Models Of Biological Pattern Formation

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Cellular Automaton Modeling of Biological Pattern Formation

Author : Andreas Deutsch
Publisher : Birkhäuser
ISBN 13 : 1489979808
Total Pages : 464 pages
Book Rating : 4.4/5 (899 download)

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Book Synopsis Cellular Automaton Modeling of Biological Pattern Formation by : Andreas Deutsch

Download or read book Cellular Automaton Modeling of Biological Pattern Formation written by Andreas Deutsch and published by Birkhäuser. This book was released on 2018-03-09 with total page 464 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text explores the use of cellular automata in modeling pattern formation in biological systems. It describes several mathematical modeling approaches utilizing cellular automata that can be used to study the dynamics of interacting cell systems both in simulation and in practice. New in this edition are chapters covering cell migration, tissue development, and cancer dynamics, as well as updated references and new research topic suggestions that reflect the rapid development of the field. The book begins with an introduction to pattern-forming principles in biology and the various mathematical modeling techniques that can be used to analyze them. Cellular automaton models are then discussed in detail for different types of cellular processes and interactions, including random movement, cell migration, adhesive cell interaction, alignment and cellular swarming, growth processes, pigment cell pattern formation, tissue development, tumor growth and invasion, and Turing-type patterns and excitable media. In the final chapter, the authors critically discuss possibilities and limitations of the cellular automaton approach in modeling various biological applications, along with future research directions. Suggestions for research projects are provided throughout the book to encourage additional engagement with the material, and an accompanying simulator is available for readers to perform their own simulations on several of the models covered in the text. QR codes are included within the text for easy access to the simulator. With its accessible presentation and interdisciplinary approach, Cellular Automaton Modeling of Biological Pattern Formation is suitable for graduate and advanced undergraduate students in mathematical biology, biological modeling, and biological computing. It will also be a valuable resource for researchers and practitioners in applied mathematics, mathematical biology, computational physics, bioengineering, and computer science. PRAISE FOR THE FIRST EDITION “An ideal guide for someone with a mathematical or physical background to start exploring biological modelling. Importantly, it will also serve as an excellent guide for experienced modellers to innovate and improve their methodologies for analysing simulation results.” —Mathematical Reviews

Models of Biological Pattern Formation

Author : Hans Meinhardt
Publisher :
ISBN 13 :
Total Pages : 252 pages
Book Rating : 4.:/5 (318 download)

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Book Synopsis Models of Biological Pattern Formation by : Hans Meinhardt

Download or read book Models of Biological Pattern Formation written by Hans Meinhardt and published by . This book was released on 1982 with total page 252 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Mathematical Models for Biological Pattern Formation

Author : Philip K. Maini
Publisher : Springer Science & Business Media
ISBN 13 : 1461301335
Total Pages : 327 pages
Book Rating : 4.4/5 (613 download)

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Book Synopsis Mathematical Models for Biological Pattern Formation by : Philip K. Maini

Download or read book Mathematical Models for Biological Pattern Formation written by Philip K. Maini and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 327 pages. Available in PDF, EPUB and Kindle. Book excerpt: This 121st IMA volume, entitled MATHEMATICAL MODELS FOR BIOLOGICAL PATTERN FORMATION is the first of a new series called FRONTIERS IN APPLICATION OF MATHEMATICS. The FRONTIERS volumes are motivated by IMA pro grams and workshops, but are specially planned and written to provide an entree to and assessment of exciting new areas for the application of mathematical tools and analysis. The emphasis in FRONTIERS volumes is on surveys, exposition and outlook, to attract more mathematicians and other scientists to the study of these areas and to focus efforts on the most important issues, rather than papers on the most recent research results aimed at an audience of specialists. The present volume of peer-reviewed papers grew out of the 1998-99 IMA program on "Mathematics in Biology," in particular the Fall 1998 em phasis on "Theoretical Problems in Developmental Biology and Immunol ogy." During that period there were two workshops on Pattern Formation and Morphogenesis, organized by Professors Murray, Maini and Othmer. James Murray was one of the principal organizers for the entire year pro gram. I am very grateful to James Murray for providing an introduction, and to Philip Maini and Hans Othmer for their excellent work in planning and preparing this first FRONTIERS volume. I also take this opportunity to thank the National Science Foundation, whose financial support of the IMA made the Mathematics in Biology pro gram possible.

Cellular Automaton Modeling of Biological Pattern Formation

Author : Andreas Deutsch
Publisher : Springer Science & Business Media
ISBN 13 : 0817644156
Total Pages : 331 pages
Book Rating : 4.8/5 (176 download)

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Book Synopsis Cellular Automaton Modeling of Biological Pattern Formation by : Andreas Deutsch

Download or read book Cellular Automaton Modeling of Biological Pattern Formation written by Andreas Deutsch and published by Springer Science & Business Media. This book was released on 2007-12-26 with total page 331 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on a challenging application field of cellular automata: pattern formation in biological systems, such as the growth of microorganisms, dynamics of cellular tissue and tumors, and formation of pigment cell patterns. These phenomena, resulting from complex cellular interactions, cannot be deduced solely from experimental analysis, but can be more easily examined using mathematical models, in particular, cellular automaton models. While there are various books treating cellular automaton modeling, this interdisciplinary work is the first one covering biological applications. The book is aimed at researchers, practitioners, and students in applied mathematics, mathematical biology, computational physics, bioengineering, and computer science interested in a cellular automaton approach to biological modeling.

Morphogenesis and Pattern Formation in Biological Systems

Author : T. Sekimura
Publisher : Springer Science & Business Media
ISBN 13 : 4431659587
Total Pages : 391 pages
Book Rating : 4.4/5 (316 download)

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Book Synopsis Morphogenesis and Pattern Formation in Biological Systems by : T. Sekimura

Download or read book Morphogenesis and Pattern Formation in Biological Systems written by T. Sekimura and published by Springer Science & Business Media. This book was released on 2013-11-11 with total page 391 pages. Available in PDF, EPUB and Kindle. Book excerpt: A central goal of biology is to decode the mechanisms that underlie the processes of morphogenesis and pattern formation. Concerned with the analysis of those phenomena, this book integrates experimental and theoretical aspects of biology for the construction and investigation of models of complex processes. It offers an interdisciplinary approach to the pattern formation problems and provides a scope of forthcoming integrated biology including experiments and theories.

Pattern Formation in Morphogenesis

Author : Vincenzo Capasso
Publisher : Springer Science & Business Media
ISBN 13 : 3642201636
Total Pages : 283 pages
Book Rating : 4.6/5 (422 download)

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Book Synopsis Pattern Formation in Morphogenesis by : Vincenzo Capasso

Download or read book Pattern Formation in Morphogenesis written by Vincenzo Capasso and published by Springer Science & Business Media. This book was released on 2012-10-03 with total page 283 pages. Available in PDF, EPUB and Kindle. Book excerpt: Pattern Formation in Morphogenesis is a rich source of interesting and challenging mathematical problems. The volume aims at showing how a combination of new discoveries in developmental biology and associated modelling and computational techniques has stimulated or may stimulate relevant advances in the field. Finally it aims at facilitating the process of unfolding a mutual recognition between Biologists and Mathematicians of their complementary skills, to the point where the resulting synergy generates new and novel discoveries. It offers an interdisciplinary interaction space between biologists from embryology, genetics and molecular biology who present their own work in the perspective of the advancement of their specific fields, and mathematicians who propose solutions based on the knowledge grasped from biologists.

From Pattern Formation to Material Computation

Author : Jeff Jones
Publisher : Springer
ISBN 13 : 3319168231
Total Pages : 370 pages
Book Rating : 4.3/5 (191 download)

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Book Synopsis From Pattern Formation to Material Computation by : Jeff Jones

Download or read book From Pattern Formation to Material Computation written by Jeff Jones and published by Springer. This book was released on 2015-05-15 with total page 370 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book addresses topics of mobile multi-agent systems, pattern formation, biological modelling, artificial life, unconventional computation, and robotics. The behaviour of a simple organism which is capable of remarkable biological and computational feats that seem to transcend its simple component parts is examined and modelled. In this book the following question is asked: How can something as simple as Physarum polycephalum - a giant amoeboid single-celled organism which does not possess any neural tissue, fixed skeleton or organised musculature - can approximate complex computational behaviour during its foraging, growth and adaptation of its amorphous body plan, and with such limited resources? To answer this question the same apparent limitations as faced by the organism are applied: using only simple components with local interactions. A synthesis approach is adopted and a mobile multi-agent system with very simple individual behaviours is employed. It is shown their interactions yield emergent behaviour showing complex self-organised pattern formation with material-like evolution. The presented model reproduces the biological behaviour of Physarum; the formation, growth and minimisation of transport networks. In its conclusion the book moves beyond Physarum and provides results of scoping experiments approximating other complex systems using the multi-agent approach. The results of this book demonstrate the power and range of harnessing emergent phenomena arising in simple multi-agent systems for biological modelling, computation and soft-robotics applications. It methodically describes the necessary components and their interactions, showing how deceptively simple components can create powerful mechanisms, aided by abundant illustrations, supplementary recordings and interactive models. It will be of interest to those in biological sciences, physics, computer science and robotics who wish to understand how simple components can result in complex and useful behaviours and who wish explore the potential of guided pattern formation themselves.

Spatial Dynamics and Pattern Formation in Biological Populations

Author : Ranjit Kumar Upadhyay
Publisher : Chapman & Hall/CRC
ISBN 13 : 9781000334241
Total Pages : 0 pages
Book Rating : 4.3/5 (342 download)

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Book Synopsis Spatial Dynamics and Pattern Formation in Biological Populations by : Ranjit Kumar Upadhyay

Download or read book Spatial Dynamics and Pattern Formation in Biological Populations written by Ranjit Kumar Upadhyay and published by Chapman & Hall/CRC. This book was released on 2021 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book provides an introduction to deterministic (and some stochastic) modeling of spatiotemporal phenomena in ecology, epidemiology, and neural systems. A survey of the classical models in the fields with up to date applications is given. The book begins with detailed description of how spatial dynamics/diffusive processes influence the dynamics of biological populations. These processes play a key role in understanding the outbreak and spread of pandemics which help us in designing the control strategies from the public health perspective. A brief discussion on the functional mechanism of the brain (single neuron models and network level) with classical models of neuronal dynamics in space and time is given. Relevant phenomena and existing modeling approaches in ecology, epidemiology and neuroscience are introduced, which provide examples of pattern formation in these models. The analysis of patterns enables us to study the dynamics of macroscopic and microscopic behaviour of underlying systems and travelling wave type patterns observed in dispersive systems. Moving on to virus dynamics, authors present a detailed analysis of different types models of infectious diseases including two models for influenza, five models for Ebola virus and seven models for Zika virus with diffusion and time delay. A Chapter is devoted for the study of Brain Dynamics (Neural systems in space and time). Significant advances made in modeling the reaction-diffusion systems are presented and spatiotemporal patterning in the systems is reviewed. Development of appropriate mathematical models and detailed analysis (such as linear stability, weakly nonlinear analysis, bifurcation analysis, control theory, numerical simulation) are presented. Key Features Covers the fundamental concepts and mathematical skills required to analyse reaction-diffusion models for biological populations. Concepts are introduced in such a way that readers with a basic knowledge of differential equations and numerical methods can understand the analysis. The results are also illustrated with figures. Focuses on mathematical modeling and numerical simulations using basic conceptual and classic models of population dynamics, Virus and Brain dynamics. Covers wide range of models using spatial and non-spatial approaches. Covers single, two and multispecies reaction-diffusion models from ecology and models from bio-chemistry. Models are analysed for stability of equilibrium points, Turing instability, Hopf bifurcation and pattern formations. Uses Mathematica for problem solving and MATLAB for pattern formations. Contains solved Examples and Problems in Exercises. The Book is suitable for advanced undergraduate, graduate and research students. For those who are working in the above areas, it provides information from most of the recent works. The text presents all the fundamental concepts and mathematical skills needed to build models and perform analyses.

Somites in Developing Embryos

Author : Ruth Bellairs
Publisher : Springer Science & Business Media
ISBN 13 : 1489920137
Total Pages : 318 pages
Book Rating : 4.4/5 (899 download)

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Book Synopsis Somites in Developing Embryos by : Ruth Bellairs

Download or read book Somites in Developing Embryos written by Ruth Bellairs and published by Springer Science & Business Media. This book was released on 2013-11-11 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: Somite development is a unique and important topic; unique because somitic mesoderm is the first tissue to become segmented, important because the somites - once established - exert a profound influence on other seg mental structures which form later. Somite development is of interest at a number of levels. In one aspect, demarcation of a specific number of somites and size regulation, it is a particularly intriguing example of embryonic pattern formation, 'especially in vew of its possible relation to homoeobox-controlled segmentation in insects. At another level, somite development has long been studied by compara tive anatomists, but only recently has new light been thrown on such sub jects as segmentation of the head, proposed in the 18th century by Goethe and now a live issue for developmental biologists. Somit es are simple when they first appear, but very complex structures arise from them. These include the vertebrae and the axial and other muscles and consequently there is a wealth of morphogenetic problems to be explored. Sometimes their morphogenesis is disturbed, by genetic or environ mental factors, and there are many clinical conditions which arise as a result.

Cellular Automaton Modeling of Biological Pattern Formation

Author : A. Deutsch
Publisher :
ISBN 13 : 9783764342814
Total Pages : pages
Book Rating : 4.3/5 (428 download)

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Book Synopsis Cellular Automaton Modeling of Biological Pattern Formation by : A. Deutsch

Download or read book Cellular Automaton Modeling of Biological Pattern Formation written by A. Deutsch and published by . This book was released on 2004 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Dynamical Models in Biology

Author : Miklós Farkas
Publisher : Academic Press
ISBN 13 : 9780080530604
Total Pages : 187 pages
Book Rating : 4.5/5 (36 download)

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Book Synopsis Dynamical Models in Biology by : Miklós Farkas

Download or read book Dynamical Models in Biology written by Miklós Farkas and published by Academic Press. This book was released on 2001-06-15 with total page 187 pages. Available in PDF, EPUB and Kindle. Book excerpt: Dynamic Models in Biology offers an introduction to modern mathematical biology. This book provides a short introduction to modern mathematical methods in modeling dynamical phenomena and treats the broad topics of population dynamics, epidemiology, evolution, immunology, morphogenesis, and pattern formation. Primarily employing differential equations, the author presents accessible descriptions of difficult mathematical models. Recent mathematical results are included, but the author's presentation gives intuitive meaning to all the main formulae. Besides mathematicians who want to get acquainted with this relatively new field of applications, this book is useful for physicians, biologists, agricultural engineers, and environmentalists. Key Topics Include: Chaotic dynamics of populations The spread of sexually transmitted diseases Problems of the origin of life Models of immunology Formation of animal hide patterns The intuitive meaning of mathematical formulae explained with many figures Applying new mathematical results in modeling biological phenomena Miklos Farkas is a professor at Budapest University of Technology where he has researched and instructed mathematics for over thirty years. He has taught at universities in the former Soviet Union, Canada, Australia, Venezuela, Nigeria, India, and Columbia. Prof. Farkas received the 1999 Bolyai Award of the Hungarian Academy of Science and the 2001 Albert Szentgyorgyi Award of the Hungarian Ministry of Education. A 'down-to-earth' introduction to the growing field of modern mathematical biology Also includes appendices which provide background material that goes beyond advanced calculus and linear algebra

Pattern Formation In The Physical And Biological Sciences

Author : H. Frederick Nijhout
Publisher : CRC Press
ISBN 13 : 0429972997
Total Pages : 318 pages
Book Rating : 4.4/5 (299 download)

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Book Synopsis Pattern Formation In The Physical And Biological Sciences by : H. Frederick Nijhout

Download or read book Pattern Formation In The Physical And Biological Sciences written by H. Frederick Nijhout and published by CRC Press. This book was released on 2018-02-19 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Lecture Notes Volume represents the first time any of the summer school lectures have been collected and published on a discrete subject rather than grouping all of a season's lectures together. This volume provides a broad survey of current thought on the problem of pattern formation. Spanning six years of summer school lectures, it includes articles which examine the origin and evolution of spatial patterns in physio-chemical and biological systems from a great diversity of theoretical and mechanistic perspectives. In addition, most of these pieces have been updated by their authors and three articles never previously published have been added.

Morphogenesis

Author : Paul Bourgine
Publisher : Springer Science & Business Media
ISBN 13 : 3642131743
Total Pages : 346 pages
Book Rating : 4.6/5 (421 download)

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Book Synopsis Morphogenesis by : Paul Bourgine

Download or read book Morphogenesis written by Paul Bourgine and published by Springer Science & Business Media. This book was released on 2010-10-28 with total page 346 pages. Available in PDF, EPUB and Kindle. Book excerpt: What are the relations between the shape of a system of cities and that of fish school? Which events should happen in a cell in order that it participates to one of the finger of our hands? How to interpret the shape of a sand dune? This collective book written for the non-specialist addresses these questions and more generally, the fundamental issue of the emergence of forms and patterns in physical and living systems. It is a single book gathering the different aspects of morphogenesis and approaches developed in different disciplines on shape and pattern formation. Relying on the seminal works of D’Arcy Thompson, Alan Turing and René Thom, it confronts major examples like plant growth and shape, intra-cellular organization, evolution of living forms or motifs generated by crystals. A book essential to understand universal principles at work in the shapes and patterns surrounding us but also to avoid spurious analogies.

Neural Fields

Author : Stephen Coombes
Publisher : Springer
ISBN 13 : 3642545939
Total Pages : 488 pages
Book Rating : 4.6/5 (425 download)

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Book Synopsis Neural Fields by : Stephen Coombes

Download or read book Neural Fields written by Stephen Coombes and published by Springer. This book was released on 2014-06-17 with total page 488 pages. Available in PDF, EPUB and Kindle. Book excerpt: Neural field theory has a long-standing tradition in the mathematical and computational neurosciences. Beginning almost 50 years ago with seminal work by Griffiths and culminating in the 1970ties with the models of Wilson and Cowan, Nunez and Amari, this important research area experienced a renaissance during the 1990ties by the groups of Ermentrout, Robinson, Bressloff, Wright and Haken. Since then, much progress has been made in both, the development of mathematical and numerical techniques and in physiological refinement und understanding. In contrast to large-scale neural network models described by huge connectivity matrices that are computationally expensive in numerical simulations, neural field models described by connectivity kernels allow for analytical treatment by means of methods from functional analysis. Thus, a number of rigorous results on the existence of bump and wave solutions or on inverse kernel construction problems are nowadays available. Moreover, neural fields provide an important interface for the coupling of neural activity to experimentally observable data, such as the electroencephalogram (EEG) or functional magnetic resonance imaging (fMRI). And finally, neural fields over rather abstract feature spaces, also called dynamic fields, found successful applications in the cognitive sciences and in robotics. Up to now, research results in neural field theory have been disseminated across a number of distinct journals from mathematics, computational neuroscience, biophysics, cognitive science and others. There is no comprehensive collection of results or reviews available yet. With our proposed book Neural Field Theory, we aim at filling this gap in the market. We received consent from some of the leading scientists in the field, who are willing to write contributions for the book, among them are two of the founding-fathers of neural field theory: Shun-ichi Amari and Jack Cowan.

The Once and Future Turing

Author : S. Barry Cooper
Publisher : Cambridge University Press
ISBN 13 : 131658917X
Total Pages : pages
Book Rating : 4.3/5 (165 download)

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Book Synopsis The Once and Future Turing by : S. Barry Cooper

Download or read book The Once and Future Turing written by S. Barry Cooper and published by Cambridge University Press. This book was released on 2016-03-24 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Alan Turing (1912–1954) made seminal contributions to mathematical logic, computation, computer science, artificial intelligence, cryptography and theoretical biology. In this volume, outstanding scientific thinkers take a fresh look at the great range of Turing's contributions, on how the subjects have developed since his time, and how they might develop still further. The contributors include Martin Davis, J. M. E. Hyland, Andrew R. Booker, Ueli Maurer, Kanti V. Mardia, S. Barry Cooper, Stephen Wolfram, Christof Teuscher, Douglas Richard Hofstadter, Philip K. Maini, Thomas E. Woolley, Eamonn A. Gaffney, Ruth E. Baker, Richard Gordon, Stuart Kauffman, Scott Aaronson, Solomon Feferman, P. D. Welch and Roger Penrose. These specially commissioned essays will provoke and engross the reader who wishes to understand better the lasting significance of one of the twentieth century's deepest thinkers.

Towards a Mathematical Theory of Complex Biological Systems

Author : Carlo Bianca
Publisher : World Scientific
ISBN 13 : 9814340537
Total Pages : 227 pages
Book Rating : 4.8/5 (143 download)

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Book Synopsis Towards a Mathematical Theory of Complex Biological Systems by : Carlo Bianca

Download or read book Towards a Mathematical Theory of Complex Biological Systems written by Carlo Bianca and published by World Scientific. This book was released on 2011 with total page 227 pages. Available in PDF, EPUB and Kindle. Book excerpt: This monograph has the ambitious aim of developing a mathematical theory of complex biological systems with special attention to the phenomena of ageing, degeneration and repair of biological tissues under individual self-repair actions that may have good potential in medical therapy. The approach to mathematically modeling biological systems needs to tackle the additional difficulties generated by the peculiarities of living matter. These include the lack of invariance principles, abilities to express strategies for individual fitness, heterogeneous behaviors, competition up to proliferative and/or destructive actions, mutations, learning ability, evolution and many others. Applied mathematicians in the field of living systems, especially biological systems, will appreciate the special class of integro-differential equations offered here for modeling at the molecular, celular and tissue scales. A unique perspective is also presented with a number of case studies in biological modeling.

On Growth and Form

Author : M. A. J. Chaplain
Publisher : John Wiley & Sons
ISBN 13 :
Total Pages : 448 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis On Growth and Form by : M. A. J. Chaplain

Download or read book On Growth and Form written by M. A. J. Chaplain and published by John Wiley & Sons. This book was released on 1999 with total page 448 pages. Available in PDF, EPUB and Kindle. Book excerpt: On Growth and Form Spatio-temporal Pattern Formation in Biology M. A. J. Chaplain and G. D. Singh, both of the University of Dundee, UK J. C. McLachlan, St. Andrews University, UK Spatio-temporal pattern formation is a major area of research within the subject of mathematical biology. The topic involves the use of mathematical modelling to analyse how patterns in biology are created and develop. For example, the growth, over time, of the intricate and beautiful patterns on certain sea-shells or the striped markings on a tiger can be modelled and their development predicted in terms of non-linear mathematical processes. The current volume captures the breadth of recent research into various aspects of spatio-temporal pattern and form, such as development biology, reaction-diffusion systems and morphometrics. * Brings the ideas of the classic On Growth and Form by D'Arcy Thompson, the founding classic of mathematical biology, fully up to date and looks to future developments in the subject * Foreword provided by Professor John Tyler Bonner, Princeton University * World class collection of internationally renowned contributors from both experimental and theoretical backgrounds Taking its inspiration from D'Arcy Thompson's classic and still influential volume On Growth and Form, this new volume presents a collection of 21 articles from the Plenary Speakers of the recent D'Arcy Thompson Conference, held at the University of Dundee, 20-24 September 1998. The topics covered include pattern formation in development biology, reaction-diffusion systems, intercellular systems and morphometrics, offering the reader a stimulating blend of theory and experiment. This book will be of particular interest to bio-mathematicians and development biologists. Paediatric clinicians, evolutionary biologists, orthodontists, anatomists, physiologists and many other members of the biology community will also benefit greatly from it.