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Dynamical Networks In Physics And Biology
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Book Synopsis Dynamical Networks in Physics and Biology by : D. Beysens
Download or read book Dynamical Networks in Physics and Biology written by D. Beysens and published by Springer Science & Business Media. This book was released on 2013-06-29 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt: The 1997 Les Houches workshop on "Dynamical Network in Physics and Biology" was the third in a series of meetings "At the Frontier between Physics and Biology". Our objective with these workshops is to create a truly interdisciplinary forum for researchers working on outstanding problems in biology, but using different approaches (physical, chemical or biological). Generally speaking, the biologists are trained in the particular and motivated by the specifics, while, in contrast, the physicists deal with generic and "universal" models. All agree about the necessity of developing "robust" models. The specific aim of the workshop was to bridge the gap between physics and biology in the particular field of interconnected dynamical networks. The proper functioning of a living organism of any complexity requires the coordinated activity of a great number of "units". Units, or, in physical terms, degrees of freedom that couple to one another, typically form networks. The physical or biological properties of interconnected networks may drastically differ from those of the individual units: the whole is not simply an assembly of its parts, as can be demonstrated by the following examples. Above a certain (critical) concentration the metallic islands, randomly distributed in an insulating matrix, form an interconnected network. At this point the macroscopic conductivity of the system becomes finite and the amorphous metal is capable of carrying current. The value of the macroscopic conductivity typically is very different from the conductivity of the individual metallic islands.
Book Synopsis Dynamics On and Of Complex Networks by : Niloy Ganguly
Download or read book Dynamics On and Of Complex Networks written by Niloy Ganguly and published by Springer Science & Business Media. This book was released on 2009-04-14 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt: This self-contained book systematically explores the statistical dynamics on and of complex networks having relevance across a large number of scientific disciplines. The theories related to complex networks are increasingly being used by researchers for their usefulness in harnessing the most difficult problems of a particular discipline. The book is a collection of surveys and cutting-edge research contributions exploring the interdisciplinary relationship of dynamics on and of complex networks. Topics covered include complex networks found in nature—genetic pathways, ecological networks, linguistic systems, and social systems—as well as man-made systems such as the World Wide Web and peer-to-peer networks. The contributed chapters in this volume are intended to promote cross-fertilization in several research areas, and will be valuable to newcomers in the field, experienced researchers, practitioners, and graduate students interested in systems exhibiting an underlying complex network structure in disciplines such as computer science, biology, statistical physics, nonlinear dynamics, linguistics, and the social sciences.
Book Synopsis Dynamical Processes on Complex Networks by : Alain Barrat
Download or read book Dynamical Processes on Complex Networks written by Alain Barrat and published by Cambridge University Press. This book was released on 2012-10-11 with total page 361 pages. Available in PDF, EPUB and Kindle. Book excerpt: The availability of large data sets have allowed researchers to uncover complex properties such as large scale fluctuations and heterogeneities in many networks which have lead to the breakdown of standard theoretical frameworks and models. Until recently these systems were considered as haphazard sets of points and connections. Recent advances have generated a vigorous research effort in understanding the effect of complex connectivity patterns on dynamical phenomena. For example, a vast number of everyday systems, from the brain to ecosystems, power grids and the Internet, can be represented as large complex networks. This new and recent account presents a comprehensive explanation of these effects.
Download or read book Adaptive Networks written by Thilo Gross and published by Springer Science & Business Media. This book was released on 2009-08-11 with total page 340 pages. Available in PDF, EPUB and Kindle. Book excerpt: Adding one and one makes two, usually. But sometimes things add up to more than the sum of their parts. This observation, now frequently expressed in the maxim “more is different”, is one of the characteristic features of complex systems and, in particular, complex networks. Along with their ubiquity in real world systems, the ability of networks to exhibit emergent dynamics, once they reach a certain size, has rendered them highly attractive targets for research. The resulting network hype has made the word “network” one of the most in uential buzzwords seen in almost every corner of science, from physics and biology to economy and social sciences. The theme of “more is different” appears in a different way in the present v- ume, from the viewpoint of what we call “adaptive networks.” Adaptive networks uniquely combine dynamics on a network with dynamical adaptive changes of the underlying network topology, and thus they link classes of mechanisms that were previously studied in isolation. Here adding one and one certainly does not make two, but gives rise to a number of new phenomena, including highly robust se- organization of topology and dynamics and other remarkably rich dynamical beh- iors.
Book Synopsis Dynamical Systems on Networks by : Mason Porter
Download or read book Dynamical Systems on Networks written by Mason Porter and published by Springer. This book was released on 2016-03-31 with total page 80 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is a tutorial for the study of dynamical systems on networks. It discusses both methodology and models, including spreading models for social and biological contagions. The authors focus especially on “simple” situations that are analytically tractable, because they are insightful and provide useful springboards for the study of more complicated scenarios. This tutorial, which also includes key pointers to the literature, should be helpful for junior and senior undergraduate students, graduate students, and researchers from mathematics, physics, and engineering who seek to study dynamical systems on networks but who may not have prior experience with graph theory or networks. Mason A. Porter is Professor of Nonlinear and Complex Systems at the Oxford Centre for Industrial and Applied Mathematics, Mathematical Institute, University of Oxford, UK. He is also a member of the CABDyN Complexity Centre and a Tutorial Fellow of Somerville College. James P. Gleeson is Professor of Industrial and Applied Mathematics, and co-Director of MACSI, at the University of Limerick, Ireland.
Book Synopsis Dynamics of Complex Interconnected Systems: Networks and Bioprocesses by : Arne T. Skjeltorp
Download or read book Dynamics of Complex Interconnected Systems: Networks and Bioprocesses written by Arne T. Skjeltorp and published by Springer Science & Business Media. This book was released on 2006-12-22 with total page 222 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book reviews the synergism between various fields of research that are confronted with networks, such as genetic and metabolic networks, social networks, the Internet and ecological systems. In many cases, the interacting networks manifest so-called emergent properties that are not possessed by any of the individual components. Knowledge gained from the study of complex non-biological systems can be applied to the intricate braided relationships that govern cellular functions.
Book Synopsis The Structure and Dynamics of Networks: by : Mark Newman
Download or read book The Structure and Dynamics of Networks: written by Mark Newman and published by Princeton University Press. This book was released on 2006-05-07 with total page 593 pages. Available in PDF, EPUB and Kindle. Book excerpt: From the Internet to networks of friendship, disease transmission, and even terrorism, the concept--and the reality--of networks has come to pervade modern society. But what exactly is a network? What different types of networks are there? Why are they interesting, and what can they tell us? In recent years, scientists from a range of fields--including mathematics, physics, computer science, sociology, and biology--have been pursuing these questions and building a new "science of networks." This book brings together for the first time a set of seminal articles representing research from across these disciplines. It is an ideal sourcebook for the key research in this fast-growing field. The book is organized into four sections, each preceded by an editors' introduction summarizing its contents and general theme. The first section sets the stage by discussing some of the historical antecedents of contemporary research in the area. From there the book moves to the empirical side of the science of networks before turning to the foundational modeling ideas that have been the focus of much subsequent activity. The book closes by taking the reader to the cutting edge of network science--the relationship between network structure and system dynamics. From network robustness to the spread of disease, this section offers a potpourri of topics on this rapidly expanding frontier of the new science.
Book Synopsis Dynamics On and Of Complex Networks, Volume 2 by : Animesh Mukherjee
Download or read book Dynamics On and Of Complex Networks, Volume 2 written by Animesh Mukherjee and published by Springer Science & Business Media. This book was released on 2013-06-04 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: This self-contained book systematically explores the statistical dynamics on and of complex networks with a special focus on time-varying networks. In the constantly changing modern world, there is an urgent need to understand problems related to systems that dynamically evolve in either structure or function, or both. This work is an attempt to address such problems in the framework of complex networks. Dynamics on and of Complex Networks, Volume 2: Applications to Time-Varying Dynamical Systems is a collection of surveys and cutting-edge research contributions exploring key issues, challenges, and characteristics of dynamical networks that emerge in various complex systems. Toward this goal, the work is thematically organized into three main sections with the primary thrust on time-varying networks: Part I studies social dynamics; Part II focuses on community identification; and Part III illustrates diffusion processes. The contributed chapters in this volume are intended to promote cross-fertilization in several research areas and will be valuable to newcomers in the field, experienced researchers, practitioners, and graduate students interested in pursuing research in dynamical networks with applications to computer science, statistical physics, nonlinear dynamics, linguistics, and the social sciences. This volume follows Dynamics On and Of Complex Networks: Applications to Biology, Computer Science, and the Social Sciences (2009), ISBN 978-0-8176-4750-6.
Book Synopsis Handbook of Graphs and Networks by : Stefan Bornholdt
Download or read book Handbook of Graphs and Networks written by Stefan Bornholdt and published by Wiley-VCH. This book was released on 2003-02-03 with total page 417 pages. Available in PDF, EPUB and Kindle. Book excerpt: Complex interacting networks are observed in systems from such diverse areas as physics, biology, economics, ecology, and computer science. For example, economic or social interactions often organize themselves in complex network structures. Similar phenomena are observed in traffic flow and in communication networks as the internet. In current problems of the Biosciences, prominent examples are protein networks in the living cell, as well as molecular networks in the genome. On larger scales one finds networks of cells as in neural networks, up to the scale of organisms in ecological food webs. This book defines the field of complex interacting networks in its infancy and presents the dynamics of networks and their structure as a key concept across disciplines. The contributions present common underlying principles of network dynamics and their theoretical description and are of interest to specialists as well as to the non-specialized reader looking for an introduction to this new exciting field. Theoretical concepts include modeling networks as dynamical systems with numerical methods and new graph theoretical methods, but also focus on networks that change their topology as in morphogenesis and self-organization. The authors offer concepts to model network structures and dynamics, focussing on approaches applicable across disciplines.
Book Synopsis Handbook of Graphs and Networks by : Stefan Bornholdt
Download or read book Handbook of Graphs and Networks written by Stefan Bornholdt and published by John Wiley & Sons. This book was released on 2006-03-06 with total page 417 pages. Available in PDF, EPUB and Kindle. Book excerpt: Complex interacting networks are observed in systems from such diverse areas as physics, biology, economics, ecology, and computer science. For example, economic or social interactions often organize themselves in complex network structures. Similar phenomena are observed in traffic flow and in communication networks as the internet. In current problems of the Biosciences, prominent examples are protein networks in the living cell, as well as molecular networks in the genome. On larger scales one finds networks of cells as in neural networks, up to the scale of organisms in ecological food webs. This book defines the field of complex interacting networks in its infancy and presents the dynamics of networks and their structure as a key concept across disciplines. The contributions present common underlying principles of network dynamics and their theoretical description and are of interest to specialists as well as to the non-specialized reader looking for an introduction to this new exciting field. Theoretical concepts include modeling networks as dynamical systems with numerical methods and new graph theoretical methods, but also focus on networks that change their topology as in morphogenesis and self-organization. The authors offer concepts to model network structures and dynamics, focussing on approaches applicable across disciplines.
Book Synopsis Theoretical Physics for Biological Systems by : Paola Lecca
Download or read book Theoretical Physics for Biological Systems written by Paola Lecca and published by CRC Press. This book was released on 2019-01-30 with total page 106 pages. Available in PDF, EPUB and Kindle. Book excerpt: Quantum physics provides the concepts and their mathematical formalization that lend themselves to describe important properties of biological networks topology, such as vulnerability to external stress and their dynamic response to changing physiological conditions. A theory of networks enhanced with mathematical concepts and tools of quantum physics opens a new area of biological physics, the one of systems biological physics.
Book Synopsis Polymer and Cell Dynamics by : Wolfgang Alt
Download or read book Polymer and Cell Dynamics written by Wolfgang Alt and published by Birkhäuser. This book was released on 2012-12-06 with total page 308 pages. Available in PDF, EPUB and Kindle. Book excerpt: Polymer and cell dynamics play an important role in processes like tumor growth, metastasis, embryogenesis, immune reactions and regeneration. Based on an international workshop on numerical simulations of polymer and cell dynamics in Bad Honnef (Germany) in 2000, this volume provides an overview of the relevant mathematical and numerical methods, their applications and limits. Polymer and Cell Dynamics will be of interest to scientists and advanced undergraduates.
Book Synopsis Biological Physics of the Developing Embryo by : Gabor Forgacs
Download or read book Biological Physics of the Developing Embryo written by Gabor Forgacs and published by Cambridge University Press. This book was released on 2005-11-24 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: During development cells and tissues undergo changes in pattern and form that employ a wider range of physical mechanisms than at any other time in an organism's life. This book shows how physics can be used to analyze these biological phenomena. Written to be accessible to both biologists and physicists, major stages and components of the biological development process are introduced and then analyzed from the viewpoint of physics. The presentation of physical models requires no mathematics beyond basic calculus. Physical concepts introduced include diffusion, viscosity and elasticity, adhesion, dynamical systems, electrical potential, percolation, fractals, reaction-diffusion systems, and cellular automata. With full-color figures throughout, this comprehensive textbook teaches biophysics by application to developmental biology and is suitable for graduate and upper-undergraduate courses in physics and biology.
Book Synopsis Networks: From Biology to Theory by : Jianfeng Feng
Download or read book Networks: From Biology to Theory written by Jianfeng Feng and published by Springer Science & Business Media. This book was released on 2007-09-04 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent decades have witnessed the thriving development of new mathematical, computational and theoretical approaches, such as bioinformatics and neuroinformatics, to tackle fundamental issues in biology. These approaches focus no longer on individual units, such as nerve cells or genes, but rather on dynamic patterns of interactions between them. This volume explores the concept in full, featuring contributions from a global group of contributors, many of whom are pre-eminent in their field.
Book Synopsis Systems Biology: Simulation of Dynamic Network States by : Bernhard Ø. Palsson
Download or read book Systems Biology: Simulation of Dynamic Network States written by Bernhard Ø. Palsson and published by Cambridge University Press. This book was released on 2011-05-26 with total page 333 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biophysical models have been used in biology for decades, but they have been limited in scope and size. In this book, Bernhard Ø. Palsson shows how network reconstructions that are based on genomic and bibliomic data, and take the form of established stoichiometric matrices, can be converted into dynamic models using metabolomic and fluxomic data. The Mass Action Stoichiometric Simulation (MASS) procedure can be used for any cellular process for which data is available and allows a scalable step-by-step approach to the practical construction of network models. Specifically, it can treat integrated processes that need explicit accounting of small molecules and protein, which allows simulation at the molecular level. The material has been class-tested by the author at both the undergraduate and graduate level. All computations in the text are available online in MATLAB® and Mathematica® workbooks, allowing hands-on practice with the material.
Book Synopsis Systems Biology: Simulation of Dynamic Network States by : Bernhard Ø. Palsson
Download or read book Systems Biology: Simulation of Dynamic Network States written by Bernhard Ø. Palsson and published by Cambridge University Press. This book was released on 2011-05-26 with total page 332 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biophysical models have been used in biology for decades, but they have been limited in scope and size. In this book, Bernhard Ø. Palsson shows how network reconstructions that are based on genomic and bibliomic data, and take the form of established stoichiometric matrices, can be converted into dynamic models using metabolomic and fluxomic data. The Mass Action Stoichiometric Simulation (MASS) procedure can be used for any cellular process for which data is available and allows a scalable step-by-step approach to the practical construction of network models. Specifically, it can treat integrated processes that need explicit accounting of small molecules and protein, which allows simulation at the molecular level. The material has been class-tested by the author at both the undergraduate and graduate level. All computations in the text are available online in MATLAB and MATHEMATICA® workbooks, allowing hands-on practice with the material.
Download or read book Mechanobiology written by J. F. Stoltz and published by IOS Press. This book was released on 2000 with total page 202 pages. Available in PDF, EPUB and Kindle. Book excerpt: Until the '90s, research in biomechanics and biorheology mainly focused on tissues and cell priorities, so as to identify the bioclinical problems linked to the rheology properties of cells and tissues or to develop substitutes. Advances in molecular biology and new knowledge in cellular biology over the last ten years have given access to a more physiological approach to the effects of stress on cells and tissues.
