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Introductory Fisheries Analyses With R
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Book Synopsis Introductory Fisheries Analyses with R by : Derek H. Ogle
Download or read book Introductory Fisheries Analyses with R written by Derek H. Ogle and published by CRC Press. This book was released on 2018-09-03 with total page 317 pages. Available in PDF, EPUB and Kindle. Book excerpt: A How-To Guide for Conducting Common Fisheries-Related Analyses in R Introductory Fisheries Analyses with R provides detailed instructions on performing basic fisheries stock assessment analyses in the R environment. Accessible to practicing fisheries scientists as well as advanced undergraduate and graduate students, the book demonstrates the flexibility and power of R, offers insight into the reproducibility of script-based analyses, and shows how the use of R leads to more efficient and productive work in fisheries science. The first three chapters present a minimal introduction to the R environment that builds a foundation for the fisheries-specific analyses in the remainder of the book. These chapters help you become familiar with R for basic fisheries analyses and graphics. Subsequent chapters focus on methods to analyze age comparisons, age-length keys, size structure, weight-length relationships, condition, abundance (from capture-recapture and depletion data), mortality rates, individual growth, and the stock-recruit relationship. The fundamental statistical methods of linear regression, analysis of variance (ANOVA), and nonlinear regression are demonstrated within the contexts of these common fisheries analyses. For each analysis, the author completely explains the R functions and provides sufficient background information so that you can confidently implement each method. Web Resource The author’s website at http://derekogle.com/IFAR/ includes the data files and R code for each chapter, enabling you to reproduce the results in the book as well as create your own scripts. The site also offers supplemental code for more advanced analyses and practice exercises for every chapter.
Book Synopsis Introductory Fisheries Analyses with R by : Derek H. Ogle
Download or read book Introductory Fisheries Analyses with R written by Derek H. Ogle and published by . This book was released on 2016 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Introductory Fisheries Analyses with R by : Derek H. Ogle
Download or read book Introductory Fisheries Analyses with R written by Derek H. Ogle and published by CRC Press. This book was released on 2018-09-03 with total page 389 pages. Available in PDF, EPUB and Kindle. Book excerpt: A How-To Guide for Conducting Common Fisheries-Related Analyses in R Introductory Fisheries Analyses with R provides detailed instructions on performing basic fisheries stock assessment analyses in the R environment. Accessible to practicing fisheries scientists as well as advanced undergraduate and graduate students, the book demonstrates the flexibility and power of R, offers insight into the reproducibility of script-based analyses, and shows how the use of R leads to more efficient and productive work in fisheries science. The first three chapters present a minimal introduction to the R environment that builds a foundation for the fisheries-specific analyses in the remainder of the book. These chapters help you become familiar with R for basic fisheries analyses and graphics. Subsequent chapters focus on methods to analyze age comparisons, age-length keys, size structure, weight-length relationships, condition, abundance (from capture-recapture and depletion data), mortality rates, individual growth, and the stock-recruit relationship. The fundamental statistical methods of linear regression, analysis of variance (ANOVA), and nonlinear regression are demonstrated within the contexts of these common fisheries analyses. For each analysis, the author completely explains the R functions and provides sufficient background information so that you can confidently implement each method. Web Resource The author’s website at http://derekogle.com/IFAR/ includes the data files and R code for each chapter, enabling you to reproduce the results in the book as well as create your own scripts. The site also offers supplemental code for more advanced analyses and practice exercises for every chapter.
Book Synopsis Using R for Modelling and Quantitative Methods in Fisheries by : Malcolm Haddon
Download or read book Using R for Modelling and Quantitative Methods in Fisheries written by Malcolm Haddon and published by CRC Press. This book was released on 2020-08-27 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: Using R for Modelling and Quantitative Methods in Fisheries has evolved and been adapted from an earlier book by the same author and provides a detailed introduction to analytical methods commonly used by fishery scientists, ecologists, and advanced students using the open-source software R as a programming tool. Some knowledge of R is assumed, as this is a book about using R, but an introduction to the development and working of functions, and how one can explore the contents of R functions and packages, is provided. The example analyses proceed step-by-step using code listed in the book and from the book’s companion R package, MQMF, available from GitHub and the standard archive, CRAN. The examples are designed to be simple to modify so the reader can quickly adapt the methods described to use with their own data. A primary aim of the book is to be a useful resource to natural resource practitioners and students. Featured Chapters: Model Parameter Estimation provides a detailed explanation of the requirements and steps involved in fitting models to data, using R and, mainly, maximum likelihood methods. On Uncertainty uses R to implement bootstrapping, likelihood profiles, asymptotic errors, and Bayesian posteriors to characterize any uncertainty in an analysis. The use of the Monte Carlo Markov Chain methodology is examined in some detail. Surplus Production Models applies all the methods examined in the earlier parts of the book to conducting a stock assessment. This included fitting alternative models to the available data, characterizing the uncertainty in different ways, and projecting the optimum models forward in time as the basis for providing useful management advice.
Book Synopsis Quantitative Fisheries Stock Assessment by : R. Hilborn
Download or read book Quantitative Fisheries Stock Assessment written by R. Hilborn and published by Springer Science & Business Media. This book was released on 2013-12-01 with total page 575 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book really began in 1980 with our first microcomputer, an Apple II +. The great value of the Apple II + was that we could take the computer programs we had been building on mainframe and mini-computers, and make them available to the many fisheries biologists who also had Apple II + 's. About 6 months after we got our first Apple, John Glaister came through Vancouver and saw what we were doing and realized that his agency (New South Wales State Fisheries) had the same equipment and could run the same programs. John organized a training course in Australia where we showed about 25 Australian fisheries biologists how to use microcomputers to do many standard fisheries analyses. In the process of organizing this and sub sequent courses we developed a series of lecture notes. Over the last 10 years these notes have evolved into the chapters of this book.
Book Synopsis R for Conservation and Development Projects by : Nathan Whitmore
Download or read book R for Conservation and Development Projects written by Nathan Whitmore and published by CRC Press. This book was released on 2020-12-22 with total page 338 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is aimed at conservation and development practitioners who need to learn and use R in a part-time professional context. It gives people with a non-technical background a set of skills to graph, map, and model in R. It also provides background on data integration in project management and covers fundamental statistical concepts. The book aims to demystify R and give practitioners the confidence to use it. Key Features: • Viewing data science as part of a greater knowledge and decision making system • Foundation sections on inference, evidence, and data integration • Plain English explanations of R functions • Relatable examples which are typical of activities undertaken by conservation and development organisations in the developing world • Worked examples showing how data analysis can be incorporated into project reports
Book Synopsis Marine Fisheries Ecology by : Simon Jennings
Download or read book Marine Fisheries Ecology written by Simon Jennings and published by John Wiley & Sons. This book was released on 2013-04-16 with total page 432 pages. Available in PDF, EPUB and Kindle. Book excerpt: This topical and exciting textbook describes fisheries exploitation, biology, conservation and management, and reflects many recent and important changes in fisheries science. These include growing concerns about the environmental impacts of fisheries, the role of ecological interactions in determining population dynamics, and the incorporation of uncertainty and precautionary principles into management advice. The book draws upon examples from tropical, temperate and polar environments, and provides readers with a broad understanding of the biological, economic and social aspects of fisheries ecology and the interplay between them. As well as covering 'classical' fisheries science, the book focuses on contemporary issues such as industrial fishing, poverty and conflict in fishing communities, marine reserves, the effects of fishing on coral reefs and by-catches of mammals, seabirds and reptiles. The book is primarily written for students of fisheries science and marine ecology, but should also appeal to practicing fisheries scientists and those interested in conservation and the impacts of humans on the marine environment. particularly useful are the modelling chapters which explain the difficult maths involved in a user-friendly manner describes fisheries exploitation, conservation and management in tropical, temperate and polar environments broad coverage of 'clasical' fisheries science emphasis on new approaches to fisheries science and the ecosystem effects of fishing examples based on the latest research and drawn from authors' international experience comprehensively referenced throughout extensively illustrated with photographs and line drawings
Book Synopsis Modelling and Quantitative Methods in Fisheries by : Malcolm Haddon
Download or read book Modelling and Quantitative Methods in Fisheries written by Malcolm Haddon and published by CRC Press. This book was released on 2001-05-31 with total page 428 pages. Available in PDF, EPUB and Kindle. Book excerpt: Quantitative methods and mathematical modelling are of critical importance to fishery science and management but, until now, there has been no book that offers the sharp focus, methodological detail, and practical examples needed by non-specialist fishery scientists and managers, and ecologists. Modelling and Quantitative Methods in Fisheries fills that void. To date, methodology books in fisheries science have been limited to cookbook approach to problems; simple compilations; or expositions in which either too much theory or insufficient methodological detail is given. The text is organized into three sections: an introduction to modelling in fisheries and ecology, a straight methodology section covering a range of methods, and a section focusing on specific fields in fisheries science. This book is timely as it addresses a topic of recent debate in fisheries and ecology, describing and comparing the uses of Least Squares, Maximum Likelihood, and Bayesian quantitative methods. Designed as stand-alone units, each chapter provides examples from both classic and recent literature and comes with dedicated Excel spreadsheets that permit you to delve into every detail of the analysis. All of these spreadsheets serve as active examples, which can easily be modified and customized and can be used as templates for analyzing your own data. The spreadsheets permit you to learn at your own speed and cover the simplest linear regression to the more complex non-linear modelling using maximum likelihood. Data analysis and modelling are best learned by doing and not just by reading. This book illustrates, step by step, the analyses it covers. More detailed in terms of introductory quantitative methods and modelling as applied to fisheries than any other book available, Modelling and Quantitative Methods in Fisheries gives you the advantage by supplying the full details of the analysis so that understanding the material is a matter of following the book.
Book Synopsis Telemetry Techniques by : Noah S. Adams
Download or read book Telemetry Techniques written by Noah S. Adams and published by . This book was released on 2012 with total page 543 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Standard Methods for Sampling North American Freshwater Fishes by : Scott A. Bonar
Download or read book Standard Methods for Sampling North American Freshwater Fishes written by Scott A. Bonar and published by . This book was released on 2009 with total page 368 pages. Available in PDF, EPUB and Kindle. Book excerpt: This was the first effort to standardize methods for inland fish sampling across North America and, as such, was a joint effort contributed to by a large group of talented and dedicated individuals, in addition to the authors and coeditors. While these sampling methods were primarily developed for North America, most could be used with little or no modification in other areas of the world. Those involved with standard sampling efforts in North America would welcome the opportunity to collaborate with scientists from other regions to develop methods to share data worldwide.
Book Synopsis Rights Based Fishing by : P.A. Neher
Download or read book Rights Based Fishing written by P.A. Neher and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 539 pages. Available in PDF, EPUB and Kindle. Book excerpt: The genesis of this conference was on a quay of the port of Bergen in March 1985. Ragnar Amason suggested to Phil Neher a small, mid-Atlantic conference on recent developments in fishery management. In the event, more than twenty papers were scheduled and over one hundred and fifty conferees were registered. Logistical complications were sorted through for a summer 1988 conference in Iceland. The really innovative management programs were in the South Pacific; Aus tralia and New Zealand had introduced Individual Transferable Quotas (ITQs); and Iceland, Norway and Canada were also experimenting with quotas. It seemed to the program committee (Rognvaldur Hannesson and Geoffrey Waugh were soon on board) that these quotas had more or less characteristics of property rights. Property rights were also taking other forms in other places (time and area licenses, restrictive licensing of vessels and gear, traditional use rights). The idea of rights based fishing became the theme of the conference.
Book Synopsis Stock Identification Methods by : Steven X. Cadrin
Download or read book Stock Identification Methods written by Steven X. Cadrin and published by Academic Press. This book was released on 2013-10-04 with total page 588 pages. Available in PDF, EPUB and Kindle. Book excerpt: Stock Identification Methods, 2e, continues to provide a comprehensive review of the various disciplines used to study the population structure of fishery resources. It represents the worldwide experience and perspectives of experts on each method, assembled through a working group of the International Council for the Exploration of the Sea. The book is organized to foster interdisciplinary analyses and conclusions about stock structure, a crucial topic for fishery science and management. Technological advances have promoted the development of stock identification methods in many directions, resulting in a confusing variety of approaches. Based on central tenets of population biology and management needs, this valuable resource offers a unified framework for understanding stock structure by promoting an understanding of the relative merits and sensitivities of each approach. Describes 18 distinct approaches to stock identification grouped into sections on life history traits, environmental signals, genetic analyses, and applied marks Features experts' reviews of benchmark case studies, general protocols, and the strengths and weaknesses of each identification method Reviews statistical techniques for exploring stock patterns, testing for differences among putative stocks, stock discrimination, and stock composition analysis Focuses on the challenges of interpreting data and managing mixed-stock fisheries
Book Synopsis Shifting Baselines by : Jeremy B.C. Jackson
Download or read book Shifting Baselines written by Jeremy B.C. Jackson and published by Island Press. This book was released on 2012-06-22 with total page 312 pages. Available in PDF, EPUB and Kindle. Book excerpt: Shifting Baselines explores the real-world implications of a groundbreaking idea: we must understand the oceans of the past to protect the oceans of the future. In 1995, acclaimed marine biologist Daniel Pauly coined the term "shifting baselines" to describe a phenomenon of lowered expectations, in which each generation regards a progressively poorer natural world as normal. This seminal volume expands on Pauly's work, showing how skewed visions of the past have led to disastrous marine policies and why historical perspective is critical to revitalize fisheries and ecosystems. Edited by marine ecologists Jeremy Jackson and Enric Sala, and historian Karen Alexander, the book brings together knowledge from disparate disciplines to paint a more realistic picture of past fisheries. The authors use case studies on the cod fishery and the connection between sardine and anchovy populations, among others, to explain various methods for studying historic trends and the intricate relationships between species. Subsequent chapters offer recommendations about both specific research methods and effective management. This practical information is framed by inspiring essays by Carl Safina and Randy Olson on a personal experience of shifting baselines and the importance of human stories in describing this phenomenon to a broad public. While each contributor brings a different expertise to bear, all agree on the importance of historical perspective for effective fisheries management. Readers, from students to professionals, will benefit enormously from this informed hindsight.
Book Synopsis Inland Fisheries Management in North America by : Christopher C. Kohler
Download or read book Inland Fisheries Management in North America written by Christopher C. Kohler and published by . This book was released on 1999 with total page 760 pages. Available in PDF, EPUB and Kindle. Book excerpt: "The book covers fishery assessments, habitat and community manipulations, and common practices for managing stream, river, lake, and anadromous fisheries. Chapters on history; ecosystem management; management processes; communications with the public; introduced, undesirable, and endangered species; and the legal and regulatory frameworks provide the context for modern fisheries management." From fisheries.org.
Book Synopsis Age and Growth of Fishes by : Michael Carl Quist
Download or read book Age and Growth of Fishes written by Michael Carl Quist and published by . This book was released on 2017 with total page 359 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Statistics and Data with R by : Yosef Cohen
Download or read book Statistics and Data with R written by Yosef Cohen and published by John Wiley & Sons. This book was released on 2008-11-20 with total page 618 pages. Available in PDF, EPUB and Kindle. Book excerpt: R, an Open Source software, has become the de facto statistical computing environment. It has an excellent collection of data manipulation and graphics capabilities. It is extensible and comes with a large number of packages that allow statistical analysis at all levels – from simple to advanced – and in numerous fields including Medicine, Genetics, Biology, Environmental Sciences, Geology, Social Sciences and much more. The software is maintained and developed by academicians and professionals and as such, is continuously evolving and up to date. Statistics and Data with R presents an accessible guide to data manipulations, statistical analysis and graphics using R. Assuming no previous knowledge of statistics or R, the book includes: A comprehensive introduction to the R language. An integrated approach to importing and preparing data for analysis, exploring and analyzing the data, and presenting results. Over 300 examples, including detailed explanations of the R scripts used throughout. Over 100 moderately large data sets from disciplines ranging from Biology, Ecology and Environmental Science to Medicine, Law, Military and Social Sciences. A parallel discussion of analyses with the normal density, proportions (binomial), counts (Poisson) and bootstrap methods. Two extensive indexes that include references to every R function (and its arguments and packages used in the book) and to every introduced concept.
Download or read book The Carp written by R. Billard and published by Springer Science & Business Media. This book was released on 1999-04-15 with total page 368 pages. Available in PDF, EPUB and Kindle. Book excerpt: As a group, carp provide 4 million metric tonnes of fish annually - over a quarter of all fish culture worldwide. For the first time, a book is available in English that concentrates solely on the carp as an economic rather than an ornamental fish with a panel of international experts producing a comprehensive, practical volume about carp production and management. Starting with a brief look at the biology of cyprinids, the book then discusses the methods and management of carp farming, from water quality to the economics of fish production in ponds. Novel methods to improve stock, including genetic engineering, are covered and case studies give added value to the text. As carp farming turns from traditional to intensive methods, farmers, researchers and technicians in industry will welcome this benchmark volume, which also is a valuable reference book for graduate and postgraduate students and lecturers in aquaculture.
