Quantitative Analysis of Genetic Variations Using Molecular Affinity and MALDI-TOF Mass Spectrometry

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Publisher :
ISBN 13 :
Total Pages : 39 pages
Book Rating : 4.:/5 (213 download)

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Book Synopsis Quantitative Analysis of Genetic Variations Using Molecular Affinity and MALDI-TOF Mass Spectrometry by : Aana Moon Kim

Download or read book Quantitative Analysis of Genetic Variations Using Molecular Affinity and MALDI-TOF Mass Spectrometry written by Aana Moon Kim and published by . This book was released on 2007 with total page 39 pages. Available in PDF, EPUB and Kindle. Book excerpt: A system for DNA quantification is demonstrated utilizing matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) and a molecular affinity system. MALDI-TOF MS can detect nucleic acids in milliseconds with high resolution, which allows for a high throughput sample analysis. The resulting mass spectra can produce more accurate results than conventional methods based on gel electrophoresis especially when secondary structures exist in the sample DNA molecules. Secondary DNA structures can lead to incomplete separation in the gel and reduce the accuracy in DNA sequence determination. MALDI-TOF MS measures the intrinsic property of DNA mass, and thus allows unambiguous detection of DNA fragments. MALDI TOF MS can be further facilitated by molecular affinity systems such as biotin-streptavidin as they increase the accuracy and throughput of MS. Our approach is based on SPC-SBE, a previously developed method for high throughput genotyping employing molecular affinity, and involves optimization in both sample preparation and MALDI-TOF MS spectral analysis by signal processing. Creating small sample spots with a stainless steel needle to reduce sample crystal heterogeneity improved the DNA quantification system. To further reduce the impact of salt adduct peaks, signal-processing techniques were used for better signal separation. A basic signal processing technique involved ensemble average and ensemble standard deviations of spectra. Ensemble averaging is a simple and powerful signal processing technique to reduce noise. Additionally, the microbead pipette tip device was tested as a new method to rapidly isolate biotinylated DNA fragments and increase throughput of the molecular affinity system. We demonstrate our method provides high quantification accuracy, and therefore can be efficiently used for the application of rapid high-throughput gene expression monitoring.

Mass Spectrometry and Genomic Analysis

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Publisher : Springer Science & Business Media
ISBN 13 : 9780792371731
Total Pages : 170 pages
Book Rating : 4.3/5 (717 download)

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Book Synopsis Mass Spectrometry and Genomic Analysis by : J.N. Housby

Download or read book Mass Spectrometry and Genomic Analysis written by J.N. Housby and published by Springer Science & Business Media. This book was released on 2001-10-31 with total page 170 pages. Available in PDF, EPUB and Kindle. Book excerpt: The human genome project is set to revolutionise health care and medicine in the near future. The genetic make up of each individual gives clues as to the genetic factors that predispose one to a particular genetic disease. Single Nucleotide Polymorphisms (SNPs), single base changes in the nucleotide DNA sequence of individuals, are thought to be the main cause of genetic variation. By comparing patterns of SNP allele frequencies between disease affected and control populations, disease associated SNPs can be identified and potential disease gene(s) located. These types of study necessitate genotyping of thousands of SNPs which requires the use of powerful, high throughput, systems of analysis. Mass spectrometry is fast becoming the preferred technology for this type of high throughput analysis. This book contains a collection of descriptions of some of the most outstanding advances in the field of mass spectrometry from which, I hope, the reader will be able to learn both the principles and the most up to date methods for its use in genomic analysis. It covers the general principles of the technologies and more in depth detailed descriptions for more academic reading and information. Audience: Whether you are a student, a post-doctoral researcher or experienced MS user, this book will be a stimulating addition to the analytical arena of mass spectrometry and genomic analysis.

Time-of-flight Mass Spectrometry

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ISBN 13 :
Total Pages : 360 pages
Book Rating : 4.F/5 ( download)

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Book Synopsis Time-of-flight Mass Spectrometry by : Robert J. Cotter

Download or read book Time-of-flight Mass Spectrometry written by Robert J. Cotter and published by . This book was released on 1997 with total page 360 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents the basic principles of time-of-flight (TOF) mass spectrometry with a strong emphasis on applications in biological research. It describes many innovative techniques, including orthogonal extraction, post source decay, and delayed extraction, and surveys ionization techniques used on TOF mass spectrometers such as electron impact, plasma desorption, SIMS, FAB, laser desorption, MALDI, and electrospray. The book features chapters on applications to peptides/proteins, oligonucleotides, and other biological macromolecules, and examines how techniques might be used in sequencing the human genome.

Applications of MALDI-TOF Spectroscopy

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Publisher : Springer
ISBN 13 : 3642356656
Total Pages : 220 pages
Book Rating : 4.6/5 (423 download)

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Book Synopsis Applications of MALDI-TOF Spectroscopy by : Zongwei Cai

Download or read book Applications of MALDI-TOF Spectroscopy written by Zongwei Cai and published by Springer. This book was released on 2014-07-08 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt: MALDI-ToF Mass Spectrometry for Studying Noncovalent Complexes of Biomolecules, by Stefanie Mädler, Elisabetta Boeri Erba, Renato Zenobi Application of MALDI-TOF-Mass Spectrometry to Proteome Analysis Using Stain-Free Gel Electrophoresis, by Iuliana Susnea, Bogdan Bernevic, Michael Wicke, Li Ma, Shuying Liu, Karl Schellander, Michael Przybylski MALDI Mass Spectrometry for Nucleic Acid Analysis, by Xiang Gao, Boon-Huan Tan, Richard J. Sugrue, Kai Tang Determination of Peptide and Protein Disulfide Linkages by MALDI Mass Spectrometry, by Hongmei Yang, Ning Liu, Shuying Liu MALDI In-Source Decay, from Sequencing to Imaging, by Delphine Debois, Nicolas Smargiasso, Kevin Demeure, Daiki Asakawa, Tyler A. Zimmerman, Loïc Quinton, Edwin De Pauw Advances of MALDI-TOF MS in the Analysis of Traditional Chinese Medicines, by Minghua Lu, Zongwei Cai Chemical and Biochemical Applications of MALDI TOF-MS Based on Analyzing the Small Organic Compounds, by Haoyang Wang, Zhixiong Zhao, Yinlong Guo Bioinformatic Analysis of Data Generated from MALDI Mass Spectrometry for Biomarker Discovery, by Zengyou He, Robert Z. Qi, Weichuan Yu

Applications of Toxicogenomic Technologies to Predictive Toxicology and Risk Assessment

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Publisher : National Academies Press
ISBN 13 : 0309112982
Total Pages : 300 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis Applications of Toxicogenomic Technologies to Predictive Toxicology and Risk Assessment by : National Research Council

Download or read book Applications of Toxicogenomic Technologies to Predictive Toxicology and Risk Assessment written by National Research Council and published by National Academies Press. This book was released on 2007-12-19 with total page 300 pages. Available in PDF, EPUB and Kindle. Book excerpt: The new field of toxicogenomics presents a potentially powerful set of tools to better understand the health effects of exposures to toxicants in the environment. At the request of the National Institute of Environmental Health Sciences, the National Research Council assembled a committee to identify the benefits of toxicogenomics, the challenges to achieving them, and potential approaches to overcoming such challenges. The report concludes that realizing the potential of toxicogenomics to improve public health decisions will require a concerted effort to generate data, make use of existing data, and study data in new waysâ€"an effort requiring funding, interagency coordination, and data management strategies.

Electrospray Ionization Mass Spectrometry

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Publisher : Wiley-Interscience
ISBN 13 :
Total Pages : 610 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis Electrospray Ionization Mass Spectrometry by : Richard B. Cole

Download or read book Electrospray Ionization Mass Spectrometry written by Richard B. Cole and published by Wiley-Interscience. This book was released on 1997-05-06 with total page 610 pages. Available in PDF, EPUB and Kindle. Book excerpt: Comprehensive, up-to-date coverage of a revolutionary technique Electrospray ionization mass spectrometry (ESI-MS) has completely changed the way physicists, chemists, and biologists view the study of large molecules. The technique derives detailed information about molecular weights and structures from extremely small sample quantities. ESI-MS can create highly charged forms of very high molecular weight compounds, it is naturally compatible with many types of separation techniques, and it allows noncovalent interactions between molecules in solution to be preserved in the gas phase. But many researchers may not use the technique to its full potential because they are unfamiliar with the different perspectives of its underlying processes, the varied approaches to implementation, and the wide-ranging utility of the technique. In this book, Richard B. Cole and an assemblage of leading researchers present a single-volume compilation of different approaches to the understanding and exploitation of ESI-MS. This comprehensive guide: * Examines the physical and chemical aspects of the electrospray process and describes the events involved in ion formation as well as the electro-chemical phenomena that are central to charged droplet formation during the process * Explores the coupling of electrospray ionization to various mass spectrometers, including quadrupole, magnetic, time-of-flight, quadrupole ion trap, and Fourier transform ion cyclotron resonance instruments * Describes recent progress in interfacing ESI with solution-based separation techniques, including liquid chromatography and capillary electrophoresis * Charts the rapid development of ESI applications and categorizes them by compound type: peptides and proteins, nucleic acids and their constituents, carbohydrates and lipids, small molecules related to pharmacology and drug metabolism, and organometallics and inorganic compounds Electrospray Ionization Mass Spectrometry is the indispensable handbook and reference for anyone who wishes to understand, implement, or apply this technique, including researchers in chemistry, metallochemistry, biochemistry, biology, pharmacology, and physics.

Molecular Testing in Laboratory Medicine

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Publisher : Amer. Assoc. for Clinical Chemistry
ISBN 13 : 9781890883607
Total Pages : 396 pages
Book Rating : 4.8/5 (836 download)

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Book Synopsis Molecular Testing in Laboratory Medicine by : David E. Bruns

Download or read book Molecular Testing in Laboratory Medicine written by David E. Bruns and published by Amer. Assoc. for Clinical Chemistry. This book was released on 2002 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Tietz Textbook of Clinical Chemistry and Molecular Diagnostics

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Publisher : Elsevier Health Sciences
ISBN 13 : 0323548482
Total Pages : 1888 pages
Book Rating : 4.3/5 (235 download)

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Book Synopsis Tietz Textbook of Clinical Chemistry and Molecular Diagnostics by : Nader Rifai

Download or read book Tietz Textbook of Clinical Chemistry and Molecular Diagnostics written by Nader Rifai and published by Elsevier Health Sciences. This book was released on 2017-01-16 with total page 1888 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Tietz Textbook of Clinical Chemistry and Molecular Diagnostics, 6th Edition provides the most current and authoritative guidance on selecting, performing, and evaluating the results of new and established laboratory tests. This classic clinical chemistry reference offers encyclopedic coverage detailing everything you need to know, including: analytical criteria for the medical usefulness of laboratory tests, variables that affect tests and results, laboratory medicine, applications of statistical methods, and most importantly clinical utility and interpretation of laboratory tests. It is THE definitive reference in clinical chemistry and molecular diagnostics, now fully searchable and with quarterly content updates, podcasts, clinical cases, animations, and extended content online through Expert Consult. Analytical criteria focus on the medical usefulness of laboratory procedures. Reference ranges show new approaches for establishing these ranges — and provide the latest information on this topic. Lab management and costs gives students and chemists the practical information they need to assess costs, allowing them to do their job more efficiently and effectively. Statistical methods coverage provides you with information critical to the practice of clinical chemistry. Internationally recognized chapter authors are considered among the best in their field. Two-color design highlights important features, illustrations, and content to help you find information easier and faster. NEW! Internationally recognized chapter authors are considered among the best in their field. NEW! Expert Consult features fully searchable text, quarterly content updates, clinical case studies, animations, podcasts, atlases, biochemical calculations, multiple-choice questions, links to Medline, an image collection, and audio interviews. You will now enjoy an online version making utility of this book even greater. UPDATED! Expanded Molecular Diagnostics section with 12 chapters that focus on emerging issues and techniques in the rapidly evolving and important field of molecular diagnostics and genetics ensures this text is on the cutting edge and of the most value. NEW! Comprehensive list of Reference Intervals for children and adults with graphic displays developed using contemporary instrumentation. NEW! Standard and international units of measure make this text appropriate for any user — anywhere in the world. NEW! 22 new chapters that focus on applications of mass spectrometry, hematology, transfusion medicine, microbiology, biobanking, biomarker utility in the pharmaceutical industry and more! NEW! Expert senior editors, Nader Rifai, Carl Wittwer and Rita Horvath, bring fresh perspectives and help ensure the most current information is presented. UPDATED! Thoroughly revised and peer-reviewed chapters provide you with the most current information possible.

Mass Spectrometry for Biotechnology

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Publisher : Elsevier
ISBN 13 : 0080535844
Total Pages : 179 pages
Book Rating : 4.0/5 (85 download)

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Book Synopsis Mass Spectrometry for Biotechnology by : Gary Siuzdak

Download or read book Mass Spectrometry for Biotechnology written by Gary Siuzdak and published by Elsevier. This book was released on 1996-02-12 with total page 179 pages. Available in PDF, EPUB and Kindle. Book excerpt: If you investigate biological systems and might use mass spectrometry in your research but need to know more about it, this book is for you. It introduces the fundamental concepts of mass spectrometry and how mass spectrometers work. It also presents recent advancements particularly interesting to bio-researchers in an easy-to-understand manner that does not require extensive background in chemistry, math, or physics. Glossary of basic terms Abundant illustrations Examples of applications Practical tips on using mass spectrometric techniques Useful for peptide, protein, oligonucleotide, and carbohydrate analysis Simplified description of mass spectrometry including: Matrix-Assisted Laser Desorption/Ionization (MALDI) Electrospray Ionization (ESI) Fast Atom/Ion Bombardment (FAB)

Proteome Research

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Publisher : Springer Science & Business Media
ISBN 13 : 9783540627531
Total Pages : 270 pages
Book Rating : 4.6/5 (275 download)

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Book Synopsis Proteome Research by : Marc R. Wilkins

Download or read book Proteome Research written by Marc R. Wilkins and published by Springer Science & Business Media. This book was released on 1997 with total page 270 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduction to the proteome (K. L. Williams, D. F. Hochstrasser). Two-dimensional electrophoresis: the state of the art and future directions (B. R. Herbert, J.-C. Sanchez, L. Bini). large-scale comparative protein modeling ( M. C. Peitsch, N. Guex); Clinical and biomedical applications of proteomics (D. F. Hochstrasser). Biological applications of proteomics (K. L. Williams, V. Pallini). Conclusions (D. F. Hochstrasser, L. Williams). Index.

Molecular Epidemiology

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Publisher : Academic Press
ISBN 13 : 0323138578
Total Pages : 609 pages
Book Rating : 4.3/5 (231 download)

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Book Synopsis Molecular Epidemiology by : Paul A. Schulte

Download or read book Molecular Epidemiology written by Paul A. Schulte and published by Academic Press. This book was released on 2012-12-02 with total page 609 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book will serve as a primer for both laboratory and field scientists who are shaping the emerging field of molecular epidemiology. Molecular epidemiology utilizes the same paradigm as traditional epidemiology but uses biological markers to identify exposure, disease or susceptibility. Schulte and Perera present the epidemiologic methods pertinent to biological markers. The book is also designed to enumerate the considerations necessary for valid field research and provide a resource on the salient and subtle features of biological indicators.

Principles and Applications of Clinical Mass Spectrometry

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Publisher : Elsevier
ISBN 13 : 0128160640
Total Pages : 218 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Principles and Applications of Clinical Mass Spectrometry by : Nader Rifai

Download or read book Principles and Applications of Clinical Mass Spectrometry written by Nader Rifai and published by Elsevier. This book was released on 2018-06-26 with total page 218 pages. Available in PDF, EPUB and Kindle. Book excerpt: Principles and Applications of Clinical Mass Spectrometry: Small Molecules, Peptides, and Pathogens is a concise resource for quick implementation of mass spectrometry methods in clinical laboratory work. Focusing on the practical use of these techniques, the first half of the book covers principles of chromatographic separations, principles and types of mass spectrometers, and sample preparation for analysis; the second half outlines the main applications of this technology within clinical laboratory settings, including determination of small molecules and peptides, as well as pathogen identification. A thorough yet succinct guide to using mass spectrometry technology in the clinical laboratory, Principles and Applications of Clinical Mass Spectrometry: Small Molecules, Peptides, and Pathogens is an essential resource for chemists, pharmaceutical and biotech researchers, certain government agencies, and standardization groups. Provides concrete examples of the main applications of mass spectrometry technology Describes current capabilities of the LC- and MS-based analytical methods Details methods for successful analytical work in the field

Tietz Textbook of Clinical Chemistry and Molecular Diagnostics - E-Book

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Publisher : Elsevier Health Sciences
ISBN 13 : 1455759422
Total Pages : 2259 pages
Book Rating : 4.4/5 (557 download)

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Book Synopsis Tietz Textbook of Clinical Chemistry and Molecular Diagnostics - E-Book by : Carl A. Burtis

Download or read book Tietz Textbook of Clinical Chemistry and Molecular Diagnostics - E-Book written by Carl A. Burtis and published by Elsevier Health Sciences. This book was released on 2011-12-16 with total page 2259 pages. Available in PDF, EPUB and Kindle. Book excerpt: As the definitive reference for clinical chemistry, Tietz Textbook of Clinical Chemistry and Molecular Diagnostics, 5th Edition offers the most current and authoritative guidance on selecting, performing, and evaluating results of new and established laboratory tests. Up-to-date encyclopedic coverage details everything you need to know, including: analytical criteria for the medical usefulness of laboratory procedures; new approaches for establishing reference ranges; variables that affect tests and results; the impact of modern analytical tools on lab management and costs; and applications of statistical methods. In addition to updated content throughout, this two-color edition also features a new chapter on hemostasis and the latest advances in molecular diagnostics. Section on Molecular Diagnostics and Genetics contains nine expanded chapters that focus on emerging issues and techniques, written by experts in field, including Y.M. Dennis Lo, Rossa W.K. Chiu, Carl Wittwer, Noriko Kusukawa, Cindy Vnencak-Jones, Thomas Williams, Victor Weedn, Malek Kamoun, Howard Baum, Angela Caliendo, Aaron Bossler, Gwendolyn McMillin, and Kojo S.J. Elenitoba-Johnson. Highly-respected author team includes three editors who are well known in the clinical chemistry world. Reference values in the appendix give you one location for comparing and evaluating test results. NEW! Two-color design throughout highlights important features, illustrations, and content for a quick reference. NEW! Chapter on hemostasis provides you with all the information you need to accurately conduct this type of clinical testing. NEW! Six associate editors lend even more expertise and insight to the reference. NEW! Reorganized chapters ensure that only the most current information is included.

Encyclopedia of Animal Science (Print)

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Publisher : CRC Press
ISBN 13 : 0824754964
Total Pages : 955 pages
Book Rating : 4.8/5 (247 download)

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Book Synopsis Encyclopedia of Animal Science (Print) by : Wilson G. Pond

Download or read book Encyclopedia of Animal Science (Print) written by Wilson G. Pond and published by CRC Press. This book was released on 2004-11-16 with total page 955 pages. Available in PDF, EPUB and Kindle. Book excerpt: PRINT/ONLINE PRICING OPTIONS AVAILABLE UPON REQUEST AT [email protected]

Sub-cellular Proteomics

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Publisher : Frontiers E-books
ISBN 13 : 2889193020
Total Pages : 255 pages
Book Rating : 4.8/5 (891 download)

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Book Synopsis Sub-cellular Proteomics by : Harvey Millar

Download or read book Sub-cellular Proteomics written by Harvey Millar and published by Frontiers E-books. This book was released on 2015-01-05 with total page 255 pages. Available in PDF, EPUB and Kindle. Book excerpt: Whilst significant advances have been made in whole organismal proteomics approaches, many researchers still rely on combinations of tissue selection and subcellular prefractionation methods to reduce the complexity of protein extracts from plants prior to proteomic analysis. Often this will allow identification of many lower abundance proteins of the target proteome and it may involve the selection of specific organs, cell types or the isolation of specific subcellular components. These subcellular proteomes provide insight into functions following various treatments and also contribute to the wider understanding of the entire organismal proteome by cataloguing a series of sub-proteome contents. The aim of this Research Topic is to bring together knowledge of sub cellular components in different plant species to provide a basis for accelerated research. It aims to provide a mini-review for each proposed section that summarizes the current understanding of a particular proteome, with the anticipation that every 5 - 10 years we can update these definitive publications.

Tietz Fundamentals of Clinical Chemistry and Molecular Diagnostics - E-Book

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Publisher : Elsevier Health Sciences
ISBN 13 : 0323292062
Total Pages : 1102 pages
Book Rating : 4.3/5 (232 download)

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Book Synopsis Tietz Fundamentals of Clinical Chemistry and Molecular Diagnostics - E-Book by : Carl A. Burtis

Download or read book Tietz Fundamentals of Clinical Chemistry and Molecular Diagnostics - E-Book written by Carl A. Burtis and published by Elsevier Health Sciences. This book was released on 2014-02-26 with total page 1102 pages. Available in PDF, EPUB and Kindle. Book excerpt: A condensed, easier-to-understand student version of the acclaimed Tietz Textbook of Clinical Chemistry and Molecular Diagnostics, Tietz Fundamentals of Clinical Chemistry and Molecular Diagnostics, 7th Edition uses a laboratory perspective in providing the clinical chemistry fundamentals you need to work in a real-world, clinical lab. Coverage ranges from laboratory principles to analytical techniques and instrumentation, analytes, pathophysiology, and more. New content keeps you current with the latest developments in molecular diagnostics. From highly respected clinical chemistry experts Carl Burtis and David Bruns, this textbook shows how to select and perform diagnostic lab tests, and accurately evaluate results. Authoritative, respected author team consists of two well-known experts in the clinical chemistry world. Coverage of analytical techniques and instrumentation includes optical techniques, electrochemistry, electrophoresis, chromatography, mass spectrometry, enzymology, immunochemical techniques, microchips, automation, and point of care testing. Learning objectives begin each chapter, providing measurable outcomes to achieve after completing the material. Key words are listed and defined at the beginning of each chapter, and bolded in the text. A glossary at the end of the book makes it quick and easy to look up definitions of key terms. More than 500 illustrations plus easy-to-read tables help you understand and remember key concepts. New chapters on molecular diagnostics include the principles of molecular biology, nucleic acid techniques and applications, and genomes and nucleic acid alterations, reflecting the changes in this rapidly evolving field. New content on clinical evaluation of methods, kidney function tests, and diabetes is added to this edition. NEW multiple-choice review questions at the end of each chapter allow you to measure your comprehension of the material. NEW case studies on the Evolve companion website use real-life scenarios to reinforce concepts.

Methods in Molecular Biophysics

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Publisher : Cambridge University Press
ISBN 13 : 1107056373
Total Pages : 709 pages
Book Rating : 4.1/5 (7 download)

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Book Synopsis Methods in Molecular Biophysics by : Igor N. Serdyuk

Download or read book Methods in Molecular Biophysics written by Igor N. Serdyuk and published by Cambridge University Press. This book was released on 2017-05-18 with total page 709 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive graduate textbook explaining key physical methods in biology, reflecting the very latest research in this fast-moving field.