Open Source Software In Life Science Research

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Open Source Software in Life Science Research

Author : Lee Harland
Publisher : Elsevier
ISBN 13 : 1908818247
Total Pages : 583 pages
Book Rating : 4.9/5 (88 download)

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Book Synopsis Open Source Software in Life Science Research by : Lee Harland

Download or read book Open Source Software in Life Science Research written by Lee Harland and published by Elsevier. This book was released on 2012-10-31 with total page 583 pages. Available in PDF, EPUB and Kindle. Book excerpt: The free/open source approach has grown from a minor activity to become a significant producer of robust, task-orientated software for a wide variety of situations and applications. To life science informatics groups, these systems present an appealing proposition - high quality software at a very attractive price. Open source software in life science research considers how industry and applied research groups have embraced these resources, discussing practical implementations that address real-world business problems. The book is divided into four parts. Part one looks at laboratory data management and chemical informatics, covering software such as Bioclipse, OpenTox, ImageJ and KNIME. In part two, the focus turns to genomics and bioinformatics tools, with chapters examining GenomicsTools and EBI Atlas software, as well as the practicalities of setting up an ‘omics’ platform and managing large volumes of data. Chapters in part three examine information and knowledge management, covering a range of topics including software for web-based collaboration, open source search and visualisation technologies for scientific business applications, and specific software such as DesignTracker and Utopia Documents. Part four looks at semantic technologies such as Semantic MediaWiki, TripleMap and Chem2Bio2RDF, before part five examines clinical analytics, and validation and regulatory compliance of free/open source software. Finally, the book concludes by looking at future perspectives and the economics and free/open source software in industry. Discusses a broad range of applications from a variety of sectors Provides a unique perspective on work normally performed behind closed doors Highlights the criteria used to compare and assess different approaches to solving problems

Open Source Software Policy Options for NASA Earth and Space Sciences

Author : National Academies of Sciences, Engineering, and Medicine
Publisher : National Academies Press
ISBN 13 : 0309482712
Total Pages : 109 pages
Book Rating : 4.3/5 (94 download)

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Book Synopsis Open Source Software Policy Options for NASA Earth and Space Sciences by : National Academies of Sciences, Engineering, and Medicine

Download or read book Open Source Software Policy Options for NASA Earth and Space Sciences written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2019-01-27 with total page 109 pages. Available in PDF, EPUB and Kindle. Book excerpt: Modern science is ever more driven by computations and simulations. In particular, the state of the art in space and Earth science often arises from complex simulations of climate, space weather, and astronomical phenomena. At the same time, scientific work requires data processing, presentation, and analysis through broadly available proprietary and community software.1 Implicitly or explicitly, software is central to science. Scientific discovery, understanding, validation, and interpretation are all enhanced by access to the source code of the software used by scientists. This report investigates and recommends options for NASA's Science Mission Directorate (SMD) as it considers how to establish a policy regarding open source software to complement its existing policy on open data. In particular, the report reviews existing data and software policies and the lessons learned from the implementation of those policies, summarizes community perspectives, and presents policy options and recommendations for implementing an open source software policy for NASA SMD.

Open Source Software in Life Science Research

Author : L Harland
Publisher :
ISBN 13 :
Total Pages : 582 pages
Book Rating : 4.:/5 (11 download)

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Book Synopsis Open Source Software in Life Science Research by : L Harland

Download or read book Open Source Software in Life Science Research written by L Harland and published by . This book was released on 2012 with total page 582 pages. Available in PDF, EPUB and Kindle. Book excerpt: The free/open source approach has grown from a minor activity to become a significant producer of robust, task-orientated software for a wide variety of situations and applications. To life science informatics groups, these systems present an appealing proposition - high quality software at a very attractive price. Open source software in life science research considers how industry and applied research groups have embraced these resources, discussing practical implementations that address real-world business problems. The book is divided into four parts. Part one looks at laboratory data management and chemical informatics, covering software such as Bioclipse, OpenTox, ImageJ and KNIME. In part two, the focus turns to genomics and bioinformatics tools, with chapters examining GenomicsTools and EBI Atlas software, as well as the practicalities of setting up an 'omics' platform and managing large volumes of data. Chapters in part three examine information and knowledge management, covering a range of topics including software for web-based collaboration, open source search and visualisation technologies for scientific business applications, and specific software such as DesignTracker and Utopia Documents. Part four looks at semantic technologies such as Semantic MediaWiki, TripleMap and Chem2Bio2RDF, before part five examines clinical analytics, and validation and regulatory compliance of free/open source software. Finally, the book concludes by looking at future perspectives and the economics and free/open source software in industry. Discusses a broad range of applications from a variety of sectors Provides a unique perspective on work normally performed behind closed doors Highlights the criteria used to compare and assess different approaches to solving problems.

Biobazaar

Author : Janet Hope
Publisher : Harvard University Press
ISBN 13 : 0674033604
Total Pages : 441 pages
Book Rating : 4.6/5 (74 download)

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Book Synopsis Biobazaar by : Janet Hope

Download or read book Biobazaar written by Janet Hope and published by Harvard University Press. This book was released on 2009-06-30 with total page 441 pages. Available in PDF, EPUB and Kindle. Book excerpt: Can the open source approach do for biotechnology what it has done for information technology? Hope's book is the first sustained and systematic inquiry into the application of open source principles to the life sciences. Traversing disciplinary boundaries, she presents a careful analysis of intellectual property-related challenges confronting the biotechnology industry and then paints a detailed picture of "open source biotechnology" as a possible solution.

Open-Source Lab

Author : Joshua M. Pearce
Publisher : Newnes
ISBN 13 : 012410486X
Total Pages : 291 pages
Book Rating : 4.1/5 (241 download)

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Book Synopsis Open-Source Lab by : Joshua M. Pearce

Download or read book Open-Source Lab written by Joshua M. Pearce and published by Newnes. This book was released on 2013-10-04 with total page 291 pages. Available in PDF, EPUB and Kindle. Book excerpt: Open-Source Lab: How to Build Your Own Hardware and Reduce Scientific Research Costs details the development of the free and open-source hardware revolution. The combination of open-source 3D printing and microcontrollers running on free software enables scientists, engineers, and lab personnel in every discipline to develop powerful research tools at unprecedented low costs.After reading Open-Source Lab, you will be able to: Lower equipment costs by making your own hardware Build open-source hardware for scientific research Actively participate in a community in which scientific results are more easily replicated and cited Numerous examples of technologies and the open-source user and developer communities that support them Instructions on how to take advantage of digital design sharing Explanations of Arduinos and RepRaps for scientific use A detailed guide to open-source hardware licenses and basic principles of intellectual property

Handbook of Research on Open Source Software: Technological, Economic, and Social Perspectives

Author : St.Amant, Kirk
Publisher : IGI Global
ISBN 13 : 159140892X
Total Pages : 766 pages
Book Rating : 4.5/5 (914 download)

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Book Synopsis Handbook of Research on Open Source Software: Technological, Economic, and Social Perspectives by : St.Amant, Kirk

Download or read book Handbook of Research on Open Source Software: Technological, Economic, and Social Perspectives written by St.Amant, Kirk and published by IGI Global. This book was released on 2007-04-30 with total page 766 pages. Available in PDF, EPUB and Kindle. Book excerpt: This handbook of research is one of the few texts to combine Open Source Software (OSS) in public and private sector activities into a single reference source. It examines how the use of OSS affects practices in society, business, government, education, and law.

Open Source Software for Statistical Analysis of Big Data: Emerging Research and Opportunities

Author : Segall, Richard S.
Publisher : IGI Global
ISBN 13 : 1799827704
Total Pages : 237 pages
Book Rating : 4.7/5 (998 download)

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Book Synopsis Open Source Software for Statistical Analysis of Big Data: Emerging Research and Opportunities by : Segall, Richard S.

Download or read book Open Source Software for Statistical Analysis of Big Data: Emerging Research and Opportunities written by Segall, Richard S. and published by IGI Global. This book was released on 2020-02-21 with total page 237 pages. Available in PDF, EPUB and Kindle. Book excerpt: With the development of computing technologies in today’s modernized world, software packages have become easily accessible. Open source software, specifically, is a popular method for solving certain issues in the field of computer science. One key challenge is analyzing big data due to the high amounts that organizations are processing. Researchers and professionals need research on the foundations of open source software programs and how they can successfully analyze statistical data. Open Source Software for Statistical Analysis of Big Data: Emerging Research and Opportunities provides emerging research exploring the theoretical and practical aspects of cost-free software possibilities for applications within data analysis and statistics with a specific focus on R and Python. Featuring coverage on a broad range of topics such as cluster analysis, time series forecasting, and machine learning, this book is ideally designed for researchers, developers, practitioners, engineers, academicians, scholars, and students who want to more fully understand in a brief and concise format the realm and technologies of open source software for big data and how it has been used to solve large-scale research problems in a multitude of disciplines.

Data Analysis for the Life Sciences with R

Author : Rafael A. Irizarry
Publisher : CRC Press
ISBN 13 : 1498775861
Total Pages : 461 pages
Book Rating : 4.4/5 (987 download)

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Book Synopsis Data Analysis for the Life Sciences with R by : Rafael A. Irizarry

Download or read book Data Analysis for the Life Sciences with R written by Rafael A. Irizarry and published by CRC Press. This book was released on 2016-10-04 with total page 461 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers several of the statistical concepts and data analytic skills needed to succeed in data-driven life science research. The authors proceed from relatively basic concepts related to computed p-values to advanced topics related to analyzing highthroughput data. They include the R code that performs this analysis and connect the lines of code to the statistical and mathematical concepts explained.

Information Resources in Toxicology, Volume 1: Background, Resources, and Tools

Author : Steve Gilbert
Publisher : Academic Press
ISBN 13 : 0128137258
Total Pages : 1055 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Information Resources in Toxicology, Volume 1: Background, Resources, and Tools by : Steve Gilbert

Download or read book Information Resources in Toxicology, Volume 1: Background, Resources, and Tools written by Steve Gilbert and published by Academic Press. This book was released on 2020-05-16 with total page 1055 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new fifth edition of Information Resources in Toxicology offers a consolidated entry portal for the study, research, and practice of toxicology. Both volumes represents a unique, wide-ranging, curated, international, annotated bibliography, and directory of major resources in toxicology and allied fields such as environmental and occupational health, chemical safety, and risk assessment. The editors and authors are among the leaders of the profession sharing their cumulative wisdom in toxicology’s subdisciplines. This edition keeps pace with the digital world in directing and linking readers to relevant websites and other online tools. Due to the increasing size of the hardcopy publication, the current edition has been divided into two volumes to make it easier to handle and consult. Volume 1: Background, Resources, and Tools, arranged in 5 parts, begins with chapters on the science of toxicology, its history, and informatics framework in Part 1. Part 2 continues with chapters organized by more specific subject such as cancer, clinical toxicology, genetic toxicology, etc. The categorization of chapters by resource format, for example, journals and newsletters, technical reports, organizations constitutes Part 3. Part 4 further considers toxicology’s presence via the Internet, databases, and software tools. Among the miscellaneous topics in the concluding Part 5 are laws and regulations, professional education, grants and funding, and patents. Volume 2: The Global Arena offers contributed chapters focusing on the toxicology contributions of over 40 countries, followed by a glossary of toxicological terms and an appendix of popular quotations related to the field. The book, offered in both print and electronic formats, is carefully structured, indexed, and cross-referenced to enable users to easily find answers to their questions or serendipitously locate useful knowledge they were not originally aware they needed. Among the many timely topics receiving increased emphasis are disaster preparedness, nanotechnology, -omics, risk assessment, societal implications such as ethics and the precautionary principle, climate change, and children’s environmental health. Introductory chapters provide a backdrop to the science of toxicology, its history, the origin and status of toxicoinformatics, and starting points for identifying resources Offers an extensive array of chapters organized by subject, each highlighting resources such as journals, databases,organizations, and review articles Includes chapters with an emphasis on format such as government reports, general interest publications, blogs, and audiovisuals Explores recent internet trends, web-based databases, and software tools in a section on the online environment Concludes with a miscellany of special topics such as laws and regulations, chemical hazard communication resources, careers and professional education, K-12 resources, funding, poison control centers, and patents Paired with Volume Two, which focuses on global resources, this set offers the most comprehensive compendium of print, digital, and organizational resources in the toxicological sciences with over 120 chapters contributions by experts and leaders in the field

Encyclopedia of Bioinformatics and Computational Biology

Author :
Publisher : Elsevier
ISBN 13 : 0128114320
Total Pages : 3421 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Encyclopedia of Bioinformatics and Computational Biology by :

Download or read book Encyclopedia of Bioinformatics and Computational Biology written by and published by Elsevier. This book was released on 2018-08-21 with total page 3421 pages. Available in PDF, EPUB and Kindle. Book excerpt: Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics, Three Volume Set combines elements of computer science, information technology, mathematics, statistics and biotechnology, providing the methodology and in silico solutions to mine biological data and processes. The book covers Theory, Topics and Applications, with a special focus on Integrative –omics and Systems Biology. The theoretical, methodological underpinnings of BCB, including phylogeny are covered, as are more current areas of focus, such as translational bioinformatics, cheminformatics, and environmental informatics. Finally, Applications provide guidance for commonly asked questions. This major reference work spans basic and cutting-edge methodologies authored by leaders in the field, providing an invaluable resource for students, scientists, professionals in research institutes, and a broad swath of researchers in biotechnology and the biomedical and pharmaceutical industries. Brings together information from computer science, information technology, mathematics, statistics and biotechnology Written and reviewed by leading experts in the field, providing a unique and authoritative resource Focuses on the main theoretical and methodological concepts before expanding on specific topics and applications Includes interactive images, multimedia tools and crosslinking to further resources and databases

Safeguarding the Bioeconomy

Author : National Academies of Sciences, Engineering, and Medicine
Publisher : National Academies Press
ISBN 13 : 0309495709
Total Pages : 393 pages
Book Rating : 4.3/5 (94 download)

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Book Synopsis Safeguarding the Bioeconomy by : National Academies of Sciences, Engineering, and Medicine

Download or read book Safeguarding the Bioeconomy written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2020-03-31 with total page 393 pages. Available in PDF, EPUB and Kindle. Book excerpt: Research and innovation in the life sciences is driving rapid growth in agriculture, biomedical science, information science and computing, energy, and other sectors of the U.S. economy. This economic activity, conceptually referred to as the bioeconomy, presents many opportunities to create jobs, improve the quality of life, and continue to drive economic growth. While the United States has been a leader in advancements in the biological sciences, other countries are also actively investing in and expanding their capabilities in this area. Maintaining competitiveness in the bioeconomy is key to maintaining the economic health and security of the United States and other nations. Safeguarding the Bioeconomy evaluates preexisting and potential approaches for assessing the value of the bioeconomy and identifies intangible assets not sufficiently captured or that are missing from U.S. assessments. This study considers strategies for safeguarding and sustaining the economic activity driven by research and innovation in the life sciences. It also presents ideas for horizon scanning mechanisms to identify new technologies, markets, and data sources that have the potential to drive future development of the bioeconomy.

Collaborative Computational Technologies for Biomedical Research

Author : Sean Ekins
Publisher : John Wiley & Sons
ISBN 13 : 1118026020
Total Pages : 462 pages
Book Rating : 4.1/5 (18 download)

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Book Synopsis Collaborative Computational Technologies for Biomedical Research by : Sean Ekins

Download or read book Collaborative Computational Technologies for Biomedical Research written by Sean Ekins and published by John Wiley & Sons. This book was released on 2011-08-04 with total page 462 pages. Available in PDF, EPUB and Kindle. Book excerpt: Methods, Processes, and Tools for Collaboration "The time has come to fundamentally rethink how we handle the building of knowledge in biomedical sciences today. This book describes how the computational sciences have transformed into being a key knowledge broker, able to integrate and operate across divergent data types." Bryn Williams-Jones, Associate Research Fellow, Pfizer The pharmaceutical industry utilizes an extended network of partner organizations in order to discover and develop new drugs, however there is currently little guidance for managing information and resources across collaborations. Featuring contributions from the leading experts in a range of industries, Collaborative Computational Technologies for Biomedical Research provides information that will help organizations make critical decisions about managing partnerships, including: Serving as a user manual for collaborations Tackling real problems from both human collaborative and data and informatics perspectives Providing case histories of biomedical collaborations and technology-specific chapters that balance technological depth with accessibility for the non-specialist reader A must-read for anyone working in the pharmaceuticals industry or academia, this book marks a major step towards widespread collaboration facilitated by computational technologies.

Dictionary of Bioinformatics

Author : K. Manikandakumar
Publisher : MJP Publisher
ISBN 13 :
Total Pages : 220 pages
Book Rating : 4./5 ( download)

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Book Synopsis Dictionary of Bioinformatics by : K. Manikandakumar

Download or read book Dictionary of Bioinformatics written by K. Manikandakumar and published by MJP Publisher. This book was released on 2019-06-07 with total page 220 pages. Available in PDF, EPUB and Kindle. Book excerpt: Includes more than 2000 terms Covers all interdisciplinary terms Systematic flow of information Simple explanations

Entrepreneurship, Innovation, and Platforms

Author : Jeffrey Furman
Publisher : Emerald Group Publishing
ISBN 13 : 1787430804
Total Pages : 405 pages
Book Rating : 4.7/5 (874 download)

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Book Synopsis Entrepreneurship, Innovation, and Platforms by : Jeffrey Furman

Download or read book Entrepreneurship, Innovation, and Platforms written by Jeffrey Furman and published by Emerald Group Publishing. This book was released on 2017-09-29 with total page 405 pages. Available in PDF, EPUB and Kindle. Book excerpt: Despite recent advances in our understanding of how innovation and entrepreneurship impact the creation and appropriation of value, numerous questions remain unanswered. This volume draws together scholars working at the forefront of entrepreneurship-, strategy-, and innovation-related domains to explore these questions.

Deep Learning for the Life Sciences

Author : Bharath Ramsundar
Publisher : O'Reilly Media
ISBN 13 : 1492039802
Total Pages : 236 pages
Book Rating : 4.4/5 (92 download)

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Book Synopsis Deep Learning for the Life Sciences by : Bharath Ramsundar

Download or read book Deep Learning for the Life Sciences written by Bharath Ramsundar and published by O'Reilly Media. This book was released on 2019-04-10 with total page 236 pages. Available in PDF, EPUB and Kindle. Book excerpt: Deep learning has already achieved remarkable results in many fields. Now it’s making waves throughout the sciences broadly and the life sciences in particular. This practical book teaches developers and scientists how to use deep learning for genomics, chemistry, biophysics, microscopy, medical analysis, and other fields. Ideal for practicing developers and scientists ready to apply their skills to scientific applications such as biology, genetics, and drug discovery, this book introduces several deep network primitives. You’ll follow a case study on the problem of designing new therapeutics that ties together physics, chemistry, biology, and medicine—an example that represents one of science’s greatest challenges. Learn the basics of performing machine learning on molecular data Understand why deep learning is a powerful tool for genetics and genomics Apply deep learning to understand biophysical systems Get a brief introduction to machine learning with DeepChem Use deep learning to analyze microscopic images Analyze medical scans using deep learning techniques Learn about variational autoencoders and generative adversarial networks Interpret what your model is doing and how it’s working

Agrobiodiversity and the Law

Author : Juliana Santilli
Publisher : Routledge
ISBN 13 : 1136580026
Total Pages : 347 pages
Book Rating : 4.1/5 (365 download)

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Book Synopsis Agrobiodiversity and the Law by : Juliana Santilli

Download or read book Agrobiodiversity and the Law written by Juliana Santilli and published by Routledge. This book was released on 2012-03-15 with total page 347 pages. Available in PDF, EPUB and Kindle. Book excerpt: A wide range of crop genetic resources is vital for future food security. Loss of agricultural biodiversity increases the risk of relying on a limited number of staple food crops. However, many laws, such as seed laws, plant varieties protection and access and benefit-sharing laws, have direct impacts on agrobiodiversity, and their effects have been severely underestimated by policy-makers. This is of concern not only to lawyers, but also to agronomists, biologists, and social scientists, all of whom need clear guidance as to the relevance of the law to their work. This book analyzes the impact of the legal system on agrobiodiversity (or agricultural biodiversity) – the diversity of agricultural species, varieties, and ecosystems. Using an interdisciplinary approach, it takes up the emerging concept of agrobiodiversity and its relationship with food security, nutrition, health, environmental sustainability, and climate change. It assesses the impacts on agrobiodiversity of key legal instruments, including seeds laws, the International Convention for the Protection of New Varieties of Plants, plant breeders’ rights, the Convention on Biological Diversity (regarding specifically its impact on agrobiodiversity), and the International Treaty on Plant Genetic Resources for Food and Agriculture. It also reviews the options for the implementation of these instruments at the national level in several countries. It discusses the interfaces between the free software movement, the ‘commons’ movement, and seeds, as well as the legal instruments to protect cultural heritage and their application to safeguard agrobiodiversity-rich systems. Finally, it analyzes the role of protected areas and the possibility of using geographical indications to enhance the value of agrobiodiversity products and processes.

Research Anthology on Usage and Development of Open Source Software

Author : Management Association, Information Resources
Publisher : IGI Global
ISBN 13 : 1799891593
Total Pages : 904 pages
Book Rating : 4.7/5 (998 download)

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Book Synopsis Research Anthology on Usage and Development of Open Source Software by : Management Association, Information Resources

Download or read book Research Anthology on Usage and Development of Open Source Software written by Management Association, Information Resources and published by IGI Global. This book was released on 2021-06-25 with total page 904 pages. Available in PDF, EPUB and Kindle. Book excerpt: The quick growth of computer technology and development of software caused it to be in a constant state of change and advancement. This advancement in software development meant that there would be many types of software developed in order to excel in usability and efficiency. Among these different types of software was open source software, one that grants permission for users to use, study, change, and distribute it freely. Due to its availability, open source software has quickly become a valuable asset to the world of computer technology and across various disciplines including education, business, and library science. The Research Anthology on Usage and Development of Open Source Software presents comprehensive research on the design and development of open source software as well as the ways in which it is used. The text discusses in depth the way in which this computer software has been made into a collaborative effort for the advancement of software technology. Discussing topics such as ISO standards, big data, fault prediction, open collaboration, and software development, this anthology is essential for computer engineers, software developers, IT specialists and consultants, instructors, librarians, managers, executives, professionals, academicians, researchers, and students.