on the latest techniques in network alignment, network clustering, and network module detection. Chapters discuss the advantages of the respective techniques and present the current challenges and open problems in the field. Recent Advances in Biological Network Analysis: Comparative Network Analysis and Network Module Detection will serve as a great resource for graduate students, academics, and researchers who are currently working in areas relevant to computational network biology or wish to learn more about the field. Data scientists whose work involves the analysis of graphs, networks, and other types of data with topological structure or relations can also benefit from the book's insights.

Biological Network Analysis

Author : Pietro Hiram Guzzi
Publisher : Academic Press
ISBN 13 : 0128193506
Total Pages : 210 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Biological Network Analysis by : Pietro Hiram Guzzi

Download or read book Biological Network Analysis written by Pietro Hiram Guzzi and published by Academic Press. This book was released on 2020-05-26 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological Network Analysis: Trends, Approaches, Graph Theory, and Algorithms considers three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN), and Human Brain Connectomes. The book's authors discuss various graph theoretic and data analytics approaches used to analyze these networks with respect to available tools, technologies, standards, algorithms and databases for generating, representing and analyzing graphical data. As a wide variety of algorithms have been developed to analyze and compare networks, this book is a timely resource. Presents recent advances in biological network analysis, combining Graph Theory, Graph Analysis, and various network models Discusses three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN) and Human Brain Connectomes Includes a discussion of various graph theoretic and data analytics approaches

Analysis of Biological Networks

Author : Björn H. Junker
Publisher : John Wiley & Sons
ISBN 13 : 1118209915
Total Pages : 278 pages
Book Rating : 4.1/5 (182 download)

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Book Synopsis Analysis of Biological Networks by : Björn H. Junker

Download or read book Analysis of Biological Networks written by Björn H. Junker and published by John Wiley & Sons. This book was released on 2011-09-20 with total page 278 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to biological networks and methods for their analysis Analysis of Biological Networks is the first book of its kind to provide readers with a comprehensive introduction to the structural analysis of biological networks at the interface of biology and computer science. The book begins with a brief overview of biological networks and graph theory/graph algorithms and goes on to explore: global network properties, network centralities, network motifs, network clustering, Petri nets, signal transduction and gene regulation networks, protein interaction networks, metabolic networks, phylogenetic networks, ecological networks, and correlation networks. Analysis of Biological Networks is a self-contained introduction to this important research topic, assumes no expert knowledge in computer science or biology, and is accessible to professionals and students alike. Each chapter concludes with a summary of main points and with exercises for readers to test their understanding of the material presented. Additionally, an FTP site with links to author-provided data for the book is available for deeper study. This book is suitable as a resource for researchers in computer science, biology, bioinformatics, advanced biochemistry, and the life sciences, and also serves as an ideal reference text for graduate-level courses in bioinformatics and biological research.

Weighted Network Analysis

Author : Steve Horvath
Publisher : Springer Science & Business Media
ISBN 13 : 144198819X
Total Pages : 433 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis Weighted Network Analysis by : Steve Horvath

Download or read book Weighted Network Analysis written by Steve Horvath and published by Springer Science & Business Media. This book was released on 2011-04-30 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt: High-throughput measurements of gene expression and genetic marker data facilitate systems biologic and systems genetic data analysis strategies. Gene co-expression networks have been used to study a variety of biological systems, bridging the gap from individual genes to biologically or clinically important emergent phenotypes.

New Frontiers of Network Analysis in Systems Biology

Author : Avi Ma'ayan
Publisher : Springer Science & Business Media
ISBN 13 : 9400743300
Total Pages : 204 pages
Book Rating : 4.4/5 (7 download)

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Book Synopsis New Frontiers of Network Analysis in Systems Biology by : Avi Ma'ayan

Download or read book New Frontiers of Network Analysis in Systems Biology written by Avi Ma'ayan and published by Springer Science & Business Media. This book was released on 2012-06-25 with total page 204 pages. Available in PDF, EPUB and Kindle. Book excerpt: The rapidly developing field of systems biology is influencing many aspects of biological research and is expected to transform biomedicine. Some emerging offshoots and specialized branches in systems biology are receiving particular attention and are becoming highly active areas of research. This collection of invited reviews describes some of the latest cutting-edge experimental and computational advances in these emerging sub-fields of systems biology. In particular, this collection focuses on the study of mammalian embryonic stem cells; new technologies involving mass-spectrometry proteomics; single cell measurements; methods for modeling complex stochastic systems; network-based classification algorithms; and the revolutionary emerging field of systems pharmacology.

Biological Network Analysis

Author : Pietro Hiram Guzzi
Publisher : Elsevier
ISBN 13 : 0128193514
Total Pages : 212 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Biological Network Analysis by : Pietro Hiram Guzzi

Download or read book Biological Network Analysis written by Pietro Hiram Guzzi and published by Elsevier. This book was released on 2020-05-11 with total page 212 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological Network Analysis: Trends, Approaches, Graph Theory, and Algorithms considers three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN), and Human Brain Connectomes. The book's authors discuss various graph theoretic and data analytics approaches used to analyze these networks with respect to available tools, technologies, standards, algorithms and databases for generating, representing and analyzing graphical data. As a wide variety of algorithms have been developed to analyze and compare networks, this book is a timely resource. Presents recent advances in biological network analysis, combining Graph Theory, Graph Analysis, and various network models Discusses three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN) and Human Brain Connectomes Includes a discussion of various graph theoretic and data analytics approaches

Thermodynamic Network Analysis of Biological Systems

Author : J. Schnakenberg
Publisher : Springer Science & Business Media
ISBN 13 : 3642679714
Total Pages : 157 pages
Book Rating : 4.6/5 (426 download)

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Book Synopsis Thermodynamic Network Analysis of Biological Systems by : J. Schnakenberg

Download or read book Thermodynamic Network Analysis of Biological Systems written by J. Schnakenberg and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 157 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first edition of this book was greeted with broad interest from readers en gaged in various disciplines of biophysics. I received many stimulating and en couraging responses, however, some of the book's reviewers wanted to stress the fact that an extensive literature of network theory was not included or reported in the book. But the main aspect of the book is intended to be substantive rather than methodical: networks simply serve as a remedy for doing some first steps in analysing and modelling complex biological systems. For an advanced stage in the investigation of a particular system it may be appropriate to replace the pheno menological network method by more detailed techniques like statistical equations or computer simulations. According to this intention, the second edition of the book has been enlarged by further biological examples for network analysis, not by more network theory. There is a completely new section on a network model for photoreception. For this section I am obliged to J. Tiedge who did most of the detailed calculation and to my colleague Professor Stieve with whom we have had a very fruitful cooperation. Also I would like to mention that this work has been sponsored by the "Deutsche Forschungsgemei nschaft" i n the "Sonderforschungsberei ch 160". Recent results for excitable systems represented by feedback networks have also been included in the second edition, especially for limit cycle networks.

Statistical and Evolutionary Analysis of Biological Networks

Author : Michael P. H. Stumpf
Publisher : World Scientific
ISBN 13 : 1848164335
Total Pages : 179 pages
Book Rating : 4.8/5 (481 download)

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Book Synopsis Statistical and Evolutionary Analysis of Biological Networks by : Michael P. H. Stumpf

Systemic Approaches in Bioinformatics and Computational Systems Biology: Recent Advances

Author : Lecca, Paola
Publisher : IGI Global
ISBN 13 : 1613504365
Total Pages : 471 pages
Book Rating : 4.6/5 (135 download)

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Book Synopsis Systemic Approaches in Bioinformatics and Computational Systems Biology: Recent Advances by : Lecca, Paola

Download or read book Systemic Approaches in Bioinformatics and Computational Systems Biology: Recent Advances written by Lecca, Paola and published by IGI Global. This book was released on 2011-12-31 with total page 471 pages. Available in PDF, EPUB and Kindle. Book excerpt: The convergence of biology and computer science was initially motivated by the need to organize and process a growing number of biological observations resulting from rapid advances in experimental techniques. Today, however, close collaboration between biologists, biochemists, medical researchers, and computer scientists has also generated remarkable benefits for the field of computer science. Systemic Approaches in Bioinformatics and Computational Systems Biology: Recent Advances presents new techniques that have resulted from the application of computer science methods to the organization and interpretation of biological data. The book covers three subject areas: bioinformatics, computational biology, and computational systems biology. It focuses on recent, systemic approaches in computer science and mathematics that have been used to model, simulate, and more generally, experiment with biological phenomena at any scale.

Network Biology

Author : WenJun Zhang
Publisher : Nova Science Publishers
ISBN 13 : 9781626189423
Total Pages : 0 pages
Book Rating : 4.1/5 (894 download)

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Book Synopsis Network Biology by : WenJun Zhang

Download or read book Network Biology written by WenJun Zhang and published by Nova Science Publishers. This book was released on 2013 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological network analysis is a fast moving science. Many core scientific issues; for example, ecological structure, coevolution, coextinction and biodiversity conservation in ecology, cancer development and metabolic regulation in health science, etc., are expected to be addressed by network analysis. Network analysis is becoming the core methodology to treat complex biological systems. With the quick development of this science, more and more papers on biological networks are published. This book includes such theories and methods of network biology as methodology of social network analyses, construction of statistic networks, phylogenetic networks, multi-stable and oscillatory biological networks, creation of real networks with expected degree distribution, forest ecosystem model, etc. Chapters are contributed by 15 scientists from the USA, Canada, New Zealand, China, Sweden, and Spain, in the areas of computational science and life sciences. It will provide researchers with various aspects of the latest advances in network biology. It is a valuable reference for scientists, university teachers and graduate students in biology, health science, ecology, social science, applied mathematics and computational science.

Computational Network Analysis with R

Author : Matthias Dehmer
Publisher : John Wiley & Sons
ISBN 13 : 3527339582
Total Pages : 364 pages
Book Rating : 4.5/5 (273 download)

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Book Synopsis Computational Network Analysis with R by : Matthias Dehmer

Download or read book Computational Network Analysis with R written by Matthias Dehmer and published by John Wiley & Sons. This book was released on 2016-12-12 with total page 364 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new title in the well-established "Quantitative Network Biology" series includes innovative and existing methods for analyzing network data in such areas as network biology and chemoinformatics. With its easy-to-follow introduction to the theoretical background and application-oriented chapters, the book demonstrates that R is a powerful language for statistically analyzing networks and for solving such large-scale phenomena as network sampling and bootstrapping. Written by editors and authors with an excellent track record in the field, this is the ultimate reference for R in Network Analysis.

Functional Coherence of Molecular Networks in Bioinformatics

Author : Mehmet Koyutürk
Publisher : Springer Science & Business Media
ISBN 13 : 9781461403203
Total Pages : 228 pages
Book Rating : 4.4/5 (32 download)

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Book Synopsis Functional Coherence of Molecular Networks in Bioinformatics by : Mehmet Koyutürk

Download or read book Functional Coherence of Molecular Networks in Bioinformatics written by Mehmet Koyutürk and published by Springer Science & Business Media. This book was released on 2011-09-22 with total page 228 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular networks provide descriptions of the organization of various biological processes, including cellular signaling, metabolism, and genetic regulation. Knowledge on molecular networks is commonly used for systems level analysis of biological function; research and method development in this area has grown tremendously in the past few years. This book will provide a detailed review of existing knowledge on the functional characterization of biological networks. In 15 chapters authored by an international group of prolific systems biology and bioinformatics researchers, it will organize, conceptualize, and summarize the existing core of research results and computational methods on understanding biological function from a network perspective.

Statistical and Evolutionary Analysis of Biological Networks

Author : Michael P. H. Stumpf
Publisher : World Scientific
ISBN 13 : 1848164343
Total Pages : 179 pages
Book Rating : 4.8/5 (481 download)

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Book Synopsis Statistical and Evolutionary Analysis of Biological Networks by : Michael P. H. Stumpf

Download or read book Statistical and Evolutionary Analysis of Biological Networks written by Michael P. H. Stumpf and published by World Scientific. This book was released on 2010 with total page 179 pages. Available in PDF, EPUB and Kindle. Book excerpt: Networks provide a very useful way to describe a wide range of different data types in biology, physics and elsewhere. Apart from providing a convenient tool to visualize highly dependent data, networks allow stringent mathematical and statistical analysis. In recent years, much progress has been achieved to interpret various types of biological network data such as transcriptomic, metabolomic and protein interaction data as well as epidemiological data. Of particular interest is to understand the organization, complexity and dynamics of biological networks and how these are influenced by network evolution and functionality. This book reviews and explores statistical, mathematical and evolutionary theory and tools in the understanding of biological networks. The book is divided into comprehensive and self-contained chapters, each of which focuses on an important biological network type, explains concepts and theory and illustrates how these can be used to obtain insight into biologically relevant processes and questions. There are chapters covering metabolic, transcriptomic, protein interaction and epidemiological networks as well as chapters that deal with theoretical and conceptual material. The authors, who contribute to the book, are active, highly regarded and well-known in the network community. Sample Chapter(s). Chapter 1: A Network Analysis Primer (350 KB). Contents: A Network Analysis Primer (M P H Stumpf & C Wiuf); Evolutionary Analysis of Protein Interaction Networks (C Wiuf & O Ratmann); Motifs in Biological Networks (F Schreiber & H SchwAbbermeyer); Bayesian Analysis of Biological Networks: Clusters, Motifs, Cross-Species Correlations (J Berg & M Lnssig); Network Concepts and Epidemiological Models (R R Kao & I Z Kiss); Evolutionary Origin and Consequences of Design Properties of Metabolic Networks (T Pfeiffer & S Bonhoeffer); Protein Interactions from an Evolutionary Perspective (F Pazos & A Valencia); Statistical Null Models for Biological Network Analysis (W P Kelly et al.). Readership: Academics, researchers, postgraduates and advanced undergraduates in bioinformatics. Biologists, mathematicians/statisticians, physicists and computer scientists.

Recent Advances in Rice Research

Author : Mahmood-Ur- Rahman Ansari
Publisher : BoD – Books on Demand
ISBN 13 : 1838810315
Total Pages : 260 pages
Book Rating : 4.8/5 (388 download)

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Book Synopsis Recent Advances in Rice Research by : Mahmood-Ur- Rahman Ansari

Download or read book Recent Advances in Rice Research written by Mahmood-Ur- Rahman Ansari and published by BoD – Books on Demand. This book was released on 2021-03-03 with total page 260 pages. Available in PDF, EPUB and Kindle. Book excerpt: “Recent Advances in Rice Research” is an interdisciplinary book dealing with diverse topics related to recent developments in rice research. The book discusses the latest research activities in the field of hybrid rice, various metabolites produced in rice and its biology, stress studies, and strategies to combat various biotic and abiotic stresses as well as rice economics, value addition, and product development. The book is written by an international team of researchers from all over the globe sharing their results in the field of rice research. I am hopeful that the scientific information available in this book will provide advanced knowledge for rice researchers, students, life scientists, and interested readers on some of the latest developments in rice research.

Recent Advances in Precision Vaccine Discovery & Development

Author : Ofer Levy
Publisher : Frontiers Media SA
ISBN 13 : 2889716589
Total Pages : 335 pages
Book Rating : 4.8/5 (897 download)

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Book Synopsis Recent Advances in Precision Vaccine Discovery & Development by : Ofer Levy

Download or read book Recent Advances in Precision Vaccine Discovery & Development written by Ofer Levy and published by Frontiers Media SA. This book was released on 2021-11-23 with total page 335 pages. Available in PDF, EPUB and Kindle. Book excerpt: Topic Editor Jay Evans is the co-founder, President and CEO of Inimmune Corporation. The other Topic Editors declare no competing interests with regard to the Research Topic subject.

New Frontiers of Network Analysis in Systems Biology

Author : Avi Ma'ayan
Publisher : Springer
ISBN 13 : 9789400743311
Total Pages : 202 pages
Book Rating : 4.7/5 (433 download)

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Book Synopsis New Frontiers of Network Analysis in Systems Biology by : Avi Ma'ayan

Download or read book New Frontiers of Network Analysis in Systems Biology written by Avi Ma'ayan and published by Springer. This book was released on 2012-06-26 with total page 202 pages. Available in PDF, EPUB and Kindle. Book excerpt: The rapidly developing field of systems biology is influencing many aspects of biological research and is expected to transform biomedicine. Some emerging offshoots and specialized branches in systems biology are receiving particular attention and are becoming highly active areas of research. This collection of invited reviews describes some of the latest cutting-edge experimental and computational advances in these emerging sub-fields of systems biology. In particular, this collection focuses on the study of mammalian embryonic stem cells; new technologies involving mass-spectrometry proteomics; single cell measurements; methods for modeling complex stochastic systems; network-based classification algorithms; and the revolutionary emerging field of systems pharmacology.

Recent Advances in Soft Computing

Author : Radek Matoušek
Publisher : Springer
ISBN 13 : 3319978888
Total Pages : 328 pages
Book Rating : 4.3/5 (199 download)

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Book Synopsis Recent Advances in Soft Computing by : Radek Matoušek

Download or read book Recent Advances in Soft Computing written by Radek Matoušek and published by Springer. This book was released on 2018-08-04 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents selected papers from the MENDEL conference that was held in Brno, Czech Republic in June 2017. Consisting of two parts, the book discusses recent advances in soft computing, including intelligent image processing: Part 1 addresses evolutionary computing, swarm intelligence, metaheuristics, and optimization; Part 2 then focuses on neural networks, machine learning, self-organization, fuzzy systems, and advanced statistics. The MENDEL conference was established in 1995 and it bears the name of the scientist and Augustinian priest Gregor J. Mendel, who discovered the famous Laws of Heredity. The main aim of the conference was to create a regular opportunity for students, academics and researchers to exchange their ideas and novel research methods.