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Thermodynamic Network Analysis Of Biological Systems
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Book Synopsis Thermodynamic Network Analysis of Biological Systems by : J. Schnakenberg
Download or read book Thermodynamic Network Analysis of Biological Systems written by J. Schnakenberg and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 157 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first edition of this book was greeted with broad interest from readers en gaged in various disciplines of biophysics. I received many stimulating and en couraging responses, however, some of the book's reviewers wanted to stress the fact that an extensive literature of network theory was not included or reported in the book. But the main aspect of the book is intended to be substantive rather than methodical: networks simply serve as a remedy for doing some first steps in analysing and modelling complex biological systems. For an advanced stage in the investigation of a particular system it may be appropriate to replace the pheno menological network method by more detailed techniques like statistical equations or computer simulations. According to this intention, the second edition of the book has been enlarged by further biological examples for network analysis, not by more network theory. There is a completely new section on a network model for photoreception. For this section I am obliged to J. Tiedge who did most of the detailed calculation and to my colleague Professor Stieve with whom we have had a very fruitful cooperation. Also I would like to mention that this work has been sponsored by the "Deutsche Forschungsgemei nschaft" i n the "Sonderforschungsberei ch 160". Recent results for excitable systems represented by feedback networks have also been included in the second edition, especially for limit cycle networks.
Book Synopsis Thermodynamics in Biology by : Enrico Di Cera
Download or read book Thermodynamics in Biology written by Enrico Di Cera and published by Oxford University Press, USA. This book was released on 2000 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: Enrico Di Cera, a rising star in biophysics, has organized a superb group of authors to write substantial chapters covering the most exciting and central issues relating to the bioenergetic aspects of proteins, nucleic acids, and their interactions. Topics covered in this book are protein and nucleic acid folding and stability, enzyme-substrate interactions, prediction of the affinity of complexes, electrostatics, and non-equilibrium aspects of protein function. The breadth of the topics covered in this book illustrates the growing importance of thermodynamic approaches in the study of biological phenomena. The book should be of wide interest to biophysicists, biochemists, and structural biologists.
Book Synopsis Biological Network Analysis by : Pietro Hiram Guzzi
Download or read book Biological Network Analysis written by Pietro Hiram Guzzi and published by Elsevier. This book was released on 2020-05-11 with total page 212 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological Network Analysis: Trends, Approaches, Graph Theory, and Algorithms considers three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN), and Human Brain Connectomes. The book's authors discuss various graph theoretic and data analytics approaches used to analyze these networks with respect to available tools, technologies, standards, algorithms and databases for generating, representing and analyzing graphical data. As a wide variety of algorithms have been developed to analyze and compare networks, this book is a timely resource. Presents recent advances in biological network analysis, combining Graph Theory, Graph Analysis, and various network models Discusses three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN) and Human Brain Connectomes Includes a discussion of various graph theoretic and data analytics approaches
Book Synopsis Methods in Bioengineering by : Arul Jayaraman
Download or read book Methods in Bioengineering written by Arul Jayaraman and published by Artech House. This book was released on 2009 with total page 329 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This cutting-edge volume provides a detailed look at the two main aspects of systems biology: the design of sophisticated experimental methods and the development of complex models to analyze the data. Focusing on methods that are being used to solve current problems in biomedical science and engineering, this comprehensive, richly illustrated resource shows you how to: design of state-of-the art methods for analyzing biological systems Implement experimental approaches for investigating cellular behavior in health and disease; use algorithms and modeling techniques for quantitatively describing biomedical problems; and integrate experimental and computational approaches for a more complete view of biological systems." --Book Jacket.
Book Synopsis Thermodynamics and Regulation of Biological Processes by : Ingolf Lamprecht
Download or read book Thermodynamics and Regulation of Biological Processes written by Ingolf Lamprecht and published by Walter de Gruyter GmbH & Co KG. This book was released on 2019-07-22 with total page 588 pages. Available in PDF, EPUB and Kindle. Book excerpt: No detailed description available for "Thermodynamics and Regulation of Biological Processes".
Book Synopsis Thermodynamics and Kinetics of Biological Processes by : Ingolf Lamprecht
Download or read book Thermodynamics and Kinetics of Biological Processes written by Ingolf Lamprecht and published by Walter de Gruyter GmbH & Co KG. This book was released on 2019-07-08 with total page 552 pages. Available in PDF, EPUB and Kindle. Book excerpt: No detailed description available for "Thermodynamics and Kinetics of Biological Processes".
Book Synopsis Weighted Network Analysis by : Steve Horvath
Download or read book Weighted Network Analysis written by Steve Horvath and published by Springer Science & Business Media. This book was released on 2011-04-30 with total page 433 pages. Available in PDF, EPUB and Kindle. Book excerpt: High-throughput measurements of gene expression and genetic marker data facilitate systems biologic and systems genetic data analysis strategies. Gene co-expression networks have been used to study a variety of biological systems, bridging the gap from individual genes to biologically or clinically important emergent phenotypes.
Book Synopsis Physics of Bioenergetic Processes by : L. A. Blumenfeld
Download or read book Physics of Bioenergetic Processes written by L. A. Blumenfeld and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 141 pages. Available in PDF, EPUB and Kindle. Book excerpt: According to its definition, synergetics is concerned with the cooperation of indi vidual parts of a system that produces macroscopic temporal, spatial or functional structures. A good deal of the volumes published within this series dealt with the formation of truly macroscopic structures which we can s. ee with our eyes. A common scheme could be developed to understand the formation of many patterns through self-organization. In particular, we have to use concepts which go beyond conventio nal thermodynamics. New ideas became crucial. We have to study kinetic processes, and often few highly excited degrees of freedom play the decisive role in the evo lution of structures. Over the past years it has turned out that quite similar lines of approach apply to a world which at first sight would be classified as "microsco pic". That world consists of processes in which biomolecules are involved. An impor tant example for the problems occurring there is provided by Manfred Eigen's theory of evolution of life at the molecular level (cf. his contribution to Volume 17 of this series). Another important example has been provided by Blumenfeld's book on problems of biological physics (Vol. 7 of this series). There it was proposed to treat biological molecules as machines which, in a certain sense, work through "macros copic" degrees of freedom.
Book Synopsis Molecular Collision Dynamics by : J.M. Bowman
Download or read book Molecular Collision Dynamics written by J.M. Bowman and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 167 pages. Available in PDF, EPUB and Kindle. Book excerpt: This monograph covers a broad spectrum of topics in the very broad field of gas phase molecular collision dynamics. The Introduction previews each of the four fol lowing topics and attempts to sew them together with a common thread. In addition, a brief review of quantum reactive scattering is given there along with some gen eral remarks which highlight the difficulties in doing quantum reactive scatter ing calculations. The chapters are all written by theoreticians who are, of course, experts in the subjects they have written about. Three chapters, the ones by Secrest, Schatz, and the one by Schinke and Bowman deal with non-reactive atom-molecule scattering. Col lectively, they describe nearly the full breadth of scattering methods in use to day, from fully quantum mechanical to semiclassical and quasiclassical. The chapter by Baer is the only one dealing with quantum reactive scattering with the additional complexity of the coupling of two potential energy surfaces. The one simplifying feature of the treatment is that the reaction is constrained to be collinear. Overall, this monograph is mainly a review of the recent advances in the field of molecular collision dynamics, with, however, a considerable amount of new material. It is hoped that workers and students in the field will find reading the mono graph both enlightening and enjoyable.
Book Synopsis The Nature of Biological Systems as Revealed by Thermal Methods by : D Nes L?rinczy
Download or read book The Nature of Biological Systems as Revealed by Thermal Methods written by D Nes L?rinczy and published by Springer. This book was released on 2004 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Nature of Biological Systems as Revealed by Thermal Methods is a guide for experiments using thermal methods. The Editor has used his many years of experience to create a unique resource that will enable others with a less mathematical background, to realize the beauty and power of this tool and to gain a better understanding of biological problems. Biological calorimetry (and of course thermal analysis) is of increasing interest and is not covered thoroughly in other resources. The methods presented are macroscopic, for the rather inhomogeneous material (micromethods are often not possible or not pertinent). This book will help beginners in the field of thermal analysis or calorimetry understand the principles of thermodynamics being applied to biological systems. Biological systems are highly organized and very complex. The water and the different types of weak interactions among the macromolecules make the interpretation of thermal events very difficult. This book includes examples how to handle such problems.; The Nature of Biological Systems as Revealed by Thermal Methods is unique in that it: The book is an invaluable resource for anyone interested in thermodynamics, including practising professionals applying thermal methods to biological problems; researchers and graduate students beginning work using thermal methods; and specialists of thermal analysis starting work on biological problems. In addition, this book will be a useful resource for libraries and institutes as the only book covering quantitative thermal analysis of biological systems.
Book Synopsis Thermodynamic Bases of Biological Processes by : A. I. Zotin
Download or read book Thermodynamic Bases of Biological Processes written by A. I. Zotin and published by Walter de Gruyter. This book was released on 2013-02-06 with total page 316 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Synergetics written by Hermann Haken and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 279 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains most of the invited papers presented at the International Work shop on Synergetics, Schloss E1mau, Bavaria, May 2 to.May 7, 1977. This workshop fol lowed an International Symposium on SynergetiGS at Schloss E1mau, 1972, and an Inter national SUl11l1erschoo1 at Erice, Sicily, 1974. Synergetics is a rather new field of interdisciplinary research which studies the self-organized behavior of systems leading to the formation of structures and func tionings. Indeed the whole universe seems to be organized, with pronounced structures starting from spiral galaxies down to living cells. Furthermore, very many of the most interesting phenomena occur in systems which are far from thermal equilibrium. Synergetics in its present form focusses its attention on those phenomena where dra matic changes occur on a macroscopic scale. Here indeed Synergetics was able to re veal profound analogies between systems in different disciplines ranging from physics to sociology. This volume contains contributions from various fields but the reader will easily discover their cOl11J1on goal. Not only in the natural sciences but also in ecology, sociology, and economy, man is confronted with the problems of complex sys tems. The principles and analogies unearthed by Synergetics will certainly be very he1pfu~ to cope with such difficult problems. I use this opportunity to thank the Vo1kswagenwerk Foundation for its support of the project Synergetics and in particular for sponsoring the International Workshop on Synergetics.
Book Synopsis The Nature of Biological Systems as Revealed by Thermal Methods by : Dénes Lörinczy
Download or read book The Nature of Biological Systems as Revealed by Thermal Methods written by Dénes Lörinczy and published by Springer Science & Business Media. This book was released on 2004-07-20 with total page 368 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Nature of Biological Systems as Revealed by Thermal Methods is a guide for experiments using thermal methods. The Editor has used his many years of experience to create a unique resource that will enable others with a less mathematical background, to realize the beauty and power of this tool and to gain a better understanding of biological problems. Biological calorimetry (and of course thermal analysis) is of increasing interest and is not covered thoroughly in other resources. The methods presented are macroscopic, for the rather inhomogeneous material (micromethods are often not possible or not pertinent). This book will help beginners in the field of thermal analysis or calorimetry understand the principles of thermodynamics being applied to biological systems. Biological systems are highly organized and very complex. The water and the different types of weak interactions among the macromolecules make the interpretation of thermal events very difficult. This book includes examples how to handle such problems. The Nature of Biological Systems as Revealed by Thermal Methods is unique in that it: -has a broad spectrum, from molecules and biochemistry, tissues, and food, to whole organisms; -combines practical problems (food processing, quality control, thermal denaturation of proteins, plants and small insects, etc.) with concrete solutions and interpretation; -provides practical strategies and tools without "dry physics and mathematics"; -initiates the application of thermal methods in new fields (e.g. medicine); -forces the reader to go into more detail of thermodynamics and thermal techniques; -simplifies communication between biologists, medical doctors and experts of thermal analysis. The book is an invaluable resource for anyone interested in thermodynamics, including practising professionals applying thermal methods to biological problems; researchers and graduate students beginning work using thermal methods; and specialists of thermal analysis starting work on biological problems. In addition, this book will be a useful resource for libraries and institutes as the only book covering quantitative thermal analysis of biological systems.
Book Synopsis Evolving Geographical Structures by : Daniel A. Griffith
Download or read book Evolving Geographical Structures written by Daniel A. Griffith and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 487 pages. Available in PDF, EPUB and Kindle. Book excerpt: Proceedings of the NATO Advanced Study Institute, Cappuccini, San Miniato, Italy, July 18-30, 1982
Book Synopsis The Random Spatial Economy and its Evolution by : Leslie Curry
Download or read book The Random Spatial Economy and its Evolution written by Leslie Curry and published by Routledge. This book was released on 2020-07-09 with total page 767 pages. Available in PDF, EPUB and Kindle. Book excerpt: First published in 1998, this volume, spanning a lifetime's research, is a highly innovative first attempt at a consistent theoretical approach to the elements, structures and dynamics of the geography of agents, settlements and trade. Cause and effect are replaced by chance within constraints. Populations are substituted for unreal representative individuals, variability for uniformity, probabilistic process for unique history. Ignorance is a major factor in interpersonal and inter-areal commercial relations so that the focus is on flows of information and their effects on the efficiency of the economy or, alternatively, on changes in its information content. Recent work on spatial arrangements in many physical and social sciences is incorporated but always interpreted from an overriding geographical viewpoint. Key concepts are locational potential, distance friction, mobility, diffusion, spatial pattern and texture, adaptability, efficiency, spatial interaction and dependence. Analytic methods include autocovariance and transfer functions, areal special densities and entropy. Various forms of self-organization of economic spatial patterns are examined.
Book Synopsis Mathematical Technology of Networks by : Delio Mugnolo
Download or read book Mathematical Technology of Networks written by Delio Mugnolo and published by Springer. This book was released on 2015-07-06 with total page 205 pages. Available in PDF, EPUB and Kindle. Book excerpt: Dynamical models on graphs or random graphs are increasingly used in applied sciences as mathematical tools to study complex systems whose exact structure is too complicated to be known in detail. Besides its importance in applied sciences, the field is increasingly attracting the interest of mathematicians and theoretical physicists also because of the fundamental phenomena (synchronization, phase transitions etc.) that can be studied in the relatively simple framework of dynamical models of random graphs. This volume was developed from the Mathematical Technology of Networks conference held in Bielefeld, Germany in December 2013. The conference was designed to bring together functional analysts, mathematical physicists, and experts in dynamical systems. The contributors to this volume explore the interplay between theoretical and applied aspects of discrete and continuous graphs. Their work helps to close the gap between different avenues of research on graphs, including metric graphs and ramified structures.
Book Synopsis Structural Stability in Physics by : G. Güttinger
Download or read book Structural Stability in Physics written by G. Güttinger and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 309 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is the record and product of two International Symposia on the Appli cation of Catastrophe Theory and Topological Concepts in Physics, held in May and December 1978 at the Institute for Information Sciences, University of TUbingen. The May Symposium centered around the conferral of an honorary doctorate upon Professor Rene Thom, Paris, by the Faculty of Physics of the University of TUbingen in recognition of his discovery of universal structure principles and the new di mension he has added to scientific knowledge by his pioneering work on structural stability and morphogenesis. Owing to the broad scope and rapid development of the field, the May Sympos,ium was followed in December by a second one on the same sub jects. The symposia, attended by more than 50 scientists, brought together mathe maticians, physicists, chemists and biologists to exchange ideas about the recent faSCinating impact of topological concepts on the physical sciences, and also to introduce young scientists to the field. The contributions, covering a wide spectrum, are summarized in the subsequent Introduction. The primary support of the Symposia was provided by the "Vereinigung der Freunde der Univertat TUbingen" (Association of the Benefactors of the University). We are particularly indebted to Dr. H. Doerner for his personal engagement and efficient help with the projects, both in his capacity as Secretary of the Association and as Administrative Director of the University.
