Parallel Computing For Bioinformatics And Computational Biology

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Parallel Computing for Bioinformatics and Computational Biology

Author : Albert Y. Zomaya
Publisher : John Wiley & Sons
ISBN 13 : 0471756490
Total Pages : 814 pages
Book Rating : 4.4/5 (717 download)

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Book Synopsis Parallel Computing for Bioinformatics and Computational Biology by : Albert Y. Zomaya

Download or read book Parallel Computing for Bioinformatics and Computational Biology written by Albert Y. Zomaya and published by John Wiley & Sons. This book was released on 2006-04-14 with total page 814 pages. Available in PDF, EPUB and Kindle. Book excerpt: Discover how to streamline complex bioinformatics applications with parallel computing This publication enables readers to handle more complex bioinformatics applications and larger and richer data sets. As the editor clearly shows, using powerful parallel computing tools can lead to significant breakthroughs in deciphering genomes, understanding genetic disease, designing customized drug therapies, and understanding evolution. A broad range of bioinformatics applications is covered with demonstrations on how each one can be parallelized to improve performance and gain faster rates of computation. Current parallel computing techniques and technologies are examined, including distributed computing and grid computing. Readers are provided with a mixture of algorithms, experiments, and simulations that provide not only qualitative but also quantitative insights into the dynamic field of bioinformatics. Parallel Computing for Bioinformatics and Computational Biology is a contributed work that serves as a repository of case studies, collectively demonstrating how parallel computing streamlines difficult problems in bioinformatics and produces better results. Each of the chapters is authored by an established expert in the field and carefully edited to ensure a consistent approach and high standard throughout the publication. The work is organized into five parts: * Algorithms and models * Sequence analysis and microarrays * Phylogenetics * Protein folding * Platforms and enabling technologies Researchers, educators, and students in the field of bioinformatics will discover how high-performance computing can enable them to handle more complex data sets, gain deeper insights, and make new discoveries.

Bioinformatics

Author : Bertil Schmidt
Publisher : CRC Press
ISBN 13 : 1439814899
Total Pages : 370 pages
Book Rating : 4.4/5 (398 download)

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Book Synopsis Bioinformatics by : Bertil Schmidt

Download or read book Bioinformatics written by Bertil Schmidt and published by CRC Press. This book was released on 2010-07-15 with total page 370 pages. Available in PDF, EPUB and Kindle. Book excerpt: New sequencing technologies have broken many experimental barriers to genome scale sequencing, leading to the extraction of huge quantities of sequence data. This expansion of biological databases established the need for new ways to harness and apply the astounding amount of available genomic information and convert it into substantive biological

Euro-Par 2006 Workshops: Parallel Processing

Author : Wolfgang Lehner
Publisher : Springer
ISBN 13 : 3540723374
Total Pages : 332 pages
Book Rating : 4.5/5 (47 download)

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Book Synopsis Euro-Par 2006 Workshops: Parallel Processing by : Wolfgang Lehner

Download or read book Euro-Par 2006 Workshops: Parallel Processing written by Wolfgang Lehner and published by Springer. This book was released on 2007-06-27 with total page 332 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the thoroughly refereed joint post-proceedings of the three International Workshops on Grid Middleware, CoreGrid 2006, the UNICORE Summit 2006, and the Workshop on Petascale Computational Biology and Bioinformatics, held in Dresden, Germany, in August/September 2006, in conjunction with Euro-Par 2006, the 12th International Conference on Parallel Computing.

Euro-Par 2006 Workshops: Parallel Processing

Author : Wolfgang Lehner
Publisher : Springer
ISBN 13 : 9783540722267
Total Pages : 332 pages
Book Rating : 4.7/5 (222 download)

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Book Synopsis Euro-Par 2006 Workshops: Parallel Processing by : Wolfgang Lehner

Download or read book Euro-Par 2006 Workshops: Parallel Processing written by Wolfgang Lehner and published by Springer. This book was released on 2007-05-29 with total page 332 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the thoroughly refereed joint post-proceedings of the three International Workshops on Grid Middleware, CoreGrid 2006, the UNICORE Summit 2006, and the Workshop on Petascale Computational Biology and Bioinformatics, held in Dresden, Germany, in August/September 2006, in conjunction with Euro-Par 2006, the 12th International Conference on Parallel Computing.

Grid Computing for Bioinformatics and Computational Biology

Author : El-Ghazali Talbi
Publisher : John Wiley & Sons
ISBN 13 : 9780470191620
Total Pages : 400 pages
Book Rating : 4.1/5 (916 download)

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Book Synopsis Grid Computing for Bioinformatics and Computational Biology by : El-Ghazali Talbi

Download or read book Grid Computing for Bioinformatics and Computational Biology written by El-Ghazali Talbi and published by John Wiley & Sons. This book was released on 2007-12-04 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: The only single, up-to-date source for Grid issues in bioinformatics and biology Bioinformatics is fast emerging as an important discipline for academic research and industrial applications, creating a need for the use of Grid computing techniques for large-scale distributed applications. This book successfully presents Grid algorithms and their real-world applications, provides details on modern and ongoing research, and explores software frameworks that integrate bioinformatics and computational biology. Additional coverage includes: * Bio-ontology and data mining * Data visualization * DNA assembly, clustering, and mapping * Molecular evolution and phylogeny * Gene expression and micro-arrays * Molecular modeling and simulation * Sequence search and alignment * Protein structure prediction * Grid infrastructure, middleware, and tools for bio data Grid Computing for Bioinformatics and Computational Biology is an indispensable resource for professionals in several research and development communities including bioinformatics, computational biology, Grid computing, data mining, and more. It also serves as an ideal textbook for undergraduate- and graduate-level courses in bioinformatics and Grid computing.

High-throughput Image Reconstruction and Analysis

Author : A. Ravishankar Rao
Publisher : Artech House
ISBN 13 : 1596932961
Total Pages : 353 pages
Book Rating : 4.5/5 (969 download)

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Book Synopsis High-throughput Image Reconstruction and Analysis by : A. Ravishankar Rao

Download or read book High-throughput Image Reconstruction and Analysis written by A. Ravishankar Rao and published by Artech House. This book was released on 2009 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: This innovative volume surveys the latest image acquisition advances in serial block face techniques in scanning electron microscopy, knife-edge scanning microscopy, and 4D imaging of multi-component biological systems. The book introduces parallel processing for biological applications. You learn advanced parallelization techniques for decomposing a problem domain and mapping it onto a parallel processing architecture using the message-passing interface (MPI) and OpenMP. Case studies show how these techniques have been successfully used in simulation tasks, data mining, and graphical visualization of biological datasets. You also find coverage of methods for developing scalable biological image databases and for facilitating greater interactive visualization of large image sets.

Emerging Trends in Applications and Infrastructures for Computational Biology, Bioinformatics, and Systems Biology

Author : Hamid R Arabnia
Publisher : Morgan Kaufmann
ISBN 13 : 0128042591
Total Pages : 592 pages
Book Rating : 4.1/5 (28 download)

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Book Synopsis Emerging Trends in Applications and Infrastructures for Computational Biology, Bioinformatics, and Systems Biology by : Hamid R Arabnia

Download or read book Emerging Trends in Applications and Infrastructures for Computational Biology, Bioinformatics, and Systems Biology written by Hamid R Arabnia and published by Morgan Kaufmann. This book was released on 2016-03-25 with total page 592 pages. Available in PDF, EPUB and Kindle. Book excerpt: Emerging Trends in Applications and Infrastructures for Computational Biology, Bioinformatics, and Systems Biology: Systems and Applications covers the latest trends in the field with special emphasis on their applications. The first part covers the major areas of computational biology, development and application of data-analytical and theoretical methods, mathematical modeling, and computational simulation techniques for the study of biological and behavioral systems. The second part covers bioinformatics, an interdisciplinary field concerned with methods for storing, retrieving, organizing, and analyzing biological data. The book also explores the software tools used to generate useful biological knowledge. The third part, on systems biology, explores how to obtain, integrate, and analyze complex datasets from multiple experimental sources using interdisciplinary tools and techniques, with the final section focusing on big data and the collection of datasets so large and complex that it becomes difficult to process using conventional database management systems or traditional data processing applications. Explores all the latest advances in this fast-developing field from an applied perspective Provides the only coherent and comprehensive treatment of the subject available Covers the algorithm development, software design, and database applications that have been developed to foster research

Bioinformatics and Computational Biology

Author : Basant K. Tiwary
Publisher : Springer Nature
ISBN 13 : 9811642419
Total Pages : 239 pages
Book Rating : 4.8/5 (116 download)

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Book Synopsis Bioinformatics and Computational Biology by : Basant K. Tiwary

Download or read book Bioinformatics and Computational Biology written by Basant K. Tiwary and published by Springer Nature. This book was released on 2021-11-23 with total page 239 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook introduces fundamental concepts of bioinformatics and computational biology to the students and researchers in biology, medicine, veterinary science, agriculture, and bioengineering . The respective chapters provide detailed information on biological databases, sequence alignment, molecular evolution, next-generation sequencing, systems biology, and statistical computing using R. The book also presents a case-based discussion on clinical, veterinary, agricultural bioinformatics, and computational bioengineering for application-based learning in the respective fields. Further, it offers readers guidance on reconstructing and analysing biological networks and highlights computational methods used in systems medicine and genome-wide association mapping of diseases. Given its scope, this textbook offers an essential introductory book on bioinformatics and computational biology for undergraduate and graduate students in the life sciences, botany, zoology, physiology, biotechnology, bioinformatics, and genomic science as well as systems biology, bioengineering and the agricultural, and veterinary sciences.

Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology

Author : Hamid R Arabnia
Publisher : Morgan Kaufmann
ISBN 13 : 0128026464
Total Pages : 670 pages
Book Rating : 4.1/5 (28 download)

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Book Synopsis Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology by : Hamid R Arabnia

Download or read book Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology written by Hamid R Arabnia and published by Morgan Kaufmann. This book was released on 2015-08-11 with total page 670 pages. Available in PDF, EPUB and Kindle. Book excerpt: Emerging Trends in Computational Biology, Bioinformatics, and Systems Biology discusses the latest developments in all aspects of computational biology, bioinformatics, and systems biology and the application of data-analytics and algorithms, mathematical modeling, and simu- lation techniques. • Discusses the development and application of data-analytical and theoretical methods, mathematical modeling, and computational simulation techniques to the study of biological and behavioral systems, including applications in cancer research, computational intelligence and drug design, high-performance computing, and biology, as well as cloud and grid computing for the storage and access of big data sets. • Presents a systematic approach for storing, retrieving, organizing, and analyzing biological data using software tools with applications to general principles of DNA/RNA structure, bioinformatics and applications, genomes, protein structure, and modeling and classification, as well as microarray analysis. • Provides a systems biology perspective, including general guidelines and techniques for obtaining, integrating, and analyzing complex data sets from multiple experimental sources using computational tools and software. Topics covered include phenomics, genomics, epigenomics/epigenetics, metabolomics, cell cycle and checkpoint control, and systems biology and vaccination research. • Explains how to effectively harness the power of Big Data tools when data sets are so large and complex that it is difficult to process them using conventional database management systems or traditional data processing applications. Discusses the development and application of data-analytical and theoretical methods, mathematical modeling and computational simulation techniques to the study of biological and behavioral systems. Presents a systematic approach for storing, retrieving, organizing and analyzing biological data using software tools with applications. Provides a systems biology perspective including general guidelines and techniques for obtaining, integrating and analyzing complex data sets from multiple experimental sources using computational tools and software.

Advances in Computers

Author : Marvin Zelkowitz
Publisher : Elsevier
ISBN 13 : 0080466346
Total Pages : 335 pages
Book Rating : 4.0/5 (84 download)

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Book Synopsis Advances in Computers by : Marvin Zelkowitz

Download or read book Advances in Computers written by Marvin Zelkowitz and published by Elsevier. This book was released on 2006-12-11 with total page 335 pages. Available in PDF, EPUB and Kindle. Book excerpt: The field of bioinformatics and computational biology arose due to the need to apply techniques from computer science, statistics, informatics, and applied mathematics to solve biological problems. Scientists have been trying to study biology at a molecular level using techniques derived from biochemistry, biophysics, and genetics. Progress has greatly accelerated with the discovery of fast and inexpensive automated DNA sequencing techniques. As the genomes of more and more organisms are sequenced and assembled, scientists are discovering many useful facts by tracing the evolution of organisms by measuring changes in their DNA, rather than through physical characteristics alone. This has led to rapid growth in the related fields of phylogenetics, the study of evolutionary relatedness among various groups of organisms, and comparative genomics, the study of the correspondence between genes and other genomic features in different organisms. Comparing the genomes of organisms has allowed researchers to better understand the features and functions of DNA in individual organisms, as well as provide insights into how organisms evolve over time. The first four chapters of Advances in Computers focus on algorithms for comparing the genomes of different organisms. Possible concrete applications include identifying the basis for genetic diseases and tracking the development and spread of different forms of Avian flu. As researchers begin to better understand the function of DNA, attention has begun shifting towards the actual proteins produced by DNA. The final two chapters explore proteomic techniques for analyzing proteins directly to identify their presence and understand their physical structure. Written by active PhD researchers in computational biology and bioinformatics

Advances in Bioinformatics and Computational Biology

Author : Marie-France Sagot
Publisher : Springer
ISBN 13 : 3540737316
Total Pages : 177 pages
Book Rating : 4.5/5 (47 download)

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Book Synopsis Advances in Bioinformatics and Computational Biology by : Marie-France Sagot

Download or read book Advances in Bioinformatics and Computational Biology written by Marie-France Sagot and published by Springer. This book was released on 2007-08-14 with total page 177 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Second Brazilian Symposium on Bioinformatics, BSB 2007, held in Angra dos Reis, Brazil, in August 2007, co-located with IWGD 2007, the International Workshop on Genomic Databases. The papers address a broad range of current topics in computational biology and bioinformatics.

Artificial Intelligence in Bioinformatics

Author : Mario Cannataro
Publisher : Elsevier
ISBN 13 : 0128229292
Total Pages : 270 pages
Book Rating : 4.1/5 (282 download)

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Book Synopsis Artificial Intelligence in Bioinformatics by : Mario Cannataro

Download or read book Artificial Intelligence in Bioinformatics written by Mario Cannataro and published by Elsevier. This book was released on 2022-05-12 with total page 270 pages. Available in PDF, EPUB and Kindle. Book excerpt: Artificial Intelligence in Bioinformatics: From Omics Analysis to Deep Learning and Network Mining reviews the main applications of the topic, from omics analysis to deep learning and network mining. The book includes a rigorous introduction on bioinformatics, also reviewing how methods are incorporated in tasks and processes. In addition, it presents methods and theory, including content for emergent fields such as Sentiment Analysis and Network Alignment. Other sections survey how Artificial Intelligence is exploited in bioinformatics applications, including sequence analysis, structure analysis, functional analysis, protein classification, omics analysis, biomarker discovery, integrative bioinformatics, protein interaction analysis, metabolic networks analysis, and much more. Bridges the gap between computer science and bioinformatics, combining an introduction to Artificial Intelligence methods with a systematic review of its applications in the life sciences Brings readers up-to-speed on current trends and methods in a dynamic and growing field Provides academic teachers with a complete resource, covering fundamental concepts as well as applications

Encyclopedia of Bioinformatics and Computational Biology

Author :
Publisher : Elsevier
ISBN 13 : 0128114320
Total Pages : 3421 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Encyclopedia of Bioinformatics and Computational Biology by :

Download or read book Encyclopedia of Bioinformatics and Computational Biology written by and published by Elsevier. This book was released on 2018-08-21 with total page 3421 pages. Available in PDF, EPUB and Kindle. Book excerpt: Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics, Three Volume Set combines elements of computer science, information technology, mathematics, statistics and biotechnology, providing the methodology and in silico solutions to mine biological data and processes. The book covers Theory, Topics and Applications, with a special focus on Integrative –omics and Systems Biology. The theoretical, methodological underpinnings of BCB, including phylogeny are covered, as are more current areas of focus, such as translational bioinformatics, cheminformatics, and environmental informatics. Finally, Applications provide guidance for commonly asked questions. This major reference work spans basic and cutting-edge methodologies authored by leaders in the field, providing an invaluable resource for students, scientists, professionals in research institutes, and a broad swath of researchers in biotechnology and the biomedical and pharmaceutical industries. Brings together information from computer science, information technology, mathematics, statistics and biotechnology Written and reviewed by leading experts in the field, providing a unique and authoritative resource Focuses on the main theoretical and methodological concepts before expanding on specific topics and applications Includes interactive images, multimedia tools and crosslinking to further resources and databases

Sequence Analysis and Parallel Computing

Author : Yongxian Wang
Publisher : de Gruyter
ISBN 13 : 9783110462081
Total Pages : 330 pages
Book Rating : 4.4/5 (62 download)

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Book Synopsis Sequence Analysis and Parallel Computing by : Yongxian Wang

Download or read book Sequence Analysis and Parallel Computing written by Yongxian Wang and published by de Gruyter. This book was released on 2020-05-30 with total page 330 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents algorithms in proteomics and biological networks and explains biological background and mathematical theories behind them. Focussing on the realization of algorithms in scientific computing the book enables an easy entry to bioinformatics for researchers with computer science background.

Bioinformatics and Computational Biology Solutions Using R and Bioconductor

Author : Robert Gentleman
Publisher : Springer Science & Business Media
ISBN 13 : 0387293620
Total Pages : 478 pages
Book Rating : 4.3/5 (872 download)

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Book Synopsis Bioinformatics and Computational Biology Solutions Using R and Bioconductor by : Robert Gentleman

Download or read book Bioinformatics and Computational Biology Solutions Using R and Bioconductor written by Robert Gentleman and published by Springer Science & Business Media. This book was released on 2005-12-29 with total page 478 pages. Available in PDF, EPUB and Kindle. Book excerpt: Full four-color book. Some of the editors created the Bioconductor project and Robert Gentleman is one of the two originators of R. All methods are illustrated with publicly available data, and a major section of the book is devoted to fully worked case studies. Code underlying all of the computations that are shown is made available on a companion website, and readers can reproduce every number, figure, and table on their own computers.

Information Processing and Living Systems

Author : Vladimir B. Baji?
Publisher : World Scientific
ISBN 13 : 1860945635
Total Pages : 800 pages
Book Rating : 4.8/5 (69 download)

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Book Synopsis Information Processing and Living Systems by : Vladimir B. Baji?

Download or read book Information Processing and Living Systems written by Vladimir B. Baji? and published by World Scientific. This book was released on 2005 with total page 800 pages. Available in PDF, EPUB and Kindle. Book excerpt: Information processing and information flow occur in the course of an organism's development and throughout its lifespan. Organisms do not exist in isolation, but interact with each other constantly within a complex ecosystem. The relationships between organisms, such as those between prey or predator, host and parasite, and between mating partners, are complex and multidimensional. In all cases, there is constant communication and information flow at many levels.This book focuses on information processing by life forms and the use of information technology in understanding them. Readers are first given a comprehensive overview of biocomputing before navigating the complex terrain of natural processing of biological information using physiological and analogous computing models. The remainder of the book deals with ?artificial? processing of biological information as a human endeavor in order to derive new knowledge and gain insight into life forms and their functioning. Specific innovative applications and tools for biological discovery are provided as the link and complement to biocomputing.Since ?artificial? processing of biological information is complementary to natural processing, a better understanding of the former helps us improve the latter. Consequently, readers are exposed to both domains and, when dealing with biological problems of their interest, will be better equipped to grasp relevant ideas.

Distributed, High-Performance and Grid Computing in Computational Biology

Author : Werner Dubitzky
Publisher : Springer
ISBN 13 : 3540699686
Total Pages : 192 pages
Book Rating : 4.5/5 (46 download)

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Book Synopsis Distributed, High-Performance and Grid Computing in Computational Biology by : Werner Dubitzky

Download or read book Distributed, High-Performance and Grid Computing in Computational Biology written by Werner Dubitzky and published by Springer. This book was released on 2007-03-07 with total page 192 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book constitutes the refereed proceedings of the International Workshop on Distributed, High-Performance and Grid Computing in Computational Biology, GCCB 2006, held in Eilat, Israel in January 2007 in conjunction with the 5th European Conference on Computational Biology, ECCB 2006. The 13 revised full papers presented were carefully reviewed and selected from many high quality submissions.