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Statistical Mechanics Of Cellular Systems And Processes
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Book Synopsis Statistical Mechanics of Cellular Systems and Processes by : Muhammad H. Zaman
Download or read book Statistical Mechanics of Cellular Systems and Processes written by Muhammad H. Zaman and published by Cambridge University Press. This book was released on 2009-03-26 with total page 233 pages. Available in PDF, EPUB and Kindle. Book excerpt: Traditionally, statistical mechanics-based treatment of biological systems has focused on the molecular level, with larger systems being ignored. This book fills that gap, addressing recent developments in the field, in particular, the multi-scale nature of biological problems, ranging from the genetic to the multi-cellular, tissue and organ level.
Book Synopsis Probabilistic Cellular Automata by : Pierre-Yves Louis
Download or read book Probabilistic Cellular Automata written by Pierre-Yves Louis and published by Springer. This book was released on 2018-02-21 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book explores Probabilistic Cellular Automata (PCA) from the perspectives of statistical mechanics, probability theory, computational biology and computer science. PCA are extensions of the well-known Cellular Automata models of complex systems, characterized by random updating rules. Thanks to their probabilistic component, PCA offer flexible computing tools for complex numerical constructions, and realistic simulation tools for phenomena driven by interactions among a large number of neighboring structures. PCA are currently being used in various fields, ranging from pure probability to the social sciences and including a wealth of scientific and technological applications. This situation has produced a highly diversified pool of theoreticians, developers and practitioners whose interaction is highly desirable but can be hampered by differences in jargon and focus. This book – just as the workshop on which it is based – is an attempt to overcome these difference and foster interest among newcomers and interaction between practitioners from different fields. It is not intended as a treatise, but rather as a gentle introduction to the role and relevance of PCA technology, illustrated with a number of applications in probability, statistical mechanics, computer science, the natural sciences and dynamical systems. As such, it will be of interest to students and non-specialists looking to enter the field and to explore its challenges and open issues.
Book Synopsis Thermodynamics and Statistical Mechanics of Macromolecular Systems by : Michael Bachmann
Download or read book Thermodynamics and Statistical Mechanics of Macromolecular Systems written by Michael Bachmann and published by Cambridge University Press. This book was released on 2014-04-24 with total page 359 pages. Available in PDF, EPUB and Kindle. Book excerpt: The structural mechanics of proteins that fold into functional shapes, polymers that aggregate and form clusters, and organic macromolecules that bind to inorganic matter can only be understood through statistical physics and thermodynamics. This book reviews the statistical mechanics concepts and tools necessary for the study of structure formation processes in macromolecular systems that are essentially influenced by finite-size and surface effects. Readers are introduced to molecular modeling approaches, advanced Monte Carlo simulation techniques, and systematic statistical analyses of numerical data. Applications to folding, aggregation, and substrate adsorption processes of polymers and proteins are discussed in great detail. Particular emphasis is placed on the reduction of complexity by coarse-grained modeling, which allows for the efficient, systematic investigation of structural phases and transitions. Providing insight into modern research at this interface between physics, chemistry, biology, and nanotechnology, this book is an excellent reference for graduate students and researchers.
Book Synopsis Nonlinear Phenomena in Fluids, Solids and other Complex Systems by : P. Cordero
Download or read book Nonlinear Phenomena in Fluids, Solids and other Complex Systems written by P. Cordero and published by Elsevier. This book was released on 2012-12-02 with total page 494 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book contains short courses in current topics in nonlinear physics given by distinguished professionals in their fields. These include: nonlinear fluid dynamics, transition to turbulence, quantum hall effect, cellular automata and neural networks, phase transitions. These courses are up to date and are aimed at a wide audience, in particular to graduate students and researchers in the field of nonlinear physics.
Book Synopsis Cellular Automata And Complexity by : Stephen Wolfram
Download or read book Cellular Automata And Complexity written by Stephen Wolfram and published by CRC Press. This book was released on 2018-03-08 with total page 528 pages. Available in PDF, EPUB and Kindle. Book excerpt: Are mathematical equations the best way to model nature? For many years it had been assumed that they were. But in the early 1980s, Stephen Wolfram made the radical proposal that one should instead build models that are based directly on simple computer programs. Wolfram made a detailed study of a class of such models known as cellular automata, and discovered a remarkable fact: that even when the underlying rules are very simple, the behaviour they produce can be highly complex, and can mimic many features of what we see in nature. And based on this result, Wolfram began a program of research to develop what he called A Science of Complexity."The results of Wolfram's work found many applications, from the so-called Wolfram Classification central to fields such as artificial life, to new ideas about cryptography and fluid dynamics. This book is a collection of Wolfram's original papers on cellular automata and complexity. Some of these papers are widely known in the scientific community others have never been published before. Together, the papers provide a highly readable account of what has become a major new field of science, with important implications for physics, biology, economics, computer science and many other areas.
Book Synopsis Cellular Automata Modeling of Physical Systems by : Bastien Chopard
Download or read book Cellular Automata Modeling of Physical Systems written by Bastien Chopard and published by Cambridge University Press. This book was released on 2005-06-30 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a self-contained introduction to cellular automata and lattice Boltzmann techniques. Beginning with a chapter introducing the basic concepts of this developing field, a second chapter describes methods used in cellular automata modeling. Following chapters discuss the statistical mechanics of lattice gases, diffusion phenomena, reaction-diffusion processes and non-equilibrium phase transitions. A final chapter looks at other models and applications, such as wave propagation and multiparticle fluids. With a pedagogic approach, the volume focuses on the use of cellular automata in the framework of equilibrium and non-equilibrium statistical physics. It also emphasises application-oriented problems such as fluid dynamics and pattern formation. The book contains many examples and problems. A glossary and a detailed bibliography are also included. This will be a valuable book for graduate students and researchers working in statistical physics, solid state physics, chemical physics and computer science.
Book Synopsis Numerical Methods and Advanced Simulation in Biomechanics and Biological Processes by : Miguel Cerrolaza
Download or read book Numerical Methods and Advanced Simulation in Biomechanics and Biological Processes written by Miguel Cerrolaza and published by Academic Press. This book was released on 2017-10-17 with total page 454 pages. Available in PDF, EPUB and Kindle. Book excerpt: Numerical Methods and Advanced Simulation in Biomechanics and Biological Processes covers new and exciting modeling methods to help bioengineers tackle problems for which the Finite Element Method is not appropriate. The book covers a wide range of important subjects in the field of numerical methods applied to biomechanics, including bone biomechanics, tissue and cell mechanics, 3D printing, computer assisted surgery and fluid dynamics. Modeling strategies, technology and approaches are continuously evolving as the knowledge of biological processes increases. Both theory and applications are covered, making this an ideal book for researchers, students and R&D professionals. Provides non-conventional analysis methods for modeling Covers the Discrete Element Method (DEM), Particle Methods (PM), MessLess and MeshFree Methods (MLMF), Agent-Based Methods (ABM), Lattice-Boltzmann Methods (LBM) and Boundary Integral Methods (BIM) Includes contributions from several world renowned experts in their fields Compares pros and cons of each method to help you decide which method is most applicable to solving specific problems
Book Synopsis Applications Of Field Theory Methods In Statistical Physics Of Nonequilibrium Systems by : Bohdan I Lev
Download or read book Applications Of Field Theory Methods In Statistical Physics Of Nonequilibrium Systems written by Bohdan I Lev and published by World Scientific. This book was released on 2021-02-18 with total page 352 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book formulates a unified approach to the description of many-particle systems combining the methods of statistical physics and quantum field theory. The benefits of such an approach are in the description of phase transitions during the formation of new spatially inhomogeneous phases, as well in describing quasi-equilibrium systems with spatially inhomogeneous particle distributions (for example, self-gravitating systems) and metastable states.The validity of the methods used in the statistical description of many-particle systems and models (theory of phase transitions included) is discussed and compared. The idea of using the quantum field theory approach and related topics (path integration, saddle-point and stationary-phase methods, Hubbard-Stratonovich transformation, mean-field theory, and functional integrals) is described in detail to facilitate further understanding and explore more applications.To some extent, the book could be treated as a brief encyclopedia of methods applicable to the statistical description of spatially inhomogeneous equilibrium and metastable particle distributions. Additionally, the general approach is not only formulated, but also applied to solve various practically important problems (gravitating gas, Coulomb-like systems, dusty plasmas, thermodynamics of cellular structures, non-uniform dynamics of gravitating systems, etc.).
Book Synopsis Function and Regulation of Cellular Systems by : Andreas Deutsch
Download or read book Function and Regulation of Cellular Systems written by Andreas Deutsch and published by Birkhäuser. This book was released on 2012-12-06 with total page 448 pages. Available in PDF, EPUB and Kindle. Book excerpt: Current biological research demands the extensive use of sophisticated mathematical methods and computer-aided analysis of experiments and data. This highly interdisciplinary volume focuses on structural, dynamical and functional aspects of cellular systems and presents corresponding experiments and mathematical models. The book may serve as an introduction for biologists, mathematicians and physicists to key questions in cellular systems which can be studied with mathematical models. Recent model approaches are presented with applications in cellular metabolism, intra- and intercellular signaling, cellular mechanics, network dynamics and pattern formation. In addition, applied issues such as tumor cell growth, dynamics of the immune system and biotechnology are included.
Book Synopsis Thermodynamics and Statistical Mechanics by : Robert J. Hardy
Download or read book Thermodynamics and Statistical Mechanics written by Robert J. Hardy and published by John Wiley & Sons. This book was released on 2014-06-12 with total page 536 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook brings together the fundamentals of the macroscopic and microscopic aspects of thermal physics by presenting thermodynamics and statistical mechanics as complementary theories based on small numbers of postulates. The book is designed to give the instructor flexibility in structuring courses for advanced undergraduates and/or beginning graduate students and is written on the principle that a good text should also be a good reference. The presentation of thermodynamics follows the logic of Clausius and Kelvin while relating the concepts involved to familiar phenomena and the modern student's knowledge of the atomic nature of matter. Another unique aspect of the book is the treatment of the mathematics involved. The essential mathematical concepts are briefly reviewed before using them, and the similarity of the mathematics to that employed in other fields of physics is emphasized. The text gives in depth treatments of low density gases, harmonic solids, magnetic and dielectric materials, phase transitions, and the concept of entropy. The microcanonical, canonical, and grand canonical ensembles of statistical mechanics are derived and used as the starting point for the analysis of fluctuations, blackbody radiation, the Maxwell distribution, Fermi-Dirac statistics, Bose-Einstein condensation, and the statistical basis of computer simulations. Supplementary material including PowerPoint slides and detailed worked solutions can be downloaded online at http://booksupport.wiley.com
Book Synopsis Hybrid Neural Systems by : Stefan Wermter
Download or read book Hybrid Neural Systems written by Stefan Wermter and published by Springer Science & Business Media. This book was released on 2000-03-29 with total page 411 pages. Available in PDF, EPUB and Kindle. Book excerpt: Hybrid neural systems are computational systems which are based mainly on artificial neural networks and allow for symbolic interpretation or interaction with symbolic components. This book is derived from a workshop held during the NIPS'98 in Denver, Colorado, USA, and competently reflects the state of the art of research and development in hybrid neural systems. The 26 revised full papers presented together with an introductory overview by the volume editors have been through a twofold process of careful reviewing and revision. The papers are organized in the following topical sections: structured connectionism and rule representation; distributed neural architectures and language processing; transformation and explanation; robotics, vision, and cognitive approaches.
Book Synopsis Statistical Physics for Biological Matter by : Wokyung Sung
Download or read book Statistical Physics for Biological Matter written by Wokyung Sung and published by Springer. This book was released on 2018-10-19 with total page 435 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to cover a broad range of topics in statistical physics, including statistical mechanics (equilibrium and non-equilibrium), soft matter and fluid physics, for applications to biological phenomena at both cellular and macromolecular levels. It is intended to be a graduate level textbook, but can also be addressed to the interested senior level undergraduate. The book is written also for those involved in research on biological systems or soft matter based on physics, particularly on statistical physics. Typical statistical physics courses cover ideal gases (classical and quantum) and interacting units of simple structures. In contrast, even simple biological fluids are solutions of macromolecules, the structures of which are very complex. The goal of this book to fill this wide gap by providing appropriate content as well as by explaining the theoretical method that typifies good modeling, namely, the method of coarse-grained descriptions that extract the most salient features emerging at mesoscopic scales. The major topics covered in this book include thermodynamics, equilibrium statistical mechanics, soft matter physics of polymers and membranes, non-equilibrium statistical physics covering stochastic processes, transport phenomena and hydrodynamics. Generic methods and theories are described with detailed derivations, followed by applications and examples in biology. The book aims to help the readers build, systematically and coherently through basic principles, their own understanding of nonspecific concepts and theoretical methods, which they may be able to apply to a broader class of biological problems.
Book Synopsis Physics of Multiantenna Systems and Broadband Processing by : T. K. Sarkar
Download or read book Physics of Multiantenna Systems and Broadband Processing written by T. K. Sarkar and published by John Wiley & Sons. This book was released on 2008-07-10 with total page 589 pages. Available in PDF, EPUB and Kindle. Book excerpt: An analysis of the physics of multiantenna systems Multiple-Input Multiple-Output (MIMO) technology is one of the current hot topics in emerging wireless technologies. This book fills the important need for an authoritative reference on the merits of MIMO systems based on physics and provides a sound theoretical basis for its practical implementation. The book also addresses the important issues related to broadband adaptive processing. Written by three internationally known researchers, Physics of Multiantenna Systems and Broadband Processing: Provides a thorough discussion of the physical and mathematical principles involved in MIMO and adaptive systems Examines the electromagnetic framework of wireless communications systems Uses Maxwell's theory to provide a system-based framework for the abstract concept of channel capacity Performs various numerical simulations to observe how a typical system will behave in practice Provides a mathematical formulation for broadband adaptive processing and direction-of-arrival estimation using real antenna arrays Integrates signal processing and electromagnetics to address the performance of realistic multiantenna systems With Physics of Multiantenna Systems and Broadband Processing, communication systems engineers, graduate students, researchers, and developers will gain a thorough, scientific understanding of this important new technology.
Book Synopsis Statistical Mechanics of Lattice Systems by : Sacha Friedli
Download or read book Statistical Mechanics of Lattice Systems written by Sacha Friedli and published by Cambridge University Press. This book was released on 2017-11-23 with total page 643 pages. Available in PDF, EPUB and Kindle. Book excerpt: A self-contained, mathematical introduction to the driving ideas in equilibrium statistical mechanics, studying important models in detail.
Book Synopsis Cell Language Theory, The: Connecting Mind And Matter by : Ji Sungchul
Download or read book Cell Language Theory, The: Connecting Mind And Matter written by Ji Sungchul and published by World Scientific. This book was released on 2017-11-24 with total page 612 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book represents the results of 45 years of research on a wide range of topics, including atomic physics, single-molecule enzymology, whole-cell metabolism, physiology, pharmacology, linguistics, semiotics, and cosmology. It describes the first comprehensive molecular theory of the genotype-phenotype coupling based on two key theoretical concepts: (i) the conformon, the conformational wave packet in biopolymers carrying both the free energy and genetic information; and (ii) the intracellular dissipative structures, the chemical concentration waves inside the cell that serve as the immediate drivers of all cell functions. Conformons provide the driving forces for all molecular machines in the cell, and intracellular dissipative structures coordinate intra- and intercellular processes such as gene expression and cell-cell communications. One of the predictions made by the cell language theory (CLT) is that there are two forms of genetic information — the Watson–Crick genes transmitting information in time (identified with DNA), and the Prigoginian genes transmitting information in space (identified with RNA expression profiles). The former is analogous to sheet music or written language and the latter is akin to audio music or spoken language, both being coupled by conformons acting as the analog of the pianist. The new theory of DNA structure and function constructed on the basis of CLT can rationally account for most of the puzzling findings recently unearthed by the ENCODE (Encyclopedia of DNA Elements) project. The Cell Language Theory has important applications in biomedical sciences including drug discovery research and personalized medicine on the one hand and in the mind-body research and consciousness studies on the other. Contents: PrefaceAbout the AuthorAcknowledgementsIntroductionKey Terms and ConceptsThe BhopalatorCell LanguageMatrix Mathematics of GeneticsBiosemioticsApplications of the Cell Language Theory to Biomedical SciencesThe Universality of the Planckian Distribution EquationThe Universality of the Irreducible Triadic RelationThe Philosophical Implications of the Cell Language TheoryConclusionsReferencesAppendicesIndex Readership: Students, researchers and practitioners of the biomedical sciences and mind-body research and consciousness studies Keywords: Conformons;Cell Language Theory;Intracellular Dissipative Structures;Watson-Crick Gene;Prigoginian GeneReview:0
Book Synopsis Stochastic Processes in Cell Biology by : Paul C. Bressloff
Download or read book Stochastic Processes in Cell Biology written by Paul C. Bressloff and published by Springer Nature. This book was released on 2022-01-10 with total page 724 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book develops the theory of continuous and discrete stochastic processes within the context of cell biology. In the second edition the material has been significantly expanded, particularly within the context of nonequilibrium and self-organizing systems. Given the amount of additional material, the book has been divided into two volumes, with volume I mainly covering molecular processes and volume II focusing on cellular processes. A wide range of biological topics are covered in the new edition, including stochastic ion channels and excitable systems, molecular motors, stochastic gene networks, genetic switches and oscillators, epigenetics, normal and anomalous diffusion in complex cellular environments, stochastically-gated diffusion, active intracellular transport, signal transduction, cell sensing, bacterial chemotaxis, intracellular pattern formation, cell polarization, cell mechanics, biological polymers and membranes, nuclear structure and dynamics, biological condensates, molecular aggregation and nucleation, cellular length control, cell mitosis, cell motility, cell adhesion, cytoneme-based morphogenesis, bacterial growth, and quorum sensing. The book also provides a pedagogical introduction to the theory of stochastic and nonequilibrium processes – Fokker Planck equations, stochastic differential equations, stochastic calculus, master equations and jump Markov processes, birth-death processes, Poisson processes, first passage time problems, stochastic hybrid systems, queuing and renewal theory, narrow capture and escape, extreme statistics, search processes and stochastic resetting, exclusion processes, WKB methods, large deviation theory, path integrals, martingales and branching processes, numerical methods, linear response theory, phase separation, fluctuation-dissipation theorems, age-structured models, and statistical field theory. This text is primarily aimed at graduate students and researchers working in mathematical biology, statistical and biological physicists, and applied mathematicians interested in stochastic modeling. Applied probabilists should also find it of interest. It provides significant background material in applied mathematics and statistical physics, and introduces concepts in stochastic and nonequilibrium processes via motivating biological applications. The book is highly illustrated and contains a large number of examples and exercises that further develop the models and ideas in the body of the text. It is based on a course that the author has taught at the University of Utah for many years.
Download or read book Philosophy of Complex Systems written by and published by Elsevier. This book was released on 2011-05-23 with total page 952 pages. Available in PDF, EPUB and Kindle. Book excerpt: The domain of nonlinear dynamical systems and its mathematical underpinnings has been developing exponentially for a century, the last 35 years seeing an outpouring of new ideas and applications and a concomitant confluence with ideas of complex systems and their applications from irreversible thermodynamics. A few examples are in meteorology, ecological dynamics, and social and economic dynamics. These new ideas have profound implications for our understanding and practice in domains involving complexity, predictability and determinism, equilibrium, control, planning, individuality, responsibility and so on. Our intention is to draw together in this volume, we believe for the first time, a comprehensive picture of the manifold philosophically interesting impacts of recent developments in understanding nonlinear systems and the unique aspects of their complexity. The book will focus specifically on the philosophical concepts, principles, judgments and problems distinctly raised by work in the domain of complex nonlinear dynamical systems, especially in recent years. -Comprehensive coverage of all main theories in the philosophy of Complex Systems -Clearly written expositions of fundamental ideas and concepts -Definitive discussions by leading researchers in the field -Summaries of leading-edge research in related fields are also included
