Data Integration Manipulation And Visualization Of Phylogenetic Trees

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Data Integration, Manipulation and Visualization of Phylogenetic Trees

Author : Guangchuang Yu
Publisher : CRC Press
ISBN 13 : 1000613011
Total Pages : 298 pages
Book Rating : 4.0/5 (6 download)

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Book Synopsis Data Integration, Manipulation and Visualization of Phylogenetic Trees by : Guangchuang Yu

Download or read book Data Integration, Manipulation and Visualization of Phylogenetic Trees written by Guangchuang Yu and published by CRC Press. This book was released on 2022-08-26 with total page 298 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data Integration, Manipulation and Visualization of Phylogenetic Trees introduces and demonstrates data integration, manipulation and visualization of phylogenetic trees using a suite of R packages, tidytree, treeio, ggtree and ggtreeExtra. Using the most comprehensive packages for phylogenetic data integration and visualization, contains numerous examples that can be used for teaching and learning. Ideal for undergraduate readers and researchers with a working knowledge of R and ggplot2. Key Features: Manipulating phylogenetic tree with associated data using tidy verbs Integrating phylogenetic data from diverse sources Visualizing phylogenetic data using grammar of graphics

Data Integration, Manipulation and Visualization of Phylogenetic Trees

Author : Guangchuang Yu
Publisher :
ISBN 13 : 9781032245546
Total Pages : pages
Book Rating : 4.2/5 (455 download)

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Book Synopsis Data Integration, Manipulation and Visualization of Phylogenetic Trees by : Guangchuang Yu

Download or read book Data Integration, Manipulation and Visualization of Phylogenetic Trees written by Guangchuang Yu and published by . This book was released on 2022 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: "Data Integration, Manipulation and Visualization of Phylogenetic Trees introduces and demonstrates data integration, manipulation and visualization of phylogenetic trees using a suite of R packages, tidytree, treeio, ggtree and ggtreeExtra. Using the most comprehensive packages for phylogenetic data integration and visualization, contains numerous examples that can be used for teaching and learning. Ideal for undergraduate readers and researchers with a working knowledge of R and ggplot2"--

Data Integration, Manipulation and Visualization of Phylogenetic Trees

Author : Guangchuang Yu
Publisher : CRC Press
ISBN 13 : 9781003279242
Total Pages : 0 pages
Book Rating : 4.2/5 (792 download)

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Book Synopsis Data Integration, Manipulation and Visualization of Phylogenetic Trees by : Guangchuang Yu

Download or read book Data Integration, Manipulation and Visualization of Phylogenetic Trees written by Guangchuang Yu and published by CRC Press. This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Data Integration, Manipulation and Visualization of Phylogenetic Trees introduces and demonstrates data integration, manipulation and visualization of phylogenetic trees using a suite of R packages, tidytree, treeio, ggtree and ggtreeExtra. Using the most comprehensive packages for phylogenetic data integration and visualization, contains numerous examples that can be used for teaching and learning. Ideal for undergraduate readers and researchers with a working knowledge of R and ggplot2"--

Analysis of Phylogenetics and Evolution with R

Author : Emmanuel Paradis
Publisher : Springer Science & Business Media
ISBN 13 : 0387351000
Total Pages : 221 pages
Book Rating : 4.3/5 (873 download)

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Book Synopsis Analysis of Phylogenetics and Evolution with R by : Emmanuel Paradis

Download or read book Analysis of Phylogenetics and Evolution with R written by Emmanuel Paradis and published by Springer Science & Business Media. This book was released on 2006-11-25 with total page 221 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.

Text Mining with R

Author : Julia Silge
Publisher : "O'Reilly Media, Inc."
ISBN 13 : 1491981628
Total Pages : 193 pages
Book Rating : 4.4/5 (919 download)

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Book Synopsis Text Mining with R by : Julia Silge

Download or read book Text Mining with R written by Julia Silge and published by "O'Reilly Media, Inc.". This book was released on 2017-06-12 with total page 193 pages. Available in PDF, EPUB and Kindle. Book excerpt: Chapter 7. Case Study : Comparing Twitter Archives; Getting the Data and Distribution of Tweets; Word Frequencies; Comparing Word Usage; Changes in Word Use; Favorites and Retweets; Summary; Chapter 8. Case Study : Mining NASA Metadata; How Data Is Organized at NASA; Wrangling and Tidying the Data; Some Initial Simple Exploration; Word Co-ocurrences and Correlations; Networks of Description and Title Words; Networks of Keywords; Calculating tf-idf for the Description Fields; What Is tf-idf for the Description Field Words?; Connecting Description Fields to Keywords; Topic Modeling.

Practical Protein Bioinformatics

Author : Florencio Pazos
Publisher : Springer
ISBN 13 : 3319127276
Total Pages : 106 pages
Book Rating : 4.3/5 (191 download)

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Book Synopsis Practical Protein Bioinformatics by : Florencio Pazos

Download or read book Practical Protein Bioinformatics written by Florencio Pazos and published by Springer. This book was released on 2014-11-28 with total page 106 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes more than 60 web-accessible computational tools for protein analysis and is totally practical, with detailed explanations on how to use these tools and interpret their results and minimal mentions to their theoretical basis (only when that is required for making a better use of them). It covers a wide range of tools for dealing with different aspects of proteins, from their sequences, to their three-dimensional structures, and the biological networks they are immersed in. The selection of tools is based on the experience of the authors that lead a protein bioinformatics facility in a large research centre, with the additional constraint that the tools should be accessible through standard web browsers without requiring the local installation of specific software, command-line tools, etc. The web tools covered include those aimed to retrieve protein information, look for similar proteins, generate pair-wise and multiple sequence alignments of protein sequences, work with protein domains and motifs, study the phylogeny of a family of proteins, retrieve, manipulate and visualize protein three-dimensional structures, predict protein structural features as well as whole three-dimensional structures, extract biological information from protein structures, summarize large protein sets, study protein interaction and metabolic networks, etc. The book is associated to a dynamic web site that will reflect changes in the web addresses of the tools, updates of these, etc. It also contains QR codes that can be scanned with any device to direct its browser to the tool web site. This monograph will be most valuable for researchers in experimental labs without specific knowledge on bioinformatics or computing.

Functional and Phylogenetic Ecology in R

Author : Nathan G. Swenson
Publisher : Springer Science & Business Media
ISBN 13 : 1461495423
Total Pages : 217 pages
Book Rating : 4.4/5 (614 download)

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Book Synopsis Functional and Phylogenetic Ecology in R by : Nathan G. Swenson

Download or read book Functional and Phylogenetic Ecology in R written by Nathan G. Swenson and published by Springer Science & Business Media. This book was released on 2014-03-26 with total page 217 pages. Available in PDF, EPUB and Kindle. Book excerpt: Functional and Phylogenetic Ecology in R is designed to teach readers to use R for phylogenetic and functional trait analyses. Over the past decade, a dizzying array of tools and methods were generated to incorporate phylogenetic and functional information into traditional ecological analyses. Increasingly these tools are implemented in R, thus greatly expanding their impact. Researchers getting started in R can use this volume as a step-by-step entryway into phylogenetic and functional analyses for ecology in R. More advanced users will be able to use this volume as a quick reference to understand particular analyses. The volume begins with an introduction to the R environment and handling relevant data in R. Chapters then cover phylogenetic and functional metrics of biodiversity; null modeling and randomizations for phylogenetic and functional trait analyses; integrating phylogenetic and functional trait information; and interfacing the R environment with a popular C-based program. This book presents a unique approach through its focus on ecological analyses and not macroevolutionary analyses. The author provides his own code, so that the reader is guided through the computational steps to calculate the desired metrics. This guided approach simplifies the work of determining which package to use for any given analysis. Example datasets are shared to help readers practice, and readers can then quickly turn to their own datasets.

Mastering Spark with R

Author : Javier Luraschi
Publisher : "O'Reilly Media, Inc."
ISBN 13 : 1492046329
Total Pages : 296 pages
Book Rating : 4.4/5 (92 download)

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Book Synopsis Mastering Spark with R by : Javier Luraschi

Download or read book Mastering Spark with R written by Javier Luraschi and published by "O'Reilly Media, Inc.". This book was released on 2019-10-07 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: If you’re like most R users, you have deep knowledge and love for statistics. But as your organization continues to collect huge amounts of data, adding tools such as Apache Spark makes a lot of sense. With this practical book, data scientists and professionals working with large-scale data applications will learn how to use Spark from R to tackle big data and big compute problems. Authors Javier Luraschi, Kevin Kuo, and Edgar Ruiz show you how to use R with Spark to solve different data analysis problems. This book covers relevant data science topics, cluster computing, and issues that should interest even the most advanced users. Analyze, explore, transform, and visualize data in Apache Spark with R Create statistical models to extract information and predict outcomes; automate the process in production-ready workflows Perform analysis and modeling across many machines using distributed computing techniques Use large-scale data from multiple sources and different formats with ease from within Spark Learn about alternative modeling frameworks for graph processing, geospatial analysis, and genomics at scale Dive into advanced topics including custom transformations, real-time data processing, and creating custom Spark extensions

Modern Statistics for Modern Biology

Author : SUSAN. HUBER HOLMES (WOLFGANG.)
Publisher : Cambridge University Press
ISBN 13 : 1108427022
Total Pages : 407 pages
Book Rating : 4.1/5 (84 download)

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Book Synopsis Modern Statistics for Modern Biology by : SUSAN. HUBER HOLMES (WOLFGANG.)

Download or read book Modern Statistics for Modern Biology written by SUSAN. HUBER HOLMES (WOLFGANG.) and published by Cambridge University Press. This book was released on 2018 with total page 407 pages. Available in PDF, EPUB and Kindle. Book excerpt:

The R Book

Author : Michael J. Crawley
Publisher : John Wiley & Sons
ISBN 13 : 9780470515068
Total Pages : 953 pages
Book Rating : 4.5/5 (15 download)

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Book Synopsis The R Book by : Michael J. Crawley

Download or read book The R Book written by Michael J. Crawley and published by John Wiley & Sons. This book was released on 2007-06-13 with total page 953 pages. Available in PDF, EPUB and Kindle. Book excerpt: The high-level language of R is recognized as one of the mostpowerful and flexible statistical software environments, and israpidly becoming the standard setting for quantitative analysis,statistics and graphics. R provides free access to unrivalledcoverage and cutting-edge applications, enabling the user to applynumerous statistical methods ranging from simple regression to timeseries or multivariate analysis. Building on the success of the author’s bestsellingStatistics: An Introduction using R, The R Book ispacked with worked examples, providing an all inclusive guide to R,ideal for novice and more accomplished users alike. The bookassumes no background in statistics or computing and introduces theadvantages of the R environment, detailing its applications in awide range of disciplines. Provides the first comprehensive reference manual for the Rlanguage, including practical guidance and full coverage of thegraphics facilities. Introduces all the statistical models covered by R, beginningwith simple classical tests such as chi-square and t-test. Proceeds to examine more advance methods, from regression andanalysis of variance, through to generalized linear models,generalized mixed models, time series, spatial statistics,multivariate statistics and much more. The R Book is aimed at undergraduates, postgraduates andprofessionals in science, engineering and medicine. It is alsoideal for students and professionals in statistics, economics,geography and the social sciences.

Practical R for Mass Communication and Journalism

Author : Sharon Machlis
Publisher : CRC Press
ISBN 13 : 0429681755
Total Pages : 379 pages
Book Rating : 4.4/5 (296 download)

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Book Synopsis Practical R for Mass Communication and Journalism by : Sharon Machlis

Download or read book Practical R for Mass Communication and Journalism written by Sharon Machlis and published by CRC Press. This book was released on 2018-12-21 with total page 379 pages. Available in PDF, EPUB and Kindle. Book excerpt: Do you want to use R to tell stories? This book was written for you—whether you already know some R or have never coded before. Most R texts focus only on programming or statistical theory. Practical R for Mass Communication and Journalism gives you ideas, tools, and techniques for incorporating data and visualizations into your narratives. You’ll see step by step how to: Analyze airport flight delays, restaurant inspections, and election results Map bank locations, median incomes, and new voting districts Compare campaign contributions to final election results Extract data from PDFs Whip messy data into shape for analysis Scrape data from a website Create graphics ranging from simple, static charts to interactive visualizations for the Web If you work or plan to work in a newsroom, government office, non-profit policy organization, or PR office, Practical R for Mass Communication and Journalism will help you use R in your world. This book has a companion website with code, links to additional resources, and searchable tables by function and task. Sharon Machlis is the author of Computerworld’s Beginner’s Guide to R, host of InfoWorld’s Do More With R video screencast series, admin for the R for Journalists Google Group, and is well known among Twitter users who follow the #rstats hashtag. She is Director of Editorial Data and Analytics at IDG Communications (parent company of Computerworld, InfoWorld, PC World and Macworld, among others) and a frequent speaker at data journalism and R conferences.

Basketball Data Science

Author : Paola Zuccolotto
Publisher : CRC Press
ISBN 13 : 0429894260
Total Pages : 245 pages
Book Rating : 4.4/5 (298 download)

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Book Synopsis Basketball Data Science by : Paola Zuccolotto

Download or read book Basketball Data Science written by Paola Zuccolotto and published by CRC Press. This book was released on 2020-01-03 with total page 245 pages. Available in PDF, EPUB and Kindle. Book excerpt: Using data from one season of NBA games, Basketball Data Science: With Applications in R is the perfect book for anyone interested in learning and applying data analytics in basketball. Whether assessing the spatial performance of an NBA player's shots or doing an analysis of the impact of high pressure game situations on the probability of scoring, this book discusses a variety of case studies and hands-on examples using a custom R package. The codes are supplied so readers can reproduce the analyses themselves or create their own. Assuming a basic statistical knowledge, Basketball Data Science with R is suitable for students, technicians, coaches, data analysts and applied researchers. Features: One of the first books to provide statistical and data mining methods for the growing field of analytics in basketball Presents tools for modelling graphs and figures to visualize the data Includes real world case studies and examples, such as estimations of scoring probability using the Golden State Warriors as a test case Provides the source code and data so readers can do their own analyses on NBA teams and players

Dynamic Homology and Phylogenetic Systematics

Author : Ward Wheeler
Publisher :
ISBN 13 :
Total Pages : 380 pages
Book Rating : 4.X/5 (3 download)

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Book Synopsis Dynamic Homology and Phylogenetic Systematics by : Ward Wheeler

Download or read book Dynamic Homology and Phylogenetic Systematics written by Ward Wheeler and published by . This book was released on 2006 with total page 380 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Visualizing Data

Author : Ben Fry
Publisher : "O'Reilly Media, Inc."
ISBN 13 : 0596519303
Total Pages : 384 pages
Book Rating : 4.5/5 (965 download)

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Book Synopsis Visualizing Data by : Ben Fry

Download or read book Visualizing Data written by Ben Fry and published by "O'Reilly Media, Inc.". This book was released on 2008 with total page 384 pages. Available in PDF, EPUB and Kindle. Book excerpt: Provides information on the methods of visualizing data on the Web, along with example projects and code.

Teaching Tech Together

Author : Greg Wilson
Publisher : CRC Press
ISBN 13 : 1000728153
Total Pages : 250 pages
Book Rating : 4.0/5 (7 download)

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Book Synopsis Teaching Tech Together by : Greg Wilson

Download or read book Teaching Tech Together written by Greg Wilson and published by CRC Press. This book was released on 2019-10-08 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: Hundreds of grassroots groups have sprung up around the world to teach programming, web design, robotics, and other skills outside traditional classrooms. These groups exist so that people don't have to learn these things on their own, but ironically, their founders and instructors are often teaching themselves how to teach. There's a better way. This book presents evidence-based practices that will help you create and deliver lessons that work and build a teaching community around them. Topics include the differences between different kinds of learners, diagnosing and correcting misunderstandings, teaching as a performance art, what motivates and demotivates adult learners, how to be a good ally, fostering a healthy community, getting the word out, and building alliances with like-minded groups. The book includes over a hundred exercises that can be done individually or in groups, over 350 references, and a glossary to help you navigate educational jargon.

Interactive Web-Based Data Visualization with R, plotly, and shiny

Author : Carson Sievert
Publisher : CRC Press
ISBN 13 : 0429824203
Total Pages : 278 pages
Book Rating : 4.4/5 (298 download)

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Book Synopsis Interactive Web-Based Data Visualization with R, plotly, and shiny by : Carson Sievert

Download or read book Interactive Web-Based Data Visualization with R, plotly, and shiny written by Carson Sievert and published by CRC Press. This book was released on 2020-01-30 with total page 278 pages. Available in PDF, EPUB and Kindle. Book excerpt: The richly illustrated Interactive Web-Based Data Visualization with R, plotly, and shiny focuses on the process of programming interactive web graphics for multidimensional data analysis. It is written for the data analyst who wants to leverage the capabilities of interactive web graphics without having to learn web programming. Through many R code examples, you will learn how to tap the extensive functionality of these tools to enhance the presentation and exploration of data. By mastering these concepts and tools, you will impress your colleagues with your ability to quickly generate more informative, engaging, and reproducible interactive graphics using free and open source software that you can share over email, export to pdf, and more. Key Features: Convert static ggplot2 graphics to an interactive web-based form Link, animate, and arrange multiple plots in standalone HTML from R Embed, modify, and respond to plotly graphics in a shiny app Learn best practices for visualizing continuous, discrete, and multivariate data Learn numerous ways to visualize geo-spatial data This book makes heavy use of plotly for graphical rendering, but you will also learn about other R packages that support different phases of a data science workflow, such as tidyr, dplyr, and tidyverse. Along the way, you will gain insight into best practices for visualization of high-dimensional data, statistical graphics, and graphical perception. The printed book is complemented by an interactive website where readers can view movies demonstrating the examples and interact with graphics.

Visualization of Time-Oriented Data

Author : Wolfgang Aigner
Publisher : Springer Nature
ISBN 13 : 1447175271
Total Pages : 453 pages
Book Rating : 4.4/5 (471 download)

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Book Synopsis Visualization of Time-Oriented Data by : Wolfgang Aigner

Download or read book Visualization of Time-Oriented Data written by Wolfgang Aigner and published by Springer Nature. This book was released on 2023-12-21 with total page 453 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is an open access book. Time is an exceptional dimension with high relevance in medicine, engineering, business, science, biography, history, planning, or project management. Understanding time-oriented data via visual representations enables us to learn from the past in order to predict, plan, and build the future. This second edition builds upon the great success of the first edition. It maintains a brief introduction to visualization and a review of historical time-oriented visual representations. At its core, the book develops a systematic view of the visualization of time-oriented data. Separate chapters discuss interaction techniques and computational methods for supporting the visual data analysis. Many examples and figures illustrate the introduced concepts and techniques. So, what is new for the second edition? First of all, the second edition is now published as an open-access book so that anyone interested in the visualization of time and time-oriented data can read it. Second, the entire content has been revised and expanded to represent state-of-the-art knowledge. The chapter on interaction support now includes advanced methods for interacting with visual representations of time-oriented data. The second edition also covers the topics of data quality as well as segmentation and labeling. The comprehensive survey of classic and contemporary visualization techniques now provides more than 150 self-contained descriptions accompanied by illustrations and corresponding references. A completely new chapter describes how the structured survey can be used for the guided selection of suitable visualization techniques. For the second edition, our TimeViz Browser, the digital pendant to the survey of visualization techniques, received a major upgrade. It includes the same set of techniques as the book, but comes with additional filter and search facilities allowing scientists and practitioners to find exactly the solutions they are interested in.