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Download or read book High-performance Computational Biology written by and published by . This book was released on 2008 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Computational Biology and High Performance Computing written by and published by . This book was released on 1999 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : Bertil Schmidt
Publisher : CRC Press
ISBN 13 : 1439858365
Total Pages : 425 pages
Book Rating : 4.4/5 (398 download)
Download or read book Bioinformatics written by Bertil Schmidt and published by CRC Press. This book was released on 2010-07-15 with total page 425 pages. Available in PDF, EPUB and Kindle. Book excerpt: New sequencing technologies have broken many experimental barriers to genome scale sequencing, leading to the extraction of huge quantities of sequence data. This expansion of biological databases established the need for new ways to harness and apply the astounding amount of available genomic information and convert it into substantive biological
Author : Fahad Saeed
Publisher :
ISBN 13 :
Total Pages : 310 pages
Book Rating : 4.:/5 (714 download)
Download or read book High Performance Computational Biology Algorithms written by Fahad Saeed and published by . This book was released on 2010 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : Dariusz Mrozek
Publisher : Springer
ISBN 13 : 3319069713
Total Pages : 120 pages
Book Rating : 4.3/5 (19 download)
Download or read book High-Performance Computational Solutions in Protein Bioinformatics written by Dariusz Mrozek and published by Springer. This book was released on 2014-06-04 with total page 120 pages. Available in PDF, EPUB and Kindle. Book excerpt: Recent developments in computer science enable algorithms previously perceived as too time-consuming to now be efficiently used for applications in bioinformatics and life sciences. This work focuses on proteins and their structures, protein structure similarity searching at main representation levels and various techniques that can be used to accelerate similarity searches. Divided into four parts, the first part provides a formal model of 3D protein structures for functional genomics, comparative bioinformatics and molecular modeling. The second part focuses on the use of multithreading for efficient approximate searching on protein secondary structures. The third and fourth parts concentrate on finding 3D protein structure similarities with the support of GPUs and cloud computing. Parts three and four both describe the acceleration of different methods. The text will be of interest to researchers and software developers working in the field of structural bioinformatics and biomedical databases.
Author : Werner Dubitzky
Publisher : Springer Science & Business Media
ISBN 13 : 3540698418
Total Pages : 202 pages
Book Rating : 4.5/5 (46 download)
Download or read book Distributed, High-Performance and Grid Computing in Computational Biology written by Werner Dubitzky and published by Springer Science & Business Media. This book was released on 2007-01-03 with total page 202 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book constitutes the refereed proceedings of the International Workshop on Distributed, High-Performance and Grid Computing in Computational Biology, GCCB 2006, held in Eilat, Israel in January 2007 in conjunction with the 5th European Conference on Computational Biology, ECCB 2006. The 13 revised full papers presented were carefully reviewed and selected from many high quality submissions.
Author : Ross McFarlane
Publisher :
ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (768 download)
Download or read book High-performance Computing for Computational Biology of the Heart written by Ross McFarlane and published by . This book was released on 2010 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: This thesis describes the development of Beatbox - a simulation environment for computational biology of the heart. Beatbox aims to provide an adaptable, approachable simulation tool and an extensible framework with which High Performance Computing may be harnessed by researchers. Beatbox is built upon the QUI software package, which is studied in Chapter 2. The chapter discusses QUI's functionality and common patterns of use, and describes its underlying software architecture, in particular its extensibility through the addition of new software modules called 'devices'. The chapter summarises good practice for device developers in the Laws of Devices. Chapter 3 discusses the parallel architecture of Beatbox and its implementation for distributed memory clusters. The chapter discusses strategies for domain decomposition, halo swapping and introduces an efficient method for exchange of data with diagonal neighbours called Magic Corners. The development of Beatbox's parallel Input/Output facilities is detailed, and its impact on scaling performance discussed. The chapter discusses the way in which parallelism can be hidden from the user, even while permitting the runtime execution user-defined functions. The chapter goes on to show how QUI's extensibility can be continued in a parallel environment by providing implicit parallelism for devices and defining Laws of Parallel Devices to guide third-party developers. Beatbox's parallel performance is evaluated and discussed. Chapter 4 describes the extension of Beatbox to simulate anatomically realistic tissue geometry. Representation of irregular geometries is described, along with associated user controls. A technique to compute no-flux boundary conditions on irregular boundaries is introduced. The Laws of Devices are further developed to include irregular geometries. Finally, parallel performance of anatomically realistic meshes is evaluated.
Author : Vipin Sachdeva
Publisher :
ISBN 13 :
Total Pages : 424 pages
Book Rating : 4.:/5 (677 download)
Download or read book High Performance Computing for Computational Biology and Graph Theory written by Vipin Sachdeva and published by . This book was released on 2005 with total page 424 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : Zhihua Du
Publisher :
ISBN 13 :
Total Pages : 163 pages
Book Rating : 4.:/5 (173 download)
Download or read book High Performance Computing for Computational Biology written by Zhihua Du and published by . This book was released on 2005 with total page 163 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : Albert Y. Zomaya
Publisher : John Wiley & Sons
ISBN 13 : 0471756490
Total Pages : 814 pages
Book Rating : 4.4/5 (717 download)
Download or read book Parallel Computing for Bioinformatics and Computational Biology written by Albert Y. Zomaya and published by John Wiley & Sons. This book was released on 2006-04-14 with total page 814 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discover how to streamline complex bioinformatics applications with parallel computing This publication enables readers to handle more complex bioinformatics applications and larger and richer data sets. As the editor clearly shows, using powerful parallel computing tools can lead to significant breakthroughs in deciphering genomes, understanding genetic disease, designing customized drug therapies, and understanding evolution. A broad range of bioinformatics applications is covered with demonstrations on how each one can be parallelized to improve performance and gain faster rates of computation. Current parallel computing techniques and technologies are examined, including distributed computing and grid computing. Readers are provided with a mixture of algorithms, experiments, and simulations that provide not only qualitative but also quantitative insights into the dynamic field of bioinformatics. Parallel Computing for Bioinformatics and Computational Biology is a contributed work that serves as a repository of case studies, collectively demonstrating how parallel computing streamlines difficult problems in bioinformatics and produces better results. Each of the chapters is authored by an established expert in the field and carefully edited to ensure a consistent approach and high standard throughout the publication. The work is organized into five parts: * Algorithms and models * Sequence analysis and microarrays * Phylogenetics * Protein folding * Platforms and enabling technologies Researchers, educators, and students in the field of bioinformatics will discover how high-performance computing can enable them to handle more complex data sets, gain deeper insights, and make new discoveries.
Author : Srinivas Aluru
Publisher :
ISBN 13 :
Total Pages : 103 pages
Book Rating : 4.:/5 (437 download)
Download or read book Special Issue on High-performance Computational Biology written by Srinivas Aluru and published by . This book was released on 2003 with total page 103 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : IEEE Computer Society. Technical Committee on Parallel Processing
Publisher :
ISBN 13 : 9780769515748
Total Pages : pages
Book Rating : 4.5/5 (157 download)
Download or read book First International Workshop on High Performance Computational Biology written by IEEE Computer Society. Technical Committee on Parallel Processing and published by . This book was released on 2002 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Author : William T. Loging
Publisher : Cambridge University Press
ISBN 13 : 1316538818
Total Pages : 255 pages
Book Rating : 4.3/5 (165 download)
Download or read book Bioinformatics and Computational Biology in Drug Discovery and Development written by William T. Loging and published by Cambridge University Press. This book was released on 2016-03-17 with total page 255 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational biology drives discovery through its use of high-throughput informatics approaches. This book provides a road map of the current drug development process and how computational biology approaches play a critical role across the entire drug discovery pipeline. Through the use of previously unpublished, real-life case studies the impact of a range of computational approaches are discussed at various phases of the pipeline. Additionally, a focus section provides innovative visualisation approaches, from both the drug discovery process as well as from other fields that utilise large datasets, recognising the increasing use of such technology. Serving the needs of early career and more experienced scientists, this up-to-date reference provides an essential introduction to the process and background of drug discovery, highlighting how computational researchers can contribute to that pipeline.
Author : Pawan Raghav
Publisher : Elsevier
ISBN 13 : 0443132216
Total Pages : 568 pages
Book Rating : 4.4/5 (431 download)
Download or read book Computational Biology for Stem Cell Research written by Pawan Raghav and published by Elsevier. This book was released on 2024-01-12 with total page 568 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational Biology for Stem Cell Research is an invaluable guide for researchers as they explore HSCs and MSCs in computational biology. With the growing advancement of technology in the field of biomedical sciences, computational approaches have reduced the financial and experimental burden of the experimental process. In the shortest span, it has established itself as an integral component of any biological research activity. HSC informatics (in silico) techniques such as machine learning, genome network analysis, data mining, complex genome structures, docking, system biology, mathematical modeling, programming (R, Python, Perl, etc.) help to analyze, visualize, network constructions, and protein-ligand or protein-protein interactions. This book is aimed at beginners with an exact correlation between the biomedical sciences and in silico computational methods for HSCs transplantation and translational research and provides insights into methods targeting HSCs properties like proliferation, self-renewal, differentiation, and apoptosis. Modeling Stem Cell Behavior: Explore stem cell behavior through animal models, bridging laboratory studies to real-world clinical allogeneic HSC transplantation (HSCT) scenarios. Bioinformatics-Driven Translational Research: Navigate a path from bench to bedside with cutting-edge bioinformatics approaches, translating computational insights into tangible advancements in stem cell research and medical applications. Interdisciplinary Resource: Discover a single comprehensive resource catering to biomedical sciences, life sciences, and chemistry fields, offering essential insights into computational tools vital for modern research.
Author : Heitor Lopes
Publisher : BoD – Books on Demand
ISBN 13 : 9533076291
Total Pages : 460 pages
Book Rating : 4.5/5 (33 download)
Download or read book Computational Biology and Applied Bioinformatics written by Heitor Lopes and published by BoD – Books on Demand. This book was released on 2011-09-02 with total page 460 pages. Available in PDF, EPUB and Kindle. Book excerpt: Nowadays it is difficult to imagine an area of knowledge that can continue developing without the use of computers and informatics. It is not different with biology, that has seen an unpredictable growth in recent decades, with the rise of a new discipline, bioinformatics, bringing together molecular biology, biotechnology and information technology. More recently, the development of high throughput techniques, such as microarray, mass spectrometry and DNA sequencing, has increased the need of computational support to collect, store, retrieve, analyze, and correlate huge data sets of complex information. On the other hand, the growth of the computational power for processing and storage has also increased the necessity for deeper knowledge in the field. The development of bioinformatics has allowed now the emergence of systems biology, the study of the interactions between the components of a biological system, and how these interactions give rise to the function and behavior of a living being. This book presents some theoretical issues, reviews, and a variety of bioinformatics applications. For better understanding, the chapters were grouped in two parts. In Part I, the chapters are more oriented towards literature review and theoretical issues. Part II consists of application-oriented chapters that report case studies in which a specific biological problem is treated with bioinformatics tools.
Author : Hamid R Arabnia
Publisher : Morgan Kaufmann
ISBN 13 : 0128026464
Total Pages : 670 pages
Book Rating : 4.1/5 (28 download)
Download or read book Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology written by Hamid R Arabnia and published by Morgan Kaufmann. This book was released on 2015-08-11 with total page 670 pages. Available in PDF, EPUB and Kindle. Book excerpt: Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology discusses the latest developments in all aspects of computational biology, bioinformatics, and systems biology and the application of data-analytics and algorithms, mathematical modeling, and simu- lation techniques. • Discusses the development and application of data-analytical and theoretical methods, mathematical modeling, and computational simulation techniques to the study of biological and behavioral systems, including applications in cancer research, computational intelligence and drug design, high-performance computing, and biology, as well as cloud and grid computing for the storage and access of big data sets. • Presents a systematic approach for storing, retrieving, organizing, and analyzing biological data using software tools with applications to general principles of DNA/RNA structure, bioinformatics and applications, genomes, protein structure, and modeling and classification, as well as microarray analysis. • Provides a systems biology perspective, including general guidelines and techniques for obtaining, integrating, and analyzing complex data sets from multiple experimental sources using computational tools and software. Topics covered include phenomics, genomics, epigenomics/epigenetics, metabolomics, cell cycle and checkpoint control, and systems biology and vaccination research. • Explains how to effectively harness the power of Big Data tools when data sets are so large and complex that it is difficult to process them using conventional database management systems or traditional data processing applications. - Discusses the development and application of data-analytical and theoretical methods, mathematical modeling and computational simulation techniques to the study of biological and behavioral systems. - Presents a systematic approach for storing, retrieving, organizing and analyzing biological data using software tools with applications. - Provides a systems biology perspective including general guidelines and techniques for obtaining, integrating and analyzing complex data sets from multiple experimental sources using computational tools and software.
Author : International Workshop on High Performance Computational Biology
Publisher :
ISBN 13 :
Total Pages : 100 pages
Book Rating : 4.:/5 (254 download)
Download or read book Third IEEE International Workshop on High Performance Computational Biology (HiComb 2004) written by International Workshop on High Performance Computational Biology and published by . This book was released on 2005 with total page 100 pages. Available in PDF, EPUB and Kindle. Book excerpt:
