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Angle Based Protein Tertiary Structure Prediction Using Bees Optimization Algorithm
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Book Synopsis Angle Based Protein Tertiary Structure Prediction Using Bees Optimization Algorithm by : Zakaria Noor Aldeen Mahmood Al-qattan
Download or read book Angle Based Protein Tertiary Structure Prediction Using Bees Optimization Algorithm written by Zakaria Noor Aldeen Mahmood Al-qattan and published by . This book was released on 2010 with total page 113 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis A Metaheuristic Approach to Protein Structure Prediction by : Nanda Dulal Jana
Download or read book A Metaheuristic Approach to Protein Structure Prediction written by Nanda Dulal Jana and published by Springer. This book was released on 2018-03-05 with total page 243 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book introduces characteristic features of the protein structure prediction (PSP) problem. It focuses on systematic selection and improvement of the most appropriate metaheuristic algorithm to solve the problem based on a fitness landscape analysis, rather than on the nature of the problem, which was the focus of methodologies in the past. Protein structure prediction is concerned with the question of how to determine the three-dimensional structure of a protein from its primary sequence. Recently a number of successful metaheuristic algorithms have been developed to determine the native structure, which plays an important role in medicine, drug design, and disease prediction. This interdisciplinary book consolidates the concepts most relevant to protein structure prediction (PSP) through global non-convex optimization. It is intended for graduate students from fields such as computer science, engineering, bioinformatics and as a reference for researchers and practitioners.
Book Synopsis Neural Information Processing by : Minho Lee
Download or read book Neural Information Processing written by Minho Lee and published by Springer. This book was released on 2013-10-29 with total page 794 pages. Available in PDF, EPUB and Kindle. Book excerpt: The three volume set LNCS 8226, LNCS 8227 and LNCS 8228 constitutes the proceedings of the 20th International Conference on Neural Information Processing, ICONIP 2013, held in Daegu, Korea, in November 2013. The 180 full and 75 poster papers presented together with 4 extended abstracts were carefully reviewed and selected from numerous submissions. These papers cover all major topics of theoretical research, empirical study and applications of neural information processing research. The specific topics covered are as follows: cognitive science and artificial intelligence; learning theory, algorithms and architectures; computational neuroscience and brain imaging; vision, speech and signal processing; control, robotics and hardware technologies and novel approaches and applications.
Book Synopsis Introduction to Protein Structure Prediction by : Huzefa Rangwala
Download or read book Introduction to Protein Structure Prediction written by Huzefa Rangwala and published by John Wiley & Sons. This book was released on 2011-03-16 with total page 611 pages. Available in PDF, EPUB and Kindle. Book excerpt: A look at the methods and algorithms used to predict protein structure A thorough knowledge of the function and structure of proteins is critical for the advancement of biology and the life sciences as well as the development of better drugs, higher-yield crops, and even synthetic bio-fuels. To that end, this reference sheds light on the methods used for protein structure prediction and reveals the key applications of modeled structures. This indispensable book covers the applications of modeled protein structures and unravels the relationship between pure sequence information and three-dimensional structure, which continues to be one of the greatest challenges in molecular biology. With this resource, readers will find an all-encompassing examination of the problems, methods, tools, servers, databases, and applications of protein structure prediction and they will acquire unique insight into the future applications of the modeled protein structures. The book begins with a thorough introduction to the protein structure prediction problem and is divided into four themes: a background on structure prediction, the prediction of structural elements, tertiary structure prediction, and functional insights. Within those four sections, the following topics are covered: Databases and resources that are commonly used for protein structure prediction The structure prediction flagship assessment (CASP) and the protein structure initiative (PSI) Definitions of recurring substructures and the computational approaches used for solving sequence problems Difficulties with contact map prediction and how sophisticated machine learning methods can solve those problems Structure prediction methods that rely on homology modeling, threading, and fragment assembly Hybrid methods that achieve high-resolution protein structures Parts of the protein structure that may be conserved and used to interact with other biomolecules How the loop prediction problem can be used for refinement of the modeled structures The computational model that detects the differences between protein structure and its modeled mutant Whether working in the field of bioinformatics or molecular biology research or taking courses in protein modeling, readers will find the content in this book invaluable.
Book Synopsis Protein Structure Prediction Using Bee Colony Optimization Metaheuristic by : R. Fonseca
Download or read book Protein Structure Prediction Using Bee Colony Optimization Metaheuristic written by R. Fonseca and published by . This book was released on 2008 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Bio-Inspired Computing for Information Retrieval Applications by : Acharjya, D.P.
Download or read book Bio-Inspired Computing for Information Retrieval Applications written by Acharjya, D.P. and published by IGI Global. This book was released on 2017-02-14 with total page 411 pages. Available in PDF, EPUB and Kindle. Book excerpt: The growing presence of biologically-inspired processing has caused significant changes in data retrieval. With the ubiquity of these technologies, more effective and streamlined data processing techniques are available. Bio-Inspired Computing for Information Retrieval Applications is a key resource on the latest advances and research regarding current techniques that have evolved from biologically-inspired processes and its application to a variety of problems. Highlighting multidisciplinary studies on data processing, swarm-based clustering, and evolutionary computation, this publication is an ideal reference source for researchers, academics, professionals, students, and practitioners.
Book Synopsis Protein Structure by Distance Analysis by : Henrik Bohr
Download or read book Protein Structure by Distance Analysis written by Henrik Bohr and published by . This book was released on 1994 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduction (Henrik Bohr and Soren Brunak). Protein structure prediction (Shankar Subramaniam). Structures from X-Ray Crystallography illustrated by proteins with prosthetic groups (Sine Larsen, Anders Kadziola and Jens F. W. Petersen). Function and three-dimensional structure odf proteins using nuclear magnetic resonance spectroscopy (Flemming M. Poulsen). Experimental aspects of ultr-violet and circular dichroism methods for protein folding (Hans E. M. Christensen, Jan M. Hammerstad-Pedersen, arne Holm, Gitte Iversen and Jens Ulstrup). Probing protein structure by solvent perturbation of NMR spectra: III. Combination of experiment and theory (Gennaro esposito, Arthur M. Lesk, Henriette Molinari Andrea Motta, Neri Niccolai and Annalisa Pastore). Comparative protein modeling by satisfaction of spatial restraints (Andrej Sali and Tom Blundell). Recurrent Neural Networks for protein distance matrix prediction (Martin Reczko and Henrik Bohr). Growth of domains in distance geometry through protein folding (Henry Bohr, Jin Wang and Peter Wolynes). Predictive power of mean force pair potentials (Manfred J. Sippl and Markus Jaritz). Optimized energy functions for tertiary structure prediction and recognition (Richard A. Goldstein, Zan A. Luthey-Schulten and Peter G. Wolynes). Prediction of 3D structures of globular proteins based on self-consistent molecular field theory (Alexei V. Finkelstein, Rumen A. Dimitrov, Aza Ya, Badretdinov and Boris A. Reva). A potential function that identifies correct protein folds (Gordon M. Crippen and Vladimir N. Maiorov). Genetic algorithm codings used in protein structure prediction by energy minimization (Frank Hermann). Super-secondary structures in proteins (Alexander V. Efimov). Design of model fast-folding proteins (Eugene I. Shakhnovich). Modelling and predicting protein structure using distance geometry (Willian R. taylor and András Aszódi). Modelling secondary structure formation by distance geometry techniques (András Aszódi and Willian R. taylor). A library of signature pentapeptides for the protein data bank (Ikuo Uchiyama, Atsushi Ogiwara, and Minoru Kanehisa). Glycosylation and protein conformation ( Jan E. Hansen, Ole Lund, Khistoffer Rapacki, Henrik Clausen, Erik Mosekilde, Jens O. Nielsen and John-Erik S. Hansen). 1D secondary structure prediction through evolutionary profiles (Burkhard Rost and Chris Sander). Fold-class prediction by neural network (Martin Reczko, Henrik Bohr, Shankar Subramaniam, Sudhakar Pamidighantam and Artemis Hatzigeorgiou). Distance-based approaches to protein structure-function analysis (Michael N. Liebman). Quantification odf secondary structure prediction improvement using distantly related proteins (Jonathan M. Levin, Steffano Pascarella, Patrick Argos and Jean Garnier). Delineating the mainchain topology of four-helix bundle proteins using the genetic algorithm and knowledge based on the amino acid sequence alone ( Patrick Argos and Thomas Dandekar). Correlation between protein secondary structure and the nRNA nucleotide sequence (Soren Brunak, Jacob Engelbrecht and Can Kesmir).
Book Synopsis Soft Computing Applications and Intelligent Systems by : Shahrul Azman Noah
Download or read book Soft Computing Applications and Intelligent Systems written by Shahrul Azman Noah and published by Springer. This book was released on 2013-08-16 with total page 320 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the International Second International Multi-Conference on Artificial Intelligence Technology, M-CAIT 2013, held in Shah Alam, in August 2013. The 25 revised full papers presented were carefully reviewed and selected from 110 submissions. M-CAIT 2013 hosted four special tracks in a single event: Intelligence Computation on Pattern Analysis and Robotics (ICPAIR 2013), Data Mining and Optimization (DMO 2013), Semantic Technology and Information Retrieval (STAIR 2013) and Industrial Computing & Applied Informatics (IComp 2013). The papers address issues of state-of-the-art research, development, implementation and applications within the four focus areas in CAIT: pattern recognition, data mining and optimization, knowledge technology and industrial computing.
Book Synopsis Protein Tertiary Structure Prediction Via Global Optimization of Reduced Model Potential Energy Functions by : Volker Eyrich
Download or read book Protein Tertiary Structure Prediction Via Global Optimization of Reduced Model Potential Energy Functions written by Volker Eyrich and published by . This book was released on 2000 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Particle Swarm Optimization Based Algorithm for Protein Structure Prediction in the 3D HP Model by : Fatima Hassan Kanj
Download or read book Particle Swarm Optimization Based Algorithm for Protein Structure Prediction in the 3D HP Model written by Fatima Hassan Kanj and published by . This book was released on 2008 with total page 106 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author :Bijaya Ketan Panigrahi Publisher :Springer Science & Business Media ISBN 13 :364217390X Total Pages :538 pages Book Rating :4.6/5 (421 download)
Book Synopsis Handbook of Swarm Intelligence by : Bijaya Ketan Panigrahi
Download or read book Handbook of Swarm Intelligence written by Bijaya Ketan Panigrahi and published by Springer Science & Business Media. This book was released on 2011-02-04 with total page 538 pages. Available in PDF, EPUB and Kindle. Book excerpt: From nature, we observe swarming behavior in the form of ant colonies, bird flocking, animal herding, honey bees, swarming of bacteria, and many more. It is only in recent years that researchers have taken notice of such natural swarming systems as culmination of some form of innate collective intelligence, albeit swarm intelligence (SI) - a metaphor that inspires a myriad of computational problem-solving techniques. In computational intelligence, swarm-like algorithms have been successfully applied to solve many real-world problems in engineering and sciences. This handbook volume serves as a useful foundational as well as consolidatory state-of-art collection of articles in the field from various researchers around the globe. It has a rich collection of contributions pertaining to the theoretical and empirical study of single and multi-objective variants of swarm intelligence based algorithms like particle swarm optimization (PSO), ant colony optimization (ACO), bacterial foraging optimization algorithm (BFOA), honey bee social foraging algorithms, and harmony search (HS). With chapters describing various applications of SI techniques in real-world engineering problems, this handbook can be a valuable resource for researchers and practitioners, giving an in-depth flavor of what SI is capable of achieving.
Book Synopsis Applications of Evolutionary Computation by : Paul Kaufmann (Computer scientist)
Download or read book Applications of Evolutionary Computation written by Paul Kaufmann (Computer scientist) and published by . This book was released on 2019 with total page 642 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 22nd International Conference on Applications of Evolutionary Computation, EvoApplications 2019, held in Leipzig, Germany, in April 2019, co-located with the Evo*2019 events EuroGP, EvoCOP and EvoMUSART. The 44 revised full papers presented were carefully reviewed and selected from 66 submissions. They were organized in topical sections named: Engineering and Real World Applications; Games; General; Image and Signal Processing; Life Sciences; Networks and Distributed Systems; Neuroevolution and Data Analytics; Numerical Optimization: Theory, Benchmarks, and Applications; Robotics. --
Author :The Nuclear Magnetic Resonance Society of Japan Publisher :Springer ISBN 13 :9811059667 Total Pages :634 pages Book Rating :4.8/5 (11 download)
Book Synopsis Experimental Approaches of NMR Spectroscopy by : The Nuclear Magnetic Resonance Society of Japan
Download or read book Experimental Approaches of NMR Spectroscopy written by The Nuclear Magnetic Resonance Society of Japan and published by Springer. This book was released on 2017-11-23 with total page 634 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes the advanced developments in methodology and applications of NMR spectroscopy to life science and materials science. Experts who are leaders in the development of new methods and applications of life and material sciences have contributed an exciting range of topics that cover recent advances in structural determination of biological and material molecules, dynamic aspects of biological and material molecules, and development of novel NMR techniques, including resolution and sensitivity enhancement. First, this book particularly emphasizes the experimental details for new researchers to use NMR spectroscopy and pick up the potentials of NMR spectroscopy. Second, the book is designed for those who are involved in either developing the technique or expanding the NMR application fields by applying them to specific samples. Third, the Nuclear Magnetic Resonance Society of Japan has organized this book not only for NMR members of Japan but also for readers worldwide who are interested in using NMR spectroscopy extensively.
Book Synopsis Biomolecular Forms and Functions by : Manju Bansal
Download or read book Biomolecular Forms and Functions written by Manju Bansal and published by World Scientific. This book was released on 2013 with total page 515 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is primarily a compilation of contributed articles representing the impact and application of Ramachandran's work on conformation analysis of biopolymers, as well as recent advances in macromolecular structural biology, involving diverse experimental and computational approaches. This volume is being published to coincide with a conference on "Biomolecular Forms and Functions: A celebration of 50 years of the Ramachandran Map" being held at the Indian Institute of Science, Bangalore, in January 2013.
Book Synopsis Computational Methods for Protein Structure Prediction and Modeling by : Ying Xu
Download or read book Computational Methods for Protein Structure Prediction and Modeling written by Ying Xu and published by Springer. This book was released on 2010-11-29 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Volume One of this two-volume sequence focuses on the basic characterization of known protein structures, and structure prediction from protein sequence information. Eleven chapters survey of the field, covering key topics in modeling, force fields, classification, computational methods, and structure prediction. Each chapter is a self contained review covering definition of the problem and historical perspective; mathematical formulation; computational methods and algorithms; performance results; existing software; strengths, pitfalls, challenges, and future research.
Book Synopsis From Protein Structure to Function with Bioinformatics by : Daniel John Rigden
Download or read book From Protein Structure to Function with Bioinformatics written by Daniel John Rigden and published by Springer Science & Business Media. This book was released on 2008-12-11 with total page 330 pages. Available in PDF, EPUB and Kindle. Book excerpt: Proteins lie at the heart of almost all biological processes and have an incredibly wide range of activities. Central to the function of all proteins is their ability to adopt, stably or sometimes transiently, structures that allow for interaction with other molecules. An understanding of the structure of a protein can therefore lead us to a much improved picture of its molecular function. This realisation has been a prime motivation of recent Structural Genomics projects, involving large-scale experimental determination of protein structures, often those of proteins about which little is known of function. These initiatives have, in turn, stimulated the massive development of novel methods for prediction of protein function from structure. Since model structures may also take advantage of new function prediction algorithms, the first part of the book deals with the various ways in which protein structures may be predicted or inferred, including specific treatment of membrane and intrinsically disordered proteins. A detailed consideration of current structure-based function prediction methodologies forms the second part of this book, which concludes with two chapters, focusing specifically on case studies, designed to illustrate the real-world application of these methods. With bang up-to-date texts from world experts, and abundant links to publicly available resources, this book will be invaluable to anyone who studies proteins and the endlessly fascinating relationship between their structure and function.
Book Synopsis International Conference on Innovative Computing and Communications by : Ashish Khanna
Download or read book International Conference on Innovative Computing and Communications written by Ashish Khanna and published by Springer. This book was released on 2021-09-01 with total page 830 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book includes high-quality research papers presented at the Fourth International Conference on Innovative Computing and Communication (ICICC 2021), which is held at the Shaheed Sukhdev College of Business Studies, University of Delhi, Delhi, India, on February 20–21, 2021. Introducing the innovative works of scientists, professors, research scholars, students and industrial experts in the field of computing and communication, the book promotes the transformation of fundamental research into institutional and industrialized research and the conversion of applied exploration into real-time applications.
