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Bayesian Statistics For Experimental Scientists
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Book Synopsis Bayesian Statistics for Experimental Scientists by : Richard A. Chechile
Download or read book Bayesian Statistics for Experimental Scientists written by Richard A. Chechile and published by MIT Press. This book was released on 2020-09-08 with total page 473 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to the Bayesian approach to statistical inference that demonstrates its superiority to orthodox frequentist statistical analysis. This book offers an introduction to the Bayesian approach to statistical inference, with a focus on nonparametric and distribution-free methods. It covers not only well-developed methods for doing Bayesian statistics but also novel tools that enable Bayesian statistical analyses for cases that previously did not have a full Bayesian solution. The book's premise is that there are fundamental problems with orthodox frequentist statistical analyses that distort the scientific process. Side-by-side comparisons of Bayesian and frequentist methods illustrate the mismatch between the needs of experimental scientists in making inferences from data and the properties of the standard tools of classical statistics.
Book Synopsis Bayesian Statistics for the Social Sciences by : David Kaplan
Download or read book Bayesian Statistics for the Social Sciences written by David Kaplan and published by Guilford Publications. This book was released on 2023-10-02 with total page 275 pages. Available in PDF, EPUB and Kindle. Book excerpt: The second edition of this practical book equips social science researchers to apply the latest Bayesian methodologies to their data analysis problems. It includes new chapters on model uncertainty, Bayesian variable selection and sparsity, and Bayesian workflow for statistical modeling. Clearly explaining frequentist and epistemic probability and prior distributions, the second edition emphasizes use of the open-source RStan software package. The text covers Hamiltonian Monte Carlo, Bayesian linear regression and generalized linear models, model evaluation and comparison, multilevel modeling, models for continuous and categorical latent variables, missing data, and more. Concepts are fully illustrated with worked-through examples from large-scale educational and social science databases, such as the Program for International Student Assessment and the Early Childhood Longitudinal Study. Annotated RStan code appears in screened boxes; the companion website (www.guilford.com/kaplan-materials) provides data sets and code for the book's examples. New to This Edition *Utilizes the R interface to Stan--faster and more stable than previously available Bayesian software--for most of the applications discussed. *Coverage of Hamiltonian MC; Cromwell’s rule; Jeffreys' prior; the LKJ prior for correlation matrices; model evaluation and model comparison, with a critique of the Bayesian information criterion; variational Bayes as an alternative to Markov chain Monte Carlo (MCMC) sampling; and other new topics. *Chapters on Bayesian variable selection and sparsity, model uncertainty and model averaging, and Bayesian workflow for statistical modeling.
Book Synopsis Practical Bayesian Inference by : Coryn A. L. Bailer-Jones
Download or read book Practical Bayesian Inference written by Coryn A. L. Bailer-Jones and published by Cambridge University Press. This book was released on 2017-04-27 with total page 306 pages. Available in PDF, EPUB and Kindle. Book excerpt: Science is fundamentally about learning from data, and doing so in the presence of uncertainty. This volume is an introduction to the major concepts of probability and statistics, and the computational tools for analysing and interpreting data. It describes the Bayesian approach, and explains how this can be used to fit and compare models in a range of problems. Topics covered include regression, parameter estimation, model assessment, and Monte Carlo methods, as well as widely used classical methods such as regularization and hypothesis testing. The emphasis throughout is on the principles, the unifying probabilistic approach, and showing how the methods can be implemented in practice. R code (with explanations) is included and is available online, so readers can reproduce the plots and results for themselves. Aimed primarily at undergraduate and graduate students, these techniques can be applied to a wide range of data analysis problems beyond the scope of this work.
Book Synopsis The Subjectivity of Scientists and the Bayesian Approach by : S. James Press
Download or read book The Subjectivity of Scientists and the Bayesian Approach written by S. James Press and published by Courier Dover Publications. This book was released on 2016-03-16 with total page 292 pages. Available in PDF, EPUB and Kindle. Book excerpt: Originally published: New York: John Wiley & Sons, Inc., 2001.
Book Synopsis Bayesian Data Analysis, Third Edition by : Andrew Gelman
Download or read book Bayesian Data Analysis, Third Edition written by Andrew Gelman and published by CRC Press. This book was released on 2013-11-01 with total page 677 pages. Available in PDF, EPUB and Kindle. Book excerpt: Now in its third edition, this classic book is widely considered the leading text on Bayesian methods, lauded for its accessible, practical approach to analyzing data and solving research problems. Bayesian Data Analysis, Third Edition continues to take an applied approach to analysis using up-to-date Bayesian methods. The authors—all leaders in the statistics community—introduce basic concepts from a data-analytic perspective before presenting advanced methods. Throughout the text, numerous worked examples drawn from real applications and research emphasize the use of Bayesian inference in practice. New to the Third Edition Four new chapters on nonparametric modeling Coverage of weakly informative priors and boundary-avoiding priors Updated discussion of cross-validation and predictive information criteria Improved convergence monitoring and effective sample size calculations for iterative simulation Presentations of Hamiltonian Monte Carlo, variational Bayes, and expectation propagation New and revised software code The book can be used in three different ways. For undergraduate students, it introduces Bayesian inference starting from first principles. For graduate students, the text presents effective current approaches to Bayesian modeling and computation in statistics and related fields. For researchers, it provides an assortment of Bayesian methods in applied statistics. Additional materials, including data sets used in the examples, solutions to selected exercises, and software instructions, are available on the book’s web page.
Author :National Academies of Sciences, Engineering, and Medicine Publisher :National Academies Press ISBN 13 :0309486165 Total Pages :257 pages Book Rating :4.3/5 (94 download)
Book Synopsis Reproducibility and Replicability in Science by : National Academies of Sciences, Engineering, and Medicine
Download or read book Reproducibility and Replicability in Science written by National Academies of Sciences, Engineering, and Medicine and published by National Academies Press. This book was released on 2019-10-20 with total page 257 pages. Available in PDF, EPUB and Kindle. Book excerpt: One of the pathways by which the scientific community confirms the validity of a new scientific discovery is by repeating the research that produced it. When a scientific effort fails to independently confirm the computations or results of a previous study, some fear that it may be a symptom of a lack of rigor in science, while others argue that such an observed inconsistency can be an important precursor to new discovery. Concerns about reproducibility and replicability have been expressed in both scientific and popular media. As these concerns came to light, Congress requested that the National Academies of Sciences, Engineering, and Medicine conduct a study to assess the extent of issues related to reproducibility and replicability and to offer recommendations for improving rigor and transparency in scientific research. Reproducibility and Replicability in Science defines reproducibility and replicability and examines the factors that may lead to non-reproducibility and non-replicability in research. Unlike the typical expectation of reproducibility between two computations, expectations about replicability are more nuanced, and in some cases a lack of replicability can aid the process of scientific discovery. This report provides recommendations to researchers, academic institutions, journals, and funders on steps they can take to improve reproducibility and replicability in science.
Book Synopsis Introduction to Bayesian Statistics by : William M. Bolstad
Download or read book Introduction to Bayesian Statistics written by William M. Bolstad and published by John Wiley & Sons. This book was released on 2016-09-02 with total page 805 pages. Available in PDF, EPUB and Kindle. Book excerpt: "...this edition is useful and effective in teaching Bayesian inference at both elementary and intermediate levels. It is a well-written book on elementary Bayesian inference, and the material is easily accessible. It is both concise and timely, and provides a good collection of overviews and reviews of important tools used in Bayesian statistical methods." There is a strong upsurge in the use of Bayesian methods in applied statistical analysis, yet most introductory statistics texts only present frequentist methods. Bayesian statistics has many important advantages that students should learn about if they are going into fields where statistics will be used. In this third Edition, four newly-added chapters address topics that reflect the rapid advances in the field of Bayesian statistics. The authors continue to provide a Bayesian treatment of introductory statistical topics, such as scientific data gathering, discrete random variables, robust Bayesian methods, and Bayesian approaches to inference for discrete random variables, binomial proportions, Poisson, and normal means, and simple linear regression. In addition, more advanced topics in the field are presented in four new chapters: Bayesian inference for a normal with unknown mean and variance; Bayesian inference for a Multivariate Normal mean vector; Bayesian inference for the Multiple Linear Regression Model; and Computational Bayesian Statistics including Markov Chain Monte Carlo. The inclusion of these topics will facilitate readers' ability to advance from a minimal understanding of Statistics to the ability to tackle topics in more applied, advanced level books. Minitab macros and R functions are available on the book's related website to assist with chapter exercises. Introduction to Bayesian Statistics, Third Edition also features: Topics including the Joint Likelihood function and inference using independent Jeffreys priors and join conjugate prior The cutting-edge topic of computational Bayesian Statistics in a new chapter, with a unique focus on Markov Chain Monte Carlo methods Exercises throughout the book that have been updated to reflect new applications and the latest software applications Detailed appendices that guide readers through the use of R and Minitab software for Bayesian analysis and Monte Carlo simulations, with all related macros available on the book's website Introduction to Bayesian Statistics, Third Edition is a textbook for upper-undergraduate or first-year graduate level courses on introductory statistics course with a Bayesian emphasis. It can also be used as a reference work for statisticians who require a working knowledge of Bayesian statistics.
Book Synopsis Bayesian Statistics for Social Scientists by : Lawrence D. Phillips
Download or read book Bayesian Statistics for Social Scientists written by Lawrence D. Phillips and published by . This book was released on 1974 with total page 472 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Data Analysis by : Devinderjit Sivia
Download or read book Data Analysis written by Devinderjit Sivia and published by OUP Oxford. This book was released on 2006-06-02 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt: One of the strengths of this book is the author's ability to motivate the use of Bayesian methods through simple yet effective examples. - Katie St. Clair MAA Reviews.
Book Synopsis Bayesian Data Analysis for the Behavioral and Neural Sciences by : Todd E. Hudson
Download or read book Bayesian Data Analysis for the Behavioral and Neural Sciences written by Todd E. Hudson and published by Cambridge University Press. This book was released on 2021-06-30 with total page 500 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook bypasses the need for advanced mathematics by providing in-text computer code, allowing students to explore Bayesian data analysis without the calculus background normally considered a prerequisite for this material. Now, students can use the best methods without needing advanced mathematical techniques. This approach goes beyond "frequentist" concepts of p-values and null hypothesis testing, using the full power of modern probability theory to solve real-world problems. The book offers a fully self-contained course, which demonstrates analysis techniques throughout with worked examples crafted specifically for students in the behavioral and neural sciences. The book presents two general algorithms that help students solve the measurement and model selection (also called "hypothesis testing") problems most frequently encountered in real-world applications.
Book Synopsis Doing Bayesian Data Analysis by : John Kruschke
Download or read book Doing Bayesian Data Analysis written by John Kruschke and published by Academic Press. This book was released on 2010-11-25 with total page 673 pages. Available in PDF, EPUB and Kindle. Book excerpt: There is an explosion of interest in Bayesian statistics, primarily because recently created computational methods have finally made Bayesian analysis tractable and accessible to a wide audience. Doing Bayesian Data Analysis, A Tutorial Introduction with R and BUGS, is for first year graduate students or advanced undergraduates and provides an accessible approach, as all mathematics is explained intuitively and with concrete examples. It assumes only algebra and ‘rusty’ calculus. Unlike other textbooks, this book begins with the basics, including essential concepts of probability and random sampling. The book gradually climbs all the way to advanced hierarchical modeling methods for realistic data. The text provides complete examples with the R programming language and BUGS software (both freeware), and begins with basic programming examples, working up gradually to complete programs for complex analyses and presentation graphics. These templates can be easily adapted for a large variety of students and their own research needs.The textbook bridges the students from their undergraduate training into modern Bayesian methods. Accessible, including the basics of essential concepts of probability and random sampling Examples with R programming language and BUGS software Comprehensive coverage of all scenarios addressed by non-bayesian textbooks- t-tests, analysis of variance (ANOVA) and comparisons in ANOVA, multiple regression, and chi-square (contingency table analysis). Coverage of experiment planning R and BUGS computer programming code on website Exercises have explicit purposes and guidelines for accomplishment
Book Synopsis The Nature of Scientific Evidence by : Mark L. Taper
Download or read book The Nature of Scientific Evidence written by Mark L. Taper and published by University of Chicago Press. This book was released on 2010-12-15 with total page 586 pages. Available in PDF, EPUB and Kindle. Book excerpt: An exploration of the statistical foundations of scientific inference, The Nature of Scientific Evidence asks what constitutes scientific evidence and whether scientific evidence can be quantified statistically. Mark Taper, Subhash Lele, and an esteemed group of contributors explore the relationships among hypotheses, models, data, and inference on which scientific progress rests in an attempt to develop a new quantitative framework for evidence. Informed by interdisciplinary discussions among scientists, philosophers, and statisticians, they propose a new "evidential" approach, which may be more in keeping with the scientific method. The Nature of Scientific Evidence persuasively argues that all scientists should care more about the fine points of statistical philosophy because therein lies the connection between theory and data. Though the book uses ecology as an exemplary science, the interdisciplinary evaluation of the use of statistics in empirical research will be of interest to any reader engaged in the quantification and evaluation of data.
Book Synopsis Experimentation for Engineers by : David Sweet
Download or read book Experimentation for Engineers written by David Sweet and published by Simon and Schuster. This book was released on 2023-03-21 with total page 246 pages. Available in PDF, EPUB and Kindle. Book excerpt: Optimize the performance of your systems with practical experiments used by engineers in the world’s most competitive industries. In Experimentation for Engineers: From A/B testing to Bayesian optimization you will learn how to: Design, run, and analyze an A/B test Break the "feedback loops" caused by periodic retraining of ML models Increase experimentation rate with multi-armed bandits Tune multiple parameters experimentally with Bayesian optimization Clearly define business metrics used for decision-making Identify and avoid the common pitfalls of experimentation Experimentation for Engineers: From A/B testing to Bayesian optimization is a toolbox of techniques for evaluating new features and fine-tuning parameters. You’ll start with a deep dive into methods like A/B testing, and then graduate to advanced techniques used to measure performance in industries such as finance and social media. Learn how to evaluate the changes you make to your system and ensure that your testing doesn’t undermine revenue or other business metrics. By the time you’re done, you’ll be able to seamlessly deploy experiments in production while avoiding common pitfalls. About the technology Does my software really work? Did my changes make things better or worse? Should I trade features for performance? Experimentation is the only way to answer questions like these. This unique book reveals sophisticated experimentation practices developed and proven in the world’s most competitive industries that will help you enhance machine learning systems, software applications, and quantitative trading solutions. About the book Experimentation for Engineers: From A/B testing to Bayesian optimization delivers a toolbox of processes for optimizing software systems. You’ll start by learning the limits of A/B testing, and then graduate to advanced experimentation strategies that take advantage of machine learning and probabilistic methods. The skills you’ll master in this practical guide will help you minimize the costs of experimentation and quickly reveal which approaches and features deliver the best business results. What's inside Design, run, and analyze an A/B test Break the “feedback loops” caused by periodic retraining of ML models Increase experimentation rate with multi-armed bandits Tune multiple parameters experimentally with Bayesian optimization About the reader For ML and software engineers looking to extract the most value from their systems. Examples in Python and NumPy. About the author David Sweet has worked as a quantitative trader at GETCO and a machine learning engineer at Instagram. He teaches in the AI and Data Science master's programs at Yeshiva University. Table of Contents 1 Optimizing systems by experiment 2 A/B testing: Evaluating a modification to your system 3 Multi-armed bandits: Maximizing business metrics while experimenting 4 Response surface methodology: Optimizing continuous parameters 5 Contextual bandits: Making targeted decisions 6 Bayesian optimization: Automating experimental optimization 7 Managing business metrics 8 Practical considerations
Book Synopsis Understanding Statistics and Experimental Design by : Michael H. Herzog
Download or read book Understanding Statistics and Experimental Design written by Michael H. Herzog and published by Springer. This book was released on 2019-08-13 with total page 146 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access textbook provides the background needed to correctly use, interpret and understand statistics and statistical data in diverse settings. Part I makes key concepts in statistics readily clear. Parts I and II give an overview of the most common tests (t-test, ANOVA, correlations) and work out their statistical principles. Part III provides insight into meta-statistics (statistics of statistics) and demonstrates why experiments often do not replicate. Finally, the textbook shows how complex statistics can be avoided by using clever experimental design. Both non-scientists and students in Biology, Biomedicine and Engineering will benefit from the book by learning the statistical basis of scientific claims and by discovering ways to evaluate the quality of scientific reports in academic journals and news outlets.
Book Synopsis Bayesian Reasoning in Data Analysis by : Giulio D'Agostini
Download or read book Bayesian Reasoning in Data Analysis written by Giulio D'Agostini and published by World Scientific. This book was released on 2003-06-13 with total page 352 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a multi-level introduction to Bayesian reasoning (as opposed to “conventional statistics”) and its applications to data analysis. The basic ideas of this “new” approach to the quantification of uncertainty are presented using examples from research and everyday life. Applications covered include: parametric inference; combination of results; treatment of uncertainty due to systematic errors and background; comparison of hypotheses; unfolding of experimental distributions; upper/lower bounds in frontier-type measurements. Approximate methods for routine use are derived and are shown often to coincide — under well-defined assumptions! — with “standard” methods, which can therefore be seen as special cases of the more general Bayesian methods. In dealing with uncertainty in measurements, modern metrological ideas are utilized, including the ISO classification of uncertainty into type A and type B. These are shown to fit well into the Bayesian framework. Contents: Critical Review and Outline of the Bayesian Alternative:Uncertainty in Physics and the Usual Methods of Handling ItA Probabilistic Theory of Measurement UncertaintyA Bayesian Primer:Subjective Probability and Bayes' TheoremProbability Distributions (A Concise Reminder)Bayesian Inference of Continuous QuantitiesGaussian LikelihoodCounting ExperimentsBypassing Bayes' Theorem for Routine ApplicationsBayesian UnfoldingFurther Comments, Examples and Applications:Miscellanea on General Issues in Probability and InferenceCombination of Experimental Results: A Closer LookAsymmetric Uncertainties and Nonlinear PropagationWhich Priors for Frontier Physics?Conclusion:Conclusions and Bibliography Readership: Graduate students and researchers interested in probability and statistics and their applications in science, particularly the evaluation of uncertainty in measurements. Keywords:Probability;Bayesian Statistics;Error Theory;Measurement Uncertainty;MetrologyReviews:“… statistics textbooks must take seriously the need to teach the foundations of statistical reasoning from the beginning … D'Agostini's new book does this admirably, building an edifice of Bayesian statistical reasoning in the physical sciences on solid foundations.”Journal of the American Statistical Association
Book Synopsis Likelihood Methods in Biology and Ecology by : Michael Brimacombe
Download or read book Likelihood Methods in Biology and Ecology written by Michael Brimacombe and published by CRC Press. This book was released on 2018-12-18 with total page 304 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book emphasizes the importance of the likelihood function in statistical theory and applications and discusses it in the context of biology and ecology. Bayesian and frequentist methods both use the likelihood function and provide differing but related insights. This is examined here both through review of basic methodology and also the integr
Download or read book Bayesian Brain written by Kenji Doya and published by MIT Press. This book was released on 2007 with total page 341 pages. Available in PDF, EPUB and Kindle. Book excerpt: Experimental and theoretical neuroscientists use Bayesian approaches to analyze the brain mechanisms of perception, decision-making, and motor control.
