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Cellular Automaton Modeling Of Biological Pattern Formation
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Book Synopsis Cellular Automaton Modeling of Biological Pattern Formation by : Andreas Deutsch
Download or read book Cellular Automaton Modeling of Biological Pattern Formation written by Andreas Deutsch and published by Springer Science & Business Media. This book was released on 2007-12-26 with total page 331 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on a challenging application field of cellular automata: pattern formation in biological systems, such as the growth of microorganisms, dynamics of cellular tissue and tumors, and formation of pigment cell patterns. These phenomena, resulting from complex cellular interactions, cannot be deduced solely from experimental analysis, but can be more easily examined using mathematical models, in particular, cellular automaton models. While there are various books treating cellular automaton modeling, this interdisciplinary work is the first one covering biological applications. The book is aimed at researchers, practitioners, and students in applied mathematics, mathematical biology, computational physics, bioengineering, and computer science interested in a cellular automaton approach to biological modeling.
Book Synopsis Cellular Automaton Modeling of Biological Pattern Formation by : Andreas Deutsch
Download or read book Cellular Automaton Modeling of Biological Pattern Formation written by Andreas Deutsch and published by Birkhäuser. This book was released on 2018-03-09 with total page 464 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text explores the use of cellular automata in modeling pattern formation in biological systems. It describes several mathematical modeling approaches utilizing cellular automata that can be used to study the dynamics of interacting cell systems both in simulation and in practice. New in this edition are chapters covering cell migration, tissue development, and cancer dynamics, as well as updated references and new research topic suggestions that reflect the rapid development of the field. The book begins with an introduction to pattern-forming principles in biology and the various mathematical modeling techniques that can be used to analyze them. Cellular automaton models are then discussed in detail for different types of cellular processes and interactions, including random movement, cell migration, adhesive cell interaction, alignment and cellular swarming, growth processes, pigment cell pattern formation, tissue development, tumor growth and invasion, and Turing-type patterns and excitable media. In the final chapter, the authors critically discuss possibilities and limitations of the cellular automaton approach in modeling various biological applications, along with future research directions. Suggestions for research projects are provided throughout the book to encourage additional engagement with the material, and an accompanying simulator is available for readers to perform their own simulations on several of the models covered in the text. QR codes are included within the text for easy access to the simulator. With its accessible presentation and interdisciplinary approach, Cellular Automaton Modeling of Biological Pattern Formation is suitable for graduate and advanced undergraduate students in mathematical biology, biological modeling, and biological computing. It will also be a valuable resource for researchers and practitioners in applied mathematics, mathematical biology, computational physics, bioengineering, and computer science. PRAISE FOR THE FIRST EDITION “An ideal guide for someone with a mathematical or physical background to start exploring biological modelling. Importantly, it will also serve as an excellent guide for experienced modellers to innovate and improve their methodologies for analysing simulation results.” —Mathematical Reviews
Book Synopsis Cellular Automaton Modeling of Biological Pattern Formation by : A. Deutsch
Download or read book Cellular Automaton Modeling of Biological Pattern Formation written by A. Deutsch and published by . This book was released on 2004 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Mathematical Models for Biological Pattern Formation by : Philip K. Maini
Download or read book Mathematical Models for Biological Pattern Formation written by Philip K. Maini and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 327 pages. Available in PDF, EPUB and Kindle. Book excerpt: This 121st IMA volume, entitled MATHEMATICAL MODELS FOR BIOLOGICAL PATTERN FORMATION is the first of a new series called FRONTIERS IN APPLICATION OF MATHEMATICS. The FRONTIERS volumes are motivated by IMA pro grams and workshops, but are specially planned and written to provide an entree to and assessment of exciting new areas for the application of mathematical tools and analysis. The emphasis in FRONTIERS volumes is on surveys, exposition and outlook, to attract more mathematicians and other scientists to the study of these areas and to focus efforts on the most important issues, rather than papers on the most recent research results aimed at an audience of specialists. The present volume of peer-reviewed papers grew out of the 1998-99 IMA program on "Mathematics in Biology," in particular the Fall 1998 em phasis on "Theoretical Problems in Developmental Biology and Immunol ogy." During that period there were two workshops on Pattern Formation and Morphogenesis, organized by Professors Murray, Maini and Othmer. James Murray was one of the principal organizers for the entire year pro gram. I am very grateful to James Murray for providing an introduction, and to Philip Maini and Hans Othmer for their excellent work in planning and preparing this first FRONTIERS volume. I also take this opportunity to thank the National Science Foundation, whose financial support of the IMA made the Mathematics in Biology pro gram possible.
Book Synopsis Cellular Automata: Analysis and Applications by : Karl-Peter Hadeler
Download or read book Cellular Automata: Analysis and Applications written by Karl-Peter Hadeler and published by Springer. This book was released on 2017-05-27 with total page 467 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an overview of the main approaches used to analyze the dynamics of cellular automata. Cellular automata are an indispensable tool in mathematical modeling. In contrast to classical modeling approaches like partial differential equations, cellular automata are relatively easy to simulate but difficult to analyze. In this book we present a review of approaches and theories that allow the reader to understand the behavior of cellular automata beyond simulations. The first part consists of an introduction to cellular automata on Cayley graphs, and their characterization via the fundamental Cutis-Hedlund-Lyndon theorems in the context of various topological concepts (Cantor, Besicovitch and Weyl topology). The second part focuses on classification results: What classification follows from topological concepts (Hurley classification), Lyapunov stability (Gilman classification), and the theory of formal languages and grammars (Kůrka classification)? These classifications suggest that cellular automata be clustered, similar to the classification of partial differential equations into hyperbolic, parabolic and elliptic equations. This part of the book culminates in the question of whether the properties of cellular automata are decidable. Surjectivity and injectivity are examined, and the seminal Garden of Eden theorems are discussed. In turn, the third part focuses on the analysis of cellular automata that inherit distinct properties, often based on mathematical modeling of biological, physical or chemical systems. Linearity is a concept that allows us to define self-similar limit sets. Models for particle motion show how to bridge the gap between cellular automata and partial differential equations (HPP model and ultradiscrete limit). Pattern formation is related to linear cellular automata, to the Bar-Yam model for the Turing pattern, and Greenberg-Hastings automata for excitable media. In addition, models for sand piles, the dynamics of infectious d
Book Synopsis Pattern Formation In The Physical And Biological Sciences by : H. Frederick Nijhout
Download or read book Pattern Formation In The Physical And Biological Sciences written by H. Frederick Nijhout and published by CRC Press. This book was released on 2018-02-19 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Lecture Notes Volume represents the first time any of the summer school lectures have been collected and published on a discrete subject rather than grouping all of a season's lectures together. This volume provides a broad survey of current thought on the problem of pattern formation. Spanning six years of summer school lectures, it includes articles which examine the origin and evolution of spatial patterns in physio-chemical and biological systems from a great diversity of theoretical and mechanistic perspectives. In addition, most of these pieces have been updated by their authors and three articles never previously published have been added.
Book Synopsis Designing Beauty: The Art of Cellular Automata by : Andrew Adamatzky
Download or read book Designing Beauty: The Art of Cellular Automata written by Andrew Adamatzky and published by Springer. This book was released on 2016-01-05 with total page 191 pages. Available in PDF, EPUB and Kindle. Book excerpt: This fascinating, colourful book offers in-depth insights and first-hand working experiences in the production of art works, using simple computational models with rich morphological behaviour, at the edge of mathematics, computer science, physics and biology. It organically combines ground breaking scientific discoveries in the theory of computation and complex systems with artistic representations of the research results. In this appealing book mathematicians, computer scientists, physicists, and engineers brought together marvelous and esoteric patterns generated by cellular automata, which are arrays of simple machines with complex behavior. Configurations produced by cellular automata uncover mechanics of dynamic patterns formation, their propagation and interaction in natural systems: heart pacemaker, bacterial membrane proteins, chemical rectors, water permeation in soil, compressed gas, cell division, population dynamics, reaction-diffusion media and self-organisation. The book inspires artists to take on cellular automata as a tool of creativity and it persuades scientists to convert their research results into the works of art. The book is lavishly illustrated with visually attractive examples, presented in a lively and easily accessible manner.
Book Synopsis Pattern Formation in Cellular Automaton Models by : Sabine Dormann
Download or read book Pattern Formation in Cellular Automaton Models written by Sabine Dormann and published by . This book was released on 2000 with total page 174 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Cellular Automata by : Giancarlo Mauri
Download or read book Cellular Automata written by Giancarlo Mauri and published by Springer. This book was released on 2018-09-03 with total page 528 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the 13th International Conference on Cellular Automata for Research and Industry, ACRI 2018, held in Como, Italy, in September 2018. The 47 full papers presented in this volume were carefully reviewed and selected from 64 submissions. This volume contains invited contributions and accepted papers from the main track and from the three organized workshops. The volume is organized in the following topics: biological systems modeling; simulation and other applications of CA; multi-agent systems; pedestrian and traffic dynamics; synchronization and control; theory and cryptography; asynchronous cellular automata; and crowds, traffic and cellular automata.
Book Synopsis Cellular Automata And Complexity by : Stephen Wolfram
Download or read book Cellular Automata And Complexity written by Stephen Wolfram and published by CRC Press. This book was released on 2018-03-08 with total page 528 pages. Available in PDF, EPUB and Kindle. Book excerpt: Are mathematical equations the best way to model nature? For many years it had been assumed that they were. But in the early 1980s, Stephen Wolfram made the radical proposal that one should instead build models that are based directly on simple computer programs. Wolfram made a detailed study of a class of such models known as cellular automata, and discovered a remarkable fact: that even when the underlying rules are very simple, the behaviour they produce can be highly complex, and can mimic many features of what we see in nature. And based on this result, Wolfram began a program of research to develop what he called A Science of Complexity."The results of Wolfram's work found many applications, from the so-called Wolfram Classification central to fields such as artificial life, to new ideas about cryptography and fluid dynamics. This book is a collection of Wolfram's original papers on cellular automata and complexity. Some of these papers are widely known in the scientific community others have never been published before. Together, the papers provide a highly readable account of what has become a major new field of science, with important implications for physics, biology, economics, computer science and many other areas.
Book Synopsis Cellular Automata Machines by : Tommaso Toffoli
Download or read book Cellular Automata Machines written by Tommaso Toffoli and published by MIT Press. This book was released on 1987 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt: Theory of Computation -- Computation by Abstracts Devices.
Book Synopsis Cellular Automata and Complex Systems: Methods for Modeling Biological Phenomena by : Bilotta, Eleonora
Download or read book Cellular Automata and Complex Systems: Methods for Modeling Biological Phenomena written by Bilotta, Eleonora and published by IGI Global. This book was released on 2010-06-30 with total page 502 pages. Available in PDF, EPUB and Kindle. Book excerpt: "The theme of this book is the use of Cellular Automatas (CAs) to model biological systems, describing 2-D CAs to create populations of "life-like agents" with their own genomes"--Provided by publisher.
Book Synopsis Cellular Automata Modeling of Physical Systems by : Bastien Chopard
Download or read book Cellular Automata Modeling of Physical Systems written by Bastien Chopard and published by Cambridge University Press. This book was released on 2005-06-30 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a self-contained introduction to cellular automata and lattice Boltzmann techniques. Beginning with a chapter introducing the basic concepts of this developing field, a second chapter describes methods used in cellular automata modeling. Following chapters discuss the statistical mechanics of lattice gases, diffusion phenomena, reaction-diffusion processes and non-equilibrium phase transitions. A final chapter looks at other models and applications, such as wave propagation and multiparticle fluids. With a pedagogic approach, the volume focuses on the use of cellular automata in the framework of equilibrium and non-equilibrium statistical physics. It also emphasises application-oriented problems such as fluid dynamics and pattern formation. The book contains many examples and problems. A glossary and a detailed bibliography are also included. This will be a valuable book for graduate students and researchers working in statistical physics, solid state physics, chemical physics and computer science.
Book Synopsis Introductory Biophysics by : James R. Claycomb
Download or read book Introductory Biophysics written by James R. Claycomb and published by Jones & Bartlett Learning. This book was released on 2011 with total page 375 pages. Available in PDF, EPUB and Kindle. Book excerpt: Designed for biology, physics, and medical students, Introductory Biophysics: Perspectives on the Living State, provides a comprehensive overview of the complex subject of biological physics. The companion CD-ROM, with MATLAB examples and the student version of QuickFieldTM, allows the student to perform biophysical simulations and modify the textbook example files. Included in the text are computer simulations of thermodynamics, astrobiology, the response of living cells to external fields, chaos in population dynamics, numerical models of evolution, electrical circuit models of cell suspension, gap junctions, and neuronal action potentials. With this text students will be able to perform biophysical simulations within hours. MATLAB examples include; the Hodgkin Huxley equations; the FitzHugh-Nagumo model of action potentials; fractal structures in biology; chaos in population dynamics; the cellular automaton model (the game of life); pattern formation in reaction-diffusion systems. QuickFieldTM tutorials and examples include; calculation of currents in biological tissue; cells under electrical stimulation; induced membrane potentials; heat transfer and analysis of stress in biomaterials.
Book Synopsis Simulating Complex Systems by Cellular Automata by : Alfons G. Hoekstra
Download or read book Simulating Complex Systems by Cellular Automata written by Alfons G. Hoekstra and published by Springer Science & Business Media. This book was released on 2010-06-13 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: Deeply rooted in fundamental research in Mathematics and Computer Science, Cellular Automata (CA) are recognized as an intuitive modeling paradigm for Complex Systems. Already very basic CA, with extremely simple micro dynamics such as the Game of Life, show an almost endless display of complex emergent behavior. Conversely, CA can also be designed to produce a desired emergent behavior, using either theoretical methodologies or evolutionary techniques. Meanwhile, beyond the original realm of applications - Physics, Computer Science, and Mathematics – CA have also become work horses in very different disciplines such as epidemiology, immunology, sociology, and finance. In this context of fast and impressive progress, spurred further by the enormous attraction these topics have on students, this book emerges as a welcome overview of the field for its practitioners, as well as a good starting point for detailed study on the graduate and post-graduate level. The book contains three parts, two major parts on theory and applications, and a smaller part on software. The theory part contains fundamental chapters on how to design and/or apply CA for many different areas. In the applications part a number of representative examples of really using CA in a broad range of disciplines is provided - this part will give the reader a good idea of the real strength of this kind of modeling as well as the incentive to apply CA in their own field of study. Finally, we included a smaller section on software, to highlight the important work that has been done to create high quality problem solving environments that allow to quickly and relatively easily implement a CA model and run simulations, both on the desktop and if needed, on High Performance Computing infrastructures.
Book Synopsis Theory of Self-reproducing Automata by : John Von Neumann
Download or read book Theory of Self-reproducing Automata written by John Von Neumann and published by Urbana : University of Illinois Press. This book was released on 1966 with total page 416 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Bio-Inspired Artificial Intelligence by : Dario Floreano
Download or read book Bio-Inspired Artificial Intelligence written by Dario Floreano and published by MIT Press. This book was released on 2023-04-04 with total page 674 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive introduction to new approaches in artificial intelligence and robotics that are inspired by self-organizing biological processes and structures. New approaches to artificial intelligence spring from the idea that intelligence emerges as much from cells, bodies, and societies as it does from evolution, development, and learning. Traditionally, artificial intelligence has been concerned with reproducing the abilities of human brains; newer approaches take inspiration from a wider range of biological structures that that are capable of autonomous self-organization. Examples of these new approaches include evolutionary computation and evolutionary electronics, artificial neural networks, immune systems, biorobotics, and swarm intelligence—to mention only a few. This book offers a comprehensive introduction to the emerging field of biologically inspired artificial intelligence that can be used as an upper-level text or as a reference for researchers. Each chapter presents computational approaches inspired by a different biological system; each begins with background information about the biological system and then proceeds to develop computational models that make use of biological concepts. The chapters cover evolutionary computation and electronics; cellular systems; neural systems, including neuromorphic engineering; developmental systems; immune systems; behavioral systems—including several approaches to robotics, including behavior-based, bio-mimetic, epigenetic, and evolutionary robots; and collective systems, including swarm robotics as well as cooperative and competitive co-evolving systems. Chapters end with a concluding overview and suggested reading.
