Systems Biology Simulation Of Dynamic Network States

Download Systems Biology Simulation Of Dynamic Network States full books in PDF, epub, and Kindle. Read online Systems Biology Simulation Of Dynamic Network States ebook anywhere anytime directly on your device. Fast Download speed and no annoying ads. We cannot guarantee that every ebooks is available!

Systems Biology: Simulation of Dynamic Network States

Author : Bernhard Ø. Palsson
Publisher : Cambridge University Press
ISBN 13 : 1139495429
Total Pages : 333 pages
Book Rating : 4.1/5 (394 download)

DOWNLOAD NOW!

Book Synopsis Systems Biology: Simulation of Dynamic Network States by : Bernhard Ø. Palsson

Download or read book Systems Biology: Simulation of Dynamic Network States written by Bernhard Ø. Palsson and published by Cambridge University Press. This book was released on 2011-05-26 with total page 333 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biophysical models have been used in biology for decades, but they have been limited in scope and size. In this book, Bernhard Ø. Palsson shows how network reconstructions that are based on genomic and bibliomic data, and take the form of established stoichiometric matrices, can be converted into dynamic models using metabolomic and fluxomic data. The Mass Action Stoichiometric Simulation (MASS) procedure can be used for any cellular process for which data is available and allows a scalable step-by-step approach to the practical construction of network models. Specifically, it can treat integrated processes that need explicit accounting of small molecules and protein, which allows simulation at the molecular level. The material has been class-tested by the author at both the undergraduate and graduate level. All computations in the text are available online in MATLAB® and Mathematica® workbooks, allowing hands-on practice with the material.

Systems Biology

Author : Bernhard Palsson
Publisher :
ISBN 13 : 9781139128070
Total Pages : 332 pages
Book Rating : 4.1/5 (28 download)

DOWNLOAD NOW!

Book Synopsis Systems Biology by : Bernhard Palsson

Download or read book Systems Biology written by Bernhard Palsson and published by . This book was released on 2011 with total page 332 pages. Available in PDF, EPUB and Kindle. Book excerpt: Master the process of building MASS models with real examples and hands-on practice.

Systems Biology

Author : Bernhard Ø. Palsson
Publisher : Cambridge University Press
ISBN 13 : 1139448943
Total Pages : 287 pages
Book Rating : 4.1/5 (394 download)

DOWNLOAD NOW!

Book Synopsis Systems Biology by : Bernhard Ø. Palsson

Download or read book Systems Biology written by Bernhard Ø. Palsson and published by Cambridge University Press. This book was released on 2006-01-16 with total page 287 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genome sequences are now available that enable us to determine the biological components that make up a cell or an organism. The discipline of systems biology examines how these components interact and form networks, and how the networks generate whole cell functions corresponding to observable phenotypes. This textbook, devoted to systems biology, describes how to model networks, how to determine their properties, and how to relate these to phenotypic functions. The prerequisites are some knowledge of linear algebra and biochemistry. Though the links between the mathematical ideas and biological processes are made clear, the book reflects the irreversible trend of increasing mathematical content in biology education. Therefore to assist both teacher and student, in an associated website Palsson provides problem sets, projects and Powerpoint slides, and keeps the presentation in the book concrete with illustrative material and experimental results.

Systems Biology

Author : Marvin Cassman
Publisher : Springer Science & Business Media
ISBN 13 : 1402054688
Total Pages : 273 pages
Book Rating : 4.4/5 (2 download)

DOWNLOAD NOW!

Book Synopsis Systems Biology by : Marvin Cassman

Download or read book Systems Biology written by Marvin Cassman and published by Springer Science & Business Media. This book was released on 2007-05-16 with total page 273 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book explores Systems Biology as the understanding of biological network behaviors, and in particular their dynamic aspects, which requires the utilization of mathematical modeling tightly linked to experiment. A variety of approaches are discussed here: the identification and validation of networks, the creation of appropriate datasets, the development of tools for data acquisition and software development, and the use of modeling and simulation software in close concert with experiment.

Systems Biology

Author : Bernhard Palsson
Publisher : Cambridge University Press
ISBN 13 : 1107038855
Total Pages : 551 pages
Book Rating : 4.1/5 (7 download)

DOWNLOAD NOW!

Book Synopsis Systems Biology by : Bernhard Palsson

Download or read book Systems Biology written by Bernhard Palsson and published by Cambridge University Press. This book was released on 2015-01-26 with total page 551 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first comprehensive single-authored textbook on genome-scale models and the bottom-up approach to systems biology.

Systems Biology

Author : Bernhard Ø. Palsson
Publisher : Cambridge University Press
ISBN 13 : 1316239942
Total Pages : 551 pages
Book Rating : 4.3/5 (162 download)

DOWNLOAD NOW!

Book Synopsis Systems Biology by : Bernhard Ø. Palsson

Download or read book Systems Biology written by Bernhard Ø. Palsson and published by Cambridge University Press. This book was released on 2015-01-26 with total page 551 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent technological advances have enabled comprehensive determination of the molecular composition of living cells. The chemical interactions between many of these molecules are known, giving rise to genome-scale reconstructed biochemical reaction networks underlying cellular functions. Mathematical descriptions of the totality of these chemical interactions lead to genome-scale models that allow the computation of physiological functions. Reflecting these recent developments, this textbook explains how such quantitative and computable genotype-phenotype relationships are built using a genome-wide basis of information about the gene portfolio of a target organism. It describes how biological knowledge is assembled to reconstruct biochemical reaction networks, the formulation of computational models of biological functions, and how these models can be used to address key biological questions and enable predictive biology. Developed through extensive classroom use, the book is designed to provide students with a solid conceptual framework and an invaluable set of modeling tools and computational approaches.

Systems Biology

Author : Mariano Bizzarri
Publisher : Springer Nature
ISBN 13 : 1071635778
Total Pages : 261 pages
Book Rating : 4.0/5 (716 download)

DOWNLOAD NOW!

Book Synopsis Systems Biology by : Mariano Bizzarri

Download or read book Systems Biology written by Mariano Bizzarri and published by Springer Nature. This book was released on 2024-01-08 with total page 261 pages. Available in PDF, EPUB and Kindle. Book excerpt: This second edition volume expands on the previous edition with discussions of the latest advancements and methods used by scientists to study systems biology. The chapters in this book are organized into four parts. Part One looks at models in systems biology and parameters identification such as short peptide analysis, metastasis models, and metabolomics. Part Two covers computational methods in the study of organisms, and cancer non-linear dynamics. Part Three discusses critical transition states across Waddington’s like landscapes such as understanding cell differentiation through single-cell approaches and modeling mammary organogenesis from biological first principles. Part Four talks about specific fields of investigation including inborn errors of metabolism, system biology approach in epithelial-mesenchymal transition, and an approach to understanding how COVID-19 spreads in the population. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and comprehensive, Systems Biology, Second Edition is a valuable tool for any researcher looking to learn more about this important and developing field.

Computational Systems Biology in Medicine and Biotechnology

Author : Sonia Cortassa
Publisher : Springer Nature
ISBN 13 : 1071618318
Total Pages : 494 pages
Book Rating : 4.0/5 (716 download)

DOWNLOAD NOW!

Book Synopsis Computational Systems Biology in Medicine and Biotechnology by : Sonia Cortassa

Download or read book Computational Systems Biology in Medicine and Biotechnology written by Sonia Cortassa and published by Springer Nature. This book was released on 2022-05-23 with total page 494 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume addresses the latest state-of-the-art systems biology-oriented approaches that--driven by big data and bioinformatics--are utilized by Computational Systems Biology, an interdisciplinary field that bridges experimental tools with computational tools to tackle complex questions at the frontiers of knowledge in medicine and biotechnology. The chapters in this book are organized into six parts: systems biology of the genome, epigenome, and redox proteome; metabolic networks; aging and longevity; systems biology of diseases; spatiotemporal patterns of rhythms, morphogenesis, and complex dynamics; and genome scale metabolic modeling in biotechnology. In every chapter, readers will find varied methodological approaches applied at different levels, from molecular, cellular, organ to organisms, genome to phenome, and health and disease. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics; criteria utilized for applying specific methodologies; lists of the necessary materials, reagents, software, databases, algorithms, mathematical models, and dedicated analytical procedures; step-by-step, readily reproducible laboratory, bioinformatics, and computational protocols all delivered in didactic and clear style and abundantly illustrated with express case studies and tutorials; and tips on troubleshooting and advice for achieving reproducibility while avoiding mistakes and misinterpretations. The overarching goal driving this volume is to excite the expert and stimulate the newcomer to the field of Computational Systems Biology. Cutting-edge and authoritative, Computational Systems Biology in Medicine and Biotechnology: Methods and Protocols is a valuable resource for pre- and post-graduate students in medicine and biotechnology, and in diverse areas ranging from microbiology to cellular and organismal biology, as well as computational and experimental biologists, and researchers interested in utilizing comprehensive systems biology oriented methods.

Computational Systems Biology

Author : Reinhard Laubenbacher
Publisher : Elsevier Inc. Chapters
ISBN 13 : 0128070129
Total Pages : 548 pages
Book Rating : 4.1/5 (28 download)

DOWNLOAD NOW!

Book Synopsis Computational Systems Biology by : Reinhard Laubenbacher

Download or read book Computational Systems Biology written by Reinhard Laubenbacher and published by Elsevier Inc. Chapters. This book was released on 2013-11-26 with total page 548 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematical and statistical network modeling is an important step toward uncovering the organizational principles and dynamic behavior of biological networks. This chapter focuses on methods to construct discrete dynamic models of gene regulatory networks from experimental data sets, also sometimes referred to as top-down modeling or reverse engineering. Time-discrete dynamical systems models have long been used in biology, particularly in population dynamics. The models mainly focused on here are also assumed to have a finite set of possible states for each variable. That is, the modeling framework discussed in this chapter is that of time-discrete dynamical systems over a finite state set.

Bond Graphs for Modelling, Control and Fault Diagnosis of Engineering Systems

Author : Wolfgang Borutzky
Publisher : Springer
ISBN 13 : 3319474340
Total Pages : 679 pages
Book Rating : 4.3/5 (194 download)

DOWNLOAD NOW!

Book Synopsis Bond Graphs for Modelling, Control and Fault Diagnosis of Engineering Systems by : Wolfgang Borutzky

Download or read book Bond Graphs for Modelling, Control and Fault Diagnosis of Engineering Systems written by Wolfgang Borutzky and published by Springer. This book was released on 2016-12-31 with total page 679 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents theory and latest application work in Bond Graph methodology with a focus on: • Hybrid dynamical system models, • Model-based fault diagnosis, model-based fault tolerant control, fault prognosis • and also addresses • Open thermodynamic systems with compressible fluid flow, • Distributed parameter models of mechanical subsystems. In addition, the book covers various applications of current interest ranging from motorised wheelchairs, in-vivo surgery robots, walking machines to wind-turbines.The up-to-date presentation has been made possible by experts who are active members of the worldwide bond graph modelling community. This book is the completely revised 2nd edition of the 2011 Springer compilation text titled Bond Graph Modelling of Engineering Systems – Theory, Applications and Software Support. It extends the presentation of theory and applications of graph methodology by new developments and latest research results. Like the first edition, this book addresses readers in academia as well as practitioners in industry and invites experts in related fields to consider the potential and the state-of-the-art of bond graph modelling.

Contextualizing Systems Biology

Author : Martin Döring
Publisher : Springer
ISBN 13 : 3319171062
Total Pages : 316 pages
Book Rating : 4.3/5 (191 download)

DOWNLOAD NOW!

Book Synopsis Contextualizing Systems Biology by : Martin Döring

Download or read book Contextualizing Systems Biology written by Martin Döring and published by Springer. This book was released on 2015-12-18 with total page 316 pages. Available in PDF, EPUB and Kindle. Book excerpt: This collective monograph aims at contributing to an improved understanding of the epistemic presumptions, sociocultural implications and historically backgrounds of the newly emerging and currently expanding approach of systems biology. In doing so, it offers empirically grounded, valuable and reflexive information about a paradigmatic shift in the biosciences for a wide range of scientists working in the interdisciplinary areas of systems biology, synthetic biology, molecular biology, biology, the philosophy of science, the sociology of science and scientific knowledge, science and technology studies, technology assessment and the like. The authors of this monograph share the theoretical methodological premise that science is a culturally and socially embedded practice which characterizes our culture as a scientific one and at the same time draws its innovative potential from its socio-cultural context. This dialectic relationship lies at the heart of the current development of systems biology which is conceived as a so-called successor of ‘-omics’ research and triggered by high-throughput information technologies. At the same time a need for a holistic conceptualization of complex biological processes emerges. The title Contextualizing Systems Biology suggests that this book analyzes the development and advent of systems biology from different theoretical and methodological perspectives. We investigate a variety of contexts ranging from the analysis of cognitive contexts (such as basic theoretical concepts) to regulative contexts (policies) to the concrete application of a systems biology in the socio-scientific context of a European research project. In empirically analyzing these different and interrelated layers and dimensions of systems biology, the scope of the book goes beyond present attempts to investigate the advent of new approaches in the biological sciences as it frames and assesses systems biology from an interdisciplinary and integrated perspective.

Networks in Systems Biology

Author : Fabricio Alves Barbosa da Silva
Publisher : Springer Nature
ISBN 13 : 3030518620
Total Pages : 381 pages
Book Rating : 4.0/5 (35 download)

DOWNLOAD NOW!

Book Synopsis Networks in Systems Biology by : Fabricio Alves Barbosa da Silva

Download or read book Networks in Systems Biology written by Fabricio Alves Barbosa da Silva and published by Springer Nature. This book was released on 2020-10-03 with total page 381 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents a range of current research topics in biological network modeling, as well as its application in studies on human hosts, pathogens, and diseases. Systems biology is a rapidly expanding field that involves the study of biological systems through the mathematical modeling and analysis of large volumes of biological data. Gathering contributions from renowned experts in the field, some of the topics discussed in depth here include networks in systems biology, the computational modeling of multidrug-resistant bacteria, and systems biology of cancer. Given its scope, the book is intended for researchers, advanced students, and practitioners of systems biology. The chapters are research-oriented, and present some of the latest findings on their respective topics.

Simulation Algorithms for Computational Systems Biology

Author : Luca Marchetti
Publisher : Springer
ISBN 13 : 3319631136
Total Pages : 238 pages
Book Rating : 4.3/5 (196 download)

DOWNLOAD NOW!

Book Synopsis Simulation Algorithms for Computational Systems Biology by : Luca Marchetti

Download or read book Simulation Algorithms for Computational Systems Biology written by Luca Marchetti and published by Springer. This book was released on 2017-09-27 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book explains the state-of-the-art algorithms used to simulate biological dynamics. Each technique is theoretically introduced and applied to a set of modeling cases. Starting from basic simulation algorithms, the book also introduces more advanced techniques that support delays, diffusion in space, or that are based on hybrid simulation strategies. This is a valuable self-contained resource for graduate students and practitioners in computer science, biology and bioinformatics. An appendix covers the mathematical background, and the authors include further reading sections in each chapter.

Collective Behavior In Systems Biology

Author : Assaf Steinschneider
Publisher : Academic Press
ISBN 13 : 0128173378
Total Pages : 260 pages
Book Rating : 4.1/5 (281 download)

DOWNLOAD NOW!

Book Synopsis Collective Behavior In Systems Biology by : Assaf Steinschneider

Download or read book Collective Behavior In Systems Biology written by Assaf Steinschneider and published by Academic Press. This book was released on 2019-09-04 with total page 260 pages. Available in PDF, EPUB and Kindle. Book excerpt: Collective Behavior In Systems Biology: A Primer on Modeling Infrastructure offers a survey of established and emerging methods for quantifying process behavior in cellular systems. It introduces and applies mathematics and related abstract methods to processes in biological systems - why they are used, how they work, and what they mean. Emphasizing differential equations in an interdisciplinary approach, this book discusses infrastructure for kinetic modeling, technological system and control theories, optimization, and process behavior in cellular networks. The knowledge that the reader gains will be valuable for entering and keeping up with a rapidly developing discipline. Introduces basics of mathematical and abstract methods for understanding, predicting, and modifying collective behavior in cellular systems Targets biomedical professionals as well as computational specialists who are willing to take advantage of novel high-throughput data acquisition technologies

Systems Biology

Author : Marvin Cassman
Publisher : Springer
ISBN 13 : 9789048111213
Total Pages : 262 pages
Book Rating : 4.1/5 (112 download)

DOWNLOAD NOW!

Book Synopsis Systems Biology by : Marvin Cassman

Download or read book Systems Biology written by Marvin Cassman and published by Springer. This book was released on 2009-09-03 with total page 262 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book explores Systems Biology as the understanding of biological network behaviors, and in particular their dynamic aspects, which requires the utilization of mathematical modeling tightly linked to experiment. A variety of approaches are discussed here: the identification and validation of networks, the creation of appropriate datasets, the development of tools for data acquisition and software development, and the use of modeling and simulation software in close concert with experiment.

An Introduction to Computational Systems Biology

Author : Karthik Raman
Publisher : CRC Press
ISBN 13 : 0429944527
Total Pages : 359 pages
Book Rating : 4.4/5 (299 download)

DOWNLOAD NOW!

Book Synopsis An Introduction to Computational Systems Biology by : Karthik Raman

Download or read book An Introduction to Computational Systems Biology written by Karthik Raman and published by CRC Press. This book was released on 2021-05-30 with total page 359 pages. Available in PDF, EPUB and Kindle. Book excerpt: Emphasises a hands-on approach to modelling Strong emphasis on coding and software tools for systems biology Covers the entire spectrum of modelling, from static networks, to dynamic models Thoughtful exercises to test and enable student understanding of concepts Current chapters on exciting new developments like whole-cell modelling and community modelling

The Physics of Living Processes

Author : Thomas Andrew Waigh
Publisher : John Wiley & Sons
ISBN 13 : 1118449940
Total Pages : 617 pages
Book Rating : 4.1/5 (184 download)

DOWNLOAD NOW!

Book Synopsis The Physics of Living Processes by : Thomas Andrew Waigh

Download or read book The Physics of Living Processes written by Thomas Andrew Waigh and published by John Wiley & Sons. This book was released on 2014-10-20 with total page 617 pages. Available in PDF, EPUB and Kindle. Book excerpt: This full-colour undergraduate textbook, based on a two semester course, presents the fundamentals of biological physics, introducing essential modern topics that include cells, polymers, polyelectrolytes, membranes, liquid crystals, phase transitions, self-assembly, photonics, fluid mechanics, motility, chemical kinetics, enzyme kinetics, systems biology, nerves, physiology, the senses, and the brain. The comprehensive coverage, featuring in-depth explanations of recent rapid developments, demonstrates this to be one of the most diverse of modern scientific disciplines. The Physics of Living Processes: A Mesoscopic Approach is comprised of five principal sections: • Building Blocks • Soft Condensed Matter Techniques in Biology • Experimental Techniques • Systems Biology • Spikes, Brains and the Senses The unique focus is predominantly on the mesoscale — structures on length scales between those of atoms and the macroscopic behaviour of whole organisms. The connections between molecules and their emergent biological phenomena provide a novel integrated perspective on biological physics, making this an important text across a variety of scientific disciplines including biophysics, physics, physical chemistry, chemical engineering and bioengineering. An extensive set of worked tutorial questions are included, which will equip the reader with a range of new physical tools to approach problems in the life sciences from medicine, pharmaceutical science and agriculture.