Using R For Modelling And Quantitative Methods In Fisheries

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Using R for Modelling and Quantitative Methods in Fisheries

Author : Malcolm Haddon
Publisher : CRC Press
ISBN 13 : 1000079236
Total Pages : 353 pages
Book Rating : 4.0/5 ( download)

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Book Synopsis Using R for Modelling and Quantitative Methods in Fisheries by : Malcolm Haddon

Download or read book Using R for Modelling and Quantitative Methods in Fisheries written by Malcolm Haddon and published by CRC Press. This book was released on 2020-08-27 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: Using R for Modelling and Quantitative Methods in Fisheries has evolved and been adapted from an earlier book by the same author and provides a detailed introduction to analytical methods commonly used by fishery scientists, ecologists, and advanced students using the open-source software R as a programming tool. Some knowledge of R is assumed, as this is a book about using R, but an introduction to the development and working of functions, and how one can explore the contents of R functions and packages, is provided. The example analyses proceed step-by-step using code listed in the book and from the book’s companion R package, MQMF, available from GitHub and the standard archive, CRAN. The examples are designed to be simple to modify so the reader can quickly adapt the methods described to use with their own data. A primary aim of the book is to be a useful resource to natural resource practitioners and students. Featured Chapters: Model Parameter Estimation provides a detailed explanation of the requirements and steps involved in fitting models to data, using R and, mainly, maximum likelihood methods. On Uncertainty uses R to implement bootstrapping, likelihood profiles, asymptotic errors, and Bayesian posteriors to characterize any uncertainty in an analysis. The use of the Monte Carlo Markov Chain methodology is examined in some detail. Surplus Production Models applies all the methods examined in the earlier parts of the book to conducting a stock assessment. This included fitting alternative models to the available data, characterizing the uncertainty in different ways, and projecting the optimum models forward in time as the basis for providing useful management advice.

Modelling and Quantitative Methods in Fisheries

Author : Malcolm Haddon
Publisher : CRC Press
ISBN 13 : 9781584881773
Total Pages : 428 pages
Book Rating : 4.8/5 (817 download)

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Book Synopsis Modelling and Quantitative Methods in Fisheries by : Malcolm Haddon

Download or read book Modelling and Quantitative Methods in Fisheries written by Malcolm Haddon and published by CRC Press. This book was released on 2001-05-31 with total page 428 pages. Available in PDF, EPUB and Kindle. Book excerpt: Quantitative methods and mathematical modelling are of critical importance to fishery science and management but, until now, there has been no book that offers the sharp focus, methodological detail, and practical examples needed by non-specialist fishery scientists and managers, and ecologists. Modelling and Quantitative Methods in Fisheries fills that void. To date, methodology books in fisheries science have been limited to cookbook approach to problems; simple compilations; or expositions in which either too much theory or insufficient methodological detail is given. The text is organized into three sections: an introduction to modelling in fisheries and ecology, a straight methodology section covering a range of methods, and a section focusing on specific fields in fisheries science. This book is timely as it addresses a topic of recent debate in fisheries and ecology, describing and comparing the uses of Least Squares, Maximum Likelihood, and Bayesian quantitative methods. Designed as stand-alone units, each chapter provides examples from both classic and recent literature and comes with dedicated Excel spreadsheets that permit you to delve into every detail of the analysis. All of these spreadsheets serve as active examples, which can easily be modified and customized and can be used as templates for analyzing your own data. The spreadsheets permit you to learn at your own speed and cover the simplest linear regression to the more complex non-linear modelling using maximum likelihood. Data analysis and modelling are best learned by doing and not just by reading. This book illustrates, step by step, the analyses it covers. More detailed in terms of introductory quantitative methods and modelling as applied to fisheries than any other book available, Modelling and Quantitative Methods in Fisheries gives you the advantage by supplying the full details of the analysis so that understanding the material is a matter of following the book.

Quantitative Fisheries Stock Assessment

Author : R. Hilborn
Publisher : Springer Science & Business Media
ISBN 13 : 1461535980
Total Pages : 575 pages
Book Rating : 4.4/5 (615 download)

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Book Synopsis Quantitative Fisheries Stock Assessment by : R. Hilborn

Download or read book Quantitative Fisheries Stock Assessment written by R. Hilborn and published by Springer Science & Business Media. This book was released on 2013-12-01 with total page 575 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book really began in 1980 with our first microcomputer, an Apple II +. The great value of the Apple II + was that we could take the computer programs we had been building on mainframe and mini-computers, and make them available to the many fisheries biologists who also had Apple II + 's. About 6 months after we got our first Apple, John Glaister came through Vancouver and saw what we were doing and realized that his agency (New South Wales State Fisheries) had the same equipment and could run the same programs. John organized a training course in Australia where we showed about 25 Australian fisheries biologists how to use microcomputers to do many standard fisheries analyses. In the process of organizing this and sub sequent courses we developed a series of lecture notes. Over the last 10 years these notes have evolved into the chapters of this book.

Using R for Modelling and Quantitative Methods in Fisheries

Author : Malcolm Haddon
Publisher : CRC Press
ISBN 13 : 1000079279
Total Pages : 295 pages
Book Rating : 4.0/5 ( download)

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Book Synopsis Using R for Modelling and Quantitative Methods in Fisheries by : Malcolm Haddon

Download or read book Using R for Modelling and Quantitative Methods in Fisheries written by Malcolm Haddon and published by CRC Press. This book was released on 2020-08-27 with total page 295 pages. Available in PDF, EPUB and Kindle. Book excerpt: Using R for Modelling and Quantitative Methods in Fisheries has evolved and been adapted from an earlier book by the same author and provides a detailed introduction to analytical methods commonly used by fishery scientists, ecologists, and advanced students using the open-source software R as a programming tool. Some knowledge of R is assumed, as this is a book about using R, but an introduction to the development and working of functions, and how one can explore the contents of R functions and packages, is provided. The example analyses proceed step-by-step using code listed in the book and from the book’s companion R package, MQMF, available from GitHub and the standard archive, CRAN. The examples are designed to be simple to modify so the reader can quickly adapt the methods described to use with their own data. A primary aim of the book is to be a useful resource to natural resource practitioners and students. Featured Chapters: Model Parameter Estimation provides a detailed explanation of the requirements and steps involved in fitting models to data, using R and, mainly, maximum likelihood methods. On Uncertainty uses R to implement bootstrapping, likelihood profiles, asymptotic errors, and Bayesian posteriors to characterize any uncertainty in an analysis. The use of the Monte Carlo Markov Chain methodology is examined in some detail. Surplus Production Models applies all the methods examined in the earlier parts of the book to conducting a stock assessment. This included fitting alternative models to the available data, characterizing the uncertainty in different ways, and projecting the optimum models forward in time as the basis for providing useful management advice.

Introductory Fisheries Analyses with R

Author : Derek H. Ogle
Publisher : CRC Press
ISBN 13 : 1482235226
Total Pages : 317 pages
Book Rating : 4.4/5 (822 download)

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Book Synopsis Introductory Fisheries Analyses with R by : Derek H. Ogle

Download or read book Introductory Fisheries Analyses with R written by Derek H. Ogle and published by CRC Press. This book was released on 2016-01-05 with total page 317 pages. Available in PDF, EPUB and Kindle. Book excerpt: A How-To Guide for Conducting Common Fisheries-Related Analyses in R Introductory Fisheries Analyses with R provides detailed instructions on performing basic fisheries stock assessment analyses in the R environment. Accessible to practicing fisheries scientists as well as advanced undergraduate and graduate students, the book demonstrates the flexibility and power of R, offers insight into the reproducibility of script-based analyses, and shows how the use of R leads to more efficient and productive work in fisheries science. The first three chapters present a minimal introduction to the R environment that builds a foundation for the fisheries-specific analyses in the remainder of the book. These chapters help you become familiar with R for basic fisheries analyses and graphics. Subsequent chapters focus on methods to analyze age comparisons, age-length keys, size structure, weight-length relationships, condition, abundance (from capture-recapture and depletion data), mortality rates, individual growth, and the stock-recruit relationship. The fundamental statistical methods of linear regression, analysis of variance (ANOVA), and nonlinear regression are demonstrated within the contexts of these common fisheries analyses. For each analysis, the author completely explains the R functions and provides sufficient background information so that you can confidently implement each method. Web Resource The author’s website at http://derekogle.com/IFAR/ includes the data files and R code for each chapter, enabling you to reproduce the results in the book as well as create your own scripts. The site also offers supplemental code for more advanced analyses and practice exercises for every chapter.

A Practical Guide to Ecological Modelling

Author : Karline Soetaert
Publisher : Springer Science & Business Media
ISBN 13 : 1402086245
Total Pages : 372 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis A Practical Guide to Ecological Modelling by : Karline Soetaert

Download or read book A Practical Guide to Ecological Modelling written by Karline Soetaert and published by Springer Science & Business Media. This book was released on 2008-10-14 with total page 372 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematical modelling is an essential tool in present-day ecological research. Yet for many ecologists it is still problematic to apply modelling in their research. In our experience, the major problem is at the conceptual level: proper understanding of what a model is, how ecological relations can be translated consistently into mathematical equations, how models are solved, steady states calculated and interpreted. Many textbooks jump over these conceptual hurdles to dive into detailed formulations or the mathematics of solution. This book attempts to fill that gap. It introduces essential concepts for mathematical modelling, explains the mathematics behind the methods, and helps readers to implement models and obtain hands-on experience. Throughout the book, emphasis is laid on how to translate ecological questions into interpretable models in a practical way. The book aims to be an introductory textbook at the undergraduate-graduate level, but will also be useful to seduce experienced ecologists into the world of modelling. The range of ecological models treated is wide, from Lotka-Volterra type of principle-seeking models to environmental or ecosystem models, and including matrix models, lattice models and sequential decision models. All chapters contain a concise introduction into the theory, worked-out examples and exercises. All examples are implemented in the open-source package R, thus taking away problems of software availability for use of the book. All code used in the book is available on a dedicated website.

Fishery Co-Management

Author : Robert S. Pomeroy
Publisher : CABI
ISBN 13 : 0851990908
Total Pages : 283 pages
Book Rating : 4.8/5 (519 download)

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Book Synopsis Fishery Co-Management by : Robert S. Pomeroy

Download or read book Fishery Co-Management written by Robert S. Pomeroy and published by CABI. This book was released on 2005 with total page 283 pages. Available in PDF, EPUB and Kindle. Book excerpt: During the last decade, there has been a shift in the governance and management of fisheries to a broaderapproach that recognizes the participation of fishers, local stewardship, and shared decision-making.Through this process, fishers are empowered to become active members of the management team,balancing rights and responsibilities, and working in partnership with government. This approach iscalled co-management.This handbook describes the process of community-based co-management from its beginning, throughimplementation, to turnover to the community. It provides ideas, methods, techniques, activities, checklists,examples, questions and indicators for the planning and implementing of a process of community-basedco-management. It focuses on small-scale fisheries (freshwater, floodplain, estuarine, or marine) indeveloping countries, but is also relevant to small-scale fisheries in developed countries and to themanagement of other coastal resources (such as coral reefs, mangroves, sea grass, and wetlands). Thishandbook will be of significant interest to resource managers, practitioners, academics and students ofsmall-scale fisheries.

Modelling and Quantitative Methods in Fisheries, Second Edition

Author : Malcolm Haddon
Publisher : CRC Press
ISBN 13 : 1420010816
Total Pages : 468 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis Modelling and Quantitative Methods in Fisheries, Second Edition by : Malcolm Haddon

Download or read book Modelling and Quantitative Methods in Fisheries, Second Edition written by Malcolm Haddon and published by CRC Press. This book was released on 2010-02-01 with total page 468 pages. Available in PDF, EPUB and Kindle. Book excerpt: Revised and restructured, Modeling and Quantitative Methods in Fisheries, Second Edition provides an accessible introduction to quantitative methods in fisheries. This book features new material on tests and comparisons as well as new chapters on length-based models and estimating uncertainty using Bayesian methods. It presents a structured, step-by-step approach that introduces the material in a logical sequence. This text covers a range of topics such as simple linear regression, complex nonlinear modeling, methodology, and specific fields in fisheries. It also includes numerous real world examples implemented in Excel, with workbooks for all examples available for download on the web.

Modelling and Quantitative Methods in Fisheries

Author : Malcolm Haddon
Publisher : CRC Press
ISBN 13 : 1439894175
Total Pages : 452 pages
Book Rating : 4.4/5 (398 download)

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Book Synopsis Modelling and Quantitative Methods in Fisheries by : Malcolm Haddon

Download or read book Modelling and Quantitative Methods in Fisheries written by Malcolm Haddon and published by CRC Press. This book was released on 2011-03-11 with total page 452 pages. Available in PDF, EPUB and Kindle. Book excerpt: With numerous real-world examples, Modelling and Quantitative Methods in Fisheries, Second Edition provides an introduction to the analytical methods used by fisheries' scientists and ecologists. By following the examples using Excel, readers see the nuts and bolts of how the methods work and better understand the underlying principles. Excel workb

Ecological Models and Data in R

Author : Benjamin M. Bolker
Publisher : Princeton University Press
ISBN 13 : 0691125228
Total Pages : 408 pages
Book Rating : 4.6/5 (911 download)

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Book Synopsis Ecological Models and Data in R by : Benjamin M. Bolker

Download or read book Ecological Models and Data in R written by Benjamin M. Bolker and published by Princeton University Press. This book was released on 2008-07-21 with total page 408 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduction and background; Exploratory data analysis and graphics; Deterministic functions for ecological modeling; Probability and stochastic distributions for ecological modeling; Stochatsic simulation and power analysis; Likelihood and all that; Optimization and all that; Likelihood examples; Standar statistics revisited; Modeling variance; Dynamic models.

Biology of Sharks and Their Relatives

Author : Jeffrey C. Carrier
Publisher : CRC Press
ISBN 13 : 1000542068
Total Pages : 841 pages
Book Rating : 4.0/5 (5 download)

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Book Synopsis Biology of Sharks and Their Relatives by : Jeffrey C. Carrier

Download or read book Biology of Sharks and Their Relatives written by Jeffrey C. Carrier and published by CRC Press. This book was released on 2022-06-08 with total page 841 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biology of Sharks and Their Relatives is an award-winning and groundbreaking exploration of the fundamental elements of the taxonomy, systematics, physiology, and ecology of sharks, skates, rays, and chimera. This edition presents current research as well as traditional models, to provide future researchers with solid historical foundations in shark research as well as presenting current trends from which to develop new frontiers in their own work. Traditional areas of study such as age and growth, reproduction, taxonomy and systematics, sensory biology, and ecology are updated with contemporary research that incorporates emerging techniques including molecular genetics, exploratory techniques in artificial insemination, and the rapidly expanding fields of satellite tracking, remote sensing, accelerometry, and imaging. With two new editors and 90 contributors from the US, UK, South Africa, Portugal, France, Canada, New Zealand, Australia, India, Palau, United Arab Emirates, Micronesia, Sweden, Argentina, Indonesia, Cameroon, and the Netherlands, this third edition is the most global and comprehensive yet. It adds six new chapters representing extensive studies of health, stress, disease and pathology, and social structure, and continues to explore elasmobranch ecological roles and interactions with their habitats. The book concludes with a comprehensive review of conservation policies, management, and strategies, as well as consideration of the potential effects of impending climate change. Presenting cohesive and integrated coverage of key topics and discussing technological advances used in modern shark research, this revised edition offers a well-rounded picture for students and researchers.

Using R for Introductory Statistics

Author : John Verzani
Publisher : CRC Press
ISBN 13 : 1315360306
Total Pages : 522 pages
Book Rating : 4.3/5 (153 download)

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Book Synopsis Using R for Introductory Statistics by : John Verzani

Download or read book Using R for Introductory Statistics written by John Verzani and published by CRC Press. This book was released on 2018-10-03 with total page 522 pages. Available in PDF, EPUB and Kindle. Book excerpt: The second edition of a bestselling textbook, Using R for Introductory Statistics guides students through the basics of R, helping them overcome the sometimes steep learning curve. The author does this by breaking the material down into small, task-oriented steps. The second edition maintains the features that made the first edition so popular, while updating data, examples, and changes to R in line with the current version. See What’s New in the Second Edition: Increased emphasis on more idiomatic R provides a grounding in the functionality of base R. Discussions of the use of RStudio helps new R users avoid as many pitfalls as possible. Use of knitr package makes code easier to read and therefore easier to reason about. Additional information on computer-intensive approaches motivates the traditional approach. Updated examples and data make the information current and topical. The book has an accompanying package, UsingR, available from CRAN, R’s repository of user-contributed packages. The package contains the data sets mentioned in the text (data(package="UsingR")), answers to selected problems (answers()), a few demonstrations (demo()), the errata (errata()), and sample code from the text. The topics of this text line up closely with traditional teaching progression; however, the book also highlights computer-intensive approaches to motivate the more traditional approach. The authors emphasize realistic data and examples and rely on visualization techniques to gather insight. They introduce statistics and R seamlessly, giving students the tools they need to use R and the information they need to navigate the sometimes complex world of statistical computing.

Quantitative Methods in Tourism

Author : Rodolfo Baggio
Publisher : Channel View Publications
ISBN 13 : 1845411730
Total Pages : 250 pages
Book Rating : 4.8/5 (454 download)

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Book Synopsis Quantitative Methods in Tourism by : Rodolfo Baggio

Download or read book Quantitative Methods in Tourism written by Rodolfo Baggio and published by Channel View Publications. This book was released on 2011 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book goes beyond the methods usually covered in introductory textbooks on quantitative methods in tourism. It considers key issues in data selection, approaches to factor and cluster analysis and regression before covering advanced topics including structural equation modelling, maximum likelihood estimation, simulation and agent-based modelling. The result is a guide to quantitative methods in tourism that de-mystifies both simple and apparently complex techniques and makes them more accessible to tourism researchers.

Fisheries Ecology and Management

Author : Carl J. Walters
Publisher : Princeton University Press
ISBN 13 : 0691214638
Total Pages : 448 pages
Book Rating : 4.6/5 (912 download)

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Book Synopsis Fisheries Ecology and Management by : Carl J. Walters

Download or read book Fisheries Ecology and Management written by Carl J. Walters and published by Princeton University Press. This book was released on 2020-06-30 with total page 448 pages. Available in PDF, EPUB and Kindle. Book excerpt: Quantitative modeling methods have become a central tool in the management of harvested fish populations. This book examines how these modeling methods work, why they sometimes fail, and how they might be improved by incorporating larger ecological interactions. Fisheries Ecology and Management provides a broad introduction to the concepts and quantitative models needed to successfully manage fisheries. Walters and Martell develop models that account for key ecological dynamics such as trophic interactions, food webs, multi-species dynamics, risk-avoidance behavior, habitat selection and density-dependence. They treat fisheries policy development as a two-stage process, first identifying strategies for varying harvest in relation to changes in abundance, then finding ways to implement such strategies in terms of monitoring and regulatory procedures. This book provides a general framework for developing assessment models in terms of state-observation dynamics hypotheses, and points out that most fisheries assessment failures have been due to inappropriate observation model hypotheses rather than faulty models for ecological dynamics. Intended as a text in upper division and graduate classes on fisheries assessment and management, this useful guide will also be widely read by ecologists and fisheries scientists.

Generalized Additive Models

Author : Simon Wood
Publisher : CRC Press
ISBN 13 : 1584884746
Total Pages : 412 pages
Book Rating : 4.5/5 (848 download)

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Book Synopsis Generalized Additive Models by : Simon Wood

Download or read book Generalized Additive Models written by Simon Wood and published by CRC Press. This book was released on 2006-02-27 with total page 412 pages. Available in PDF, EPUB and Kindle. Book excerpt: Now in widespread use, generalized additive models (GAMs) have evolved into a standard statistical methodology of considerable flexibility. While Hastie and Tibshirani's outstanding 1990 research monograph on GAMs is largely responsible for this, there has been a long-standing need for an accessible introductory treatment of the subject that also emphasizes recent penalized regression spline approaches to GAMs and the mixed model extensions of these models. Generalized Additive Models: An Introduction with R imparts a thorough understanding of the theory and practical applications of GAMs and related advanced models, enabling informed use of these very flexible tools. The author bases his approach on a framework of penalized regression splines, and builds a well-grounded foundation through motivating chapters on linear and generalized linear models. While firmly focused on the practical aspects of GAMs, discussions include fairly full explanations of the theory underlying the methods. Use of the freely available R software helps explain the theory and illustrates the practicalities of linear, generalized linear, and generalized additive models, as well as their mixed effect extensions. The treatment is rich with practical examples, and it includes an entire chapter on the analysis of real data sets using R and the author's add-on package mgcv. Each chapter includes exercises, for which complete solutions are provided in an appendix. Concise, comprehensive, and essentially self-contained, Generalized Additive Models: An Introduction with R prepares readers with the practical skills and the theoretical background needed to use and understand GAMs and to move on to other GAM-related methods and models, such as SS-ANOVA, P-splines, backfitting and Bayesian approaches to smoothing and additive modelling.

Quantitative Fish Dynamics

Author : Terrance J. Quinn
Publisher : Oxford University Press, USA
ISBN 13 : 0195076311
Total Pages : 561 pages
Book Rating : 4.1/5 (95 download)

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Book Synopsis Quantitative Fish Dynamics by : Terrance J. Quinn

Download or read book Quantitative Fish Dynamics written by Terrance J. Quinn and published by Oxford University Press, USA. This book was released on 1999 with total page 561 pages. Available in PDF, EPUB and Kindle. Book excerpt: The fields of fish population dynamics and stock assessment have seen major advances in the 1980s and 1990s, creating the need for a new synthesis. This text attempts that synthesis by presenting a contemporary approach for quantitative fisheries science that incorporates modern statistical and mathematical techniques. It emphasizes the link between biology and theory by explaining the assumptions inherent in the quantitative methods and models. The book covers key topics that are often overlooked in other texts, such as optimal harvesting, migratory stocks, and complex age and size-structured models. Quantitative Fish Dynamics is an ideal textbook for graduate and undergraduate courses in fish population dynamics and stock assessment. It is an indispensable reference work for fisheries scientists and others interested in conservation biology, fish and wildlife management, population ecology, and statistical applications.

Management Techniques for Elasmobranch Fisheries

Author : Food and Agriculture Organization of the United Nations
Publisher : Food & Agriculture Org.
ISBN 13 : 9789251054031
Total Pages : 264 pages
Book Rating : 4.0/5 (54 download)

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Book Synopsis Management Techniques for Elasmobranch Fisheries by : Food and Agriculture Organization of the United Nations

Download or read book Management Techniques for Elasmobranch Fisheries written by Food and Agriculture Organization of the United Nations and published by Food & Agriculture Org.. This book was released on 2005 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt: Elasmobranch - describes a group of fish without a hard bony skeleton, including sharks, skates, and rays.