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Biological Computation
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Book Synopsis Biological Computation by : Ehud Lamm
Download or read book Biological Computation written by Ehud Lamm and published by CRC Press. This book was released on 2011-05-25 with total page 332 pages. Available in PDF, EPUB and Kindle. Book excerpt: The area of biologically inspired computing, or biological computation, involves the development of new, biologically based techniques for solving difficult computational problems. A unified overview of computer science ideas inspired by biology, Biological Computation presents the most fundamental and significant concepts in this area. In the book
Book Synopsis Biological Computation by : Ehud Lamm
Download or read book Biological Computation written by Ehud Lamm and published by CRC Press. This book was released on 2011-05-25 with total page 346 pages. Available in PDF, EPUB and Kindle. Book excerpt: The area of biologically inspired computing, or biological computation, involves the development of new, biologically based techniques for solving difficult computational problems. A unified overview of computer science ideas inspired by biology, Biological Computation presents the most fundamental and significant concepts in this area. In the book, students discover that bacteria communicate, that DNA can be used for performing computations, how evolution solves optimization problems, that the way ants organize their nests can be applied to solve clustering problems, and what the human immune system can teach us about protecting computer networks. The authors discuss more biological examples such as these, along with the computational techniques developed from these scenarios. The text focuses on cellular automata, evolutionary computation, neural networks, and molecular computation. Each chapter explores the biological background, describes the computational techniques, gives examples of applications, discusses possible variants of the techniques, and includes exercises and solutions. The authors use the examples and exercises to illustrate key ideas and techniques. Clearly conveying the essence of the major computational approaches in the field, this book brings students to the point where they can either produce a working implementation of the techniques or effectively use one of the many available implementations. Moreover, the techniques discussed reflect fundamental principles that can be applied beyond bio-inspired computing. Supplementary material is available on Dr. Unger's website.
Book Synopsis Quantifying Life by : Dmitry A. Kondrashov
Download or read book Quantifying Life written by Dmitry A. Kondrashov and published by University of Chicago Press. This book was released on 2016-08-04 with total page 434 pages. Available in PDF, EPUB and Kindle. Book excerpt: Since the time of Isaac Newton, physicists have used mathematics to describe the behavior of matter of all sizes, from subatomic particles to galaxies. In the past three decades, as advances in molecular biology have produced an avalanche of data, computational and mathematical techniques have also become necessary tools in the arsenal of biologists. But while quantitative approaches are now providing fundamental insights into biological systems, the college curriculum for biologists has not caught up, and most biology majors are never exposed to the computational and probabilistic mathematical approaches that dominate in biological research. With Quantifying Life, Dmitry A. Kondrashov offers an accessible introduction to the breadth of mathematical modeling used in biology today. Assuming only a foundation in high school mathematics, Quantifying Life takes an innovative computational approach to developing mathematical skills and intuition. Through lessons illustrated with copious examples, mathematical and programming exercises, literature discussion questions, and computational projects of various degrees of difficulty, students build and analyze models based on current research papers and learn to implement them in the R programming language. This interplay of mathematical ideas, systematically developed programming skills, and a broad selection of biological research topics makes Quantifying Life an invaluable guide for seasoned life scientists and the next generation of biologists alike.
Book Synopsis A Primer for Computational Biology by : Shawn T. O'Neil
Download or read book A Primer for Computational Biology written by Shawn T. O'Neil and published by . This book was released on 2017-12-21 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: A Primer for Computational Biology aims to provide life scientists and students the skills necessary for research in a data-rich world. The text covers accessing and using remote servers via the command-line, writing programs and pipelines for data analysis, and provides useful vocabulary for interdisciplinary work. The book is broken into three parts: Introduction to Unix/Linux: The command-line is the "natural environment" of scientific computing, and this part covers a wide range of topics, including logging in, working with files and directories, installing programs and writing scripts, and the powerful "pipe" operator for file and data manipulation. Programming in Python: Python is both a premier language for learning and a common choice in scientific software development. This part covers the basic concepts in programming (data types, if-statements and loops, functions) via examples of DNA-sequence analysis. This part also covers more complex subjects in software development such as objects and classes, modules, and APIs. Programming in R: The R language specializes in statistical data analysis, and is also quite useful for visualizing large datasets. This third part covers the basics of R as a programming language (data types, if-statements, functions, loops and when to use them) as well as techniques for large-scale, multi-test analyses. Other topics include S3 classes and data visualization with ggplot2.
Book Synopsis Encyclopedia of Bioinformatics and Computational Biology by :
Download or read book Encyclopedia of Bioinformatics and Computational Biology written by and published by Elsevier. This book was released on 2018-08-21 with total page 3421 pages. Available in PDF, EPUB and Kindle. Book excerpt: Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics, Three Volume Set combines elements of computer science, information technology, mathematics, statistics and biotechnology, providing the methodology and in silico solutions to mine biological data and processes. The book covers Theory, Topics and Applications, with a special focus on Integrative –omics and Systems Biology. The theoretical, methodological underpinnings of BCB, including phylogeny are covered, as are more current areas of focus, such as translational bioinformatics, cheminformatics, and environmental informatics. Finally, Applications provide guidance for commonly asked questions. This major reference work spans basic and cutting-edge methodologies authored by leaders in the field, providing an invaluable resource for students, scientists, professionals in research institutes, and a broad swath of researchers in biotechnology and the biomedical and pharmaceutical industries. Brings together information from computer science, information technology, mathematics, statistics and biotechnology Written and reviewed by leading experts in the field, providing a unique and authoritative resource Focuses on the main theoretical and methodological concepts before expanding on specific topics and applications Includes interactive images, multimedia tools and crosslinking to further resources and databases
Book Synopsis Biology and Computation by : H. Gutfreund
Download or read book Biology and Computation written by H. Gutfreund and published by World Scientific. This book was released on 1994 with total page 880 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a comprehensive review of the works in the rapidly evolving field of neural networks and brain studies. Its purpose is two-fold: to help physicists entering this field to get a broader view of the context of the domain, and to help scientists of other disciplines to reach a better understanding of the physicists' contributions within a context of perspectives they can relate to.Included in the volume are 68 carefully selected, high quality reprints to provide the volume with both breadth and depth. It is organized into 5 sections and 22 chapters, both the sections and chapters being preceded by introductory comments by the editors.
Book Synopsis Bio-Inspired Computation in Telecommunications by : Xin-She Yang
Download or read book Bio-Inspired Computation in Telecommunications written by Xin-She Yang and published by Morgan Kaufmann. This book was released on 2015-02-11 with total page 348 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bio-inspired computation, especially those based on swarm intelligence, has become increasingly popular in the last decade. Bio-Inspired Computation in Telecommunications reviews the latest developments in bio-inspired computation from both theory and application as they relate to telecommunications and image processing, providing a complete resource that analyzes and discusses the latest and future trends in research directions. Written by recognized experts, this is a must-have guide for researchers, telecommunication engineers, computer scientists and PhD students.
Book Synopsis An Introduction to Systems Biology by : Uri Alon
Download or read book An Introduction to Systems Biology written by Uri Alon and published by CRC Press. This book was released on 2006-07-07 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: Thorough and accessible, this book presents the design principles of biological systems, and highlights the recurring circuit elements that make up biological networks. It provides a simple mathematical framework which can be used to understand and even design biological circuits. The textavoids specialist terms, focusing instead on several well-studied biological systems that concisely demonstrate key principles. An Introduction to Systems Biology: Design Principles of Biological Circuits builds a solid foundation for the intuitive understanding of general principles. It encourages the reader to ask why a system is designed in a particular way and then proceeds to answer with simplified models.
Book Synopsis Complex Fluids in Biological Systems by : Saverio E. Spagnolie
Download or read book Complex Fluids in Biological Systems written by Saverio E. Spagnolie and published by Springer. This book was released on 2014-11-27 with total page 440 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book serves as an introduction to the continuum mechanics and mathematical modeling of complex fluids in living systems. The form and function of living systems are intimately tied to the nature of surrounding fluid environments, which commonly exhibit nonlinear and history dependent responses to forces and displacements. With ever-increasing capabilities in the visualization and manipulation of biological systems, research on the fundamental phenomena, models, measurements, and analysis of complex fluids has taken a number of exciting directions. In this book, many of the world’s foremost experts explore key topics such as: Macro- and micro-rheological techniques for measuring the material properties of complex biofluids and the subtleties of data interpretation Experimental observations and rheology of complex biological materials, including mucus, cell membranes, the cytoskeleton, and blood The motility of microorganisms in complex fluids and the dynamics of active suspensions Challenges and solutions in the numerical simulation of biologically relevant complex fluid flows This volume will be accessible to advanced undergraduate and beginning graduate students in engineering, mathematics, biology, and the physical sciences, but will appeal to anyone interested in the intricate and beautiful nature of complex fluids in the context of living systems.
Book Synopsis Biological Modeling and Simulation by : Russell Schwartz
Download or read book Biological Modeling and Simulation written by Russell Schwartz and published by MIT Press. This book was released on 2008-07-25 with total page 403 pages. Available in PDF, EPUB and Kindle. Book excerpt: A practice-oriented survey of techniques for computational modeling and simulation suitable for a broad range of biological problems. There are many excellent computational biology resources now available for learning about methods that have been developed to address specific biological systems, but comparatively little attention has been paid to training aspiring computational biologists to handle new and unanticipated problems. This text is intended to fill that gap by teaching students how to reason about developing formal mathematical models of biological systems that are amenable to computational analysis. It collects in one place a selection of broadly useful models, algorithms, and theoretical analysis tools normally found scattered among many other disciplines. It thereby gives the aspiring student a bag of tricks that will serve him or her well in modeling problems drawn from numerous subfields of biology. These techniques are taught from the perspective of what the practitioner needs to know to use them effectively, supplemented with references for further reading on more advanced use of each method covered. The text, which grew out of a class taught at Carnegie Mellon University, covers models for optimization, simulation and sampling, and parameter tuning. These topics provide a general framework for learning how to formulate mathematical models of biological systems, what techniques are available to work with these models, and how to fit the models to particular systems. Their application is illustrated by many examples drawn from a variety of biological disciplines and several extended case studies that show how the methods described have been applied to real problems in biology.
Book Synopsis Computational Biology: Hearing Before the Committee on Commerce, Science, & Transportation, U.S. Senate by : Phillip C. Badger
Download or read book Computational Biology: Hearing Before the Committee on Commerce, Science, & Transportation, U.S. Senate written by Phillip C. Badger and published by DIANE Publishing. This book was released on 1999-09 with total page 95 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis An Introduction to Formal Languages and Machine Computation by : Song Y. Yan
Download or read book An Introduction to Formal Languages and Machine Computation written by Song Y. Yan and published by World Scientific. This book was released on 1998 with total page 424 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a concise and modern introduction to Formal Languages and Machine Computation, a group of disparate topics in the theory of computation, which includes formal languages, automata theory, turing machines, computability, complexity, number-theoretic computation, public-key cryptography, and some new models of computation, such as quantum and biological computation. As the theory of computation is a subject based on mathematics, a thorough introduction to a number of relevant mathematical topics, including mathematical logic, set theory, graph theory, modern abstract algebra, and particularly number theory, is given in the first chapter of the book. The book can be used either as a textbook for an undergraduate course, for a first-year graduate course, or as a basic reference in the field.
Book Synopsis Introduction to Computational Biology by : Bernhard Haubold
Download or read book Introduction to Computational Biology written by Bernhard Haubold and published by Springer Science & Business Media. This book was released on 2006-08-09 with total page 329 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written with the advanced undergraduate in mind, this book introduces into the field of Bioinformatics. The authors explain the computational and conceptional background to the analysis of large-scale sequence data. Many of the corresponding analysis methods are rooted in evolutionary thinking, which serves as a common thread throughout the book. The focus is on methods of comparative genomics and subjects covered include: alignments, gene finding, phylogeny, and the analysis of single nucleotide polymorphisms (SNPs). The volume contains exercises, questions & answers to selected problems.
Book Synopsis Computational Methods for Estimating the Kinetic Parameters of Biological Systems by : Quentin Vanhaelen
Download or read book Computational Methods for Estimating the Kinetic Parameters of Biological Systems written by Quentin Vanhaelen and published by Humana. This book was released on 2022-12-24 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This detailed book provides an overview of various classes of computational techniques, including machine learning techniques, commonly used for evaluating kinetic parameters of biological systems. Focusing on three distinct situations, the volume covers the prediction of the kinetics of enzymatic reactions, the prediction of the kinetics of protein-protein or protein-ligand interactions (binding rates, dissociation rates, binding affinities), and the prediction of relatively large set of kinetic rates of reactions usually found in quantitative models of large biological networks. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of expert implementation advice that leads to successful results. Authoritative and practical, Computational Methods for Estimating the Kinetic Parameters of Biological Systems will be of great interest for researchers working through the challenge of identifying the best type of algorithm and who would like to use or develop a computational method for the estimation of kinetic parameters.
Book Synopsis The Physical Signature of Computation by : Neal G Anderson
Download or read book The Physical Signature of Computation written by Neal G Anderson and published by Oxford University Press. This book was released on 2024-09 with total page 343 pages. Available in PDF, EPUB and Kindle. Book excerpt: Anderson and Piccinini offer the most systematic, rigorous, and comprehensive account of computational implementation to date. Their robust mapping account holds that the key for establishing that a computation is physically implemented is that the physical states bear neither more nor less information than the computational states they map onto.
Book Synopsis Swarm Intelligence and Bio-Inspired Computation by : Xin-She Yang
Download or read book Swarm Intelligence and Bio-Inspired Computation written by Xin-She Yang and published by Newnes. This book was released on 2013-05-16 with total page 450 pages. Available in PDF, EPUB and Kindle. Book excerpt: Swarm Intelligence and bio-inspired computation have become increasing popular in the last two decades. Bio-inspired algorithms such as ant colony algorithms, bat algorithms, bee algorithms, firefly algorithms, cuckoo search and particle swarm optimization have been applied in almost every area of science and engineering with a dramatic increase of number of relevant publications. This book reviews the latest developments in swarm intelligence and bio-inspired computation from both the theory and application side, providing a complete resource that analyzes and discusses the latest and future trends in research directions. It can help new researchers to carry out timely research and inspire readers to develop new algorithms. With its impressive breadth and depth, this book will be useful for advanced undergraduate students, PhD students and lecturers in computer science, engineering and science as well as researchers and engineers. Focuses on the introduction and analysis of key algorithms Includes case studies for real-world applications Contains a balance of theory and applications, so readers who are interested in either algorithm or applications will all benefit from this timely book.
Book Synopsis Mathematical Systems Theory in Biology, Communications, Computation and Finance by : Joachim Rosenthal
Download or read book Mathematical Systems Theory in Biology, Communications, Computation and Finance written by Joachim Rosenthal and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 508 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume contains survey and research articles by some of the leading researchers in mathematical systems theory - a vibrant research area in its own right. Many authors have taken special care that their articles are self-contained and accessible also to non-specialists.
