Reticulate Phylogeny

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The Rye Genome

Author : M. Timothy Rabanus-Wallace
Publisher : Springer Nature
ISBN 13 : 3030833836
Total Pages : 251 pages
Book Rating : 4.0/5 (38 download)

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Book Synopsis The Rye Genome by : M. Timothy Rabanus-Wallace

Download or read book The Rye Genome written by M. Timothy Rabanus-Wallace and published by Springer Nature. This book was released on 2021-10-25 with total page 251 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book celebrates the dawn of the rye genomics era with concise, comprehensive, and accessible reviews on the current state of rye genomic research, written by experts in the field for students, researchers and growers. To most, rye is the key ingredient in a flavoursome bread or their favourite American whisky. To a farmer, rye is the remarkable grain that tolerates the harshest winters and the most unforgiving soils, befitting its legacy as the life-giving seed that fed the ancient civilisations of northern Eurasia. Since the mid-1900s, scientists have employed genetic approaches to better understand and utilize rye, but only since the technological advances of the mid-2010s has the possibility of addressing questions using rye genome assemblies become a reality. Alongside the secret of its unique survival abilities, rye genomics has accelerated research on a host of intriguing topics such as the complex history of rye’s domestication by humans, the nature of genes that switch fertility on and off, the function and origin of accessory chromosomes, and the evolution of selfish DNA.

Reticulate Evolution and Humans

Author : Michael L. Arnold
Publisher : Oxford University Press
ISBN 13 : 0199539588
Total Pages : 246 pages
Book Rating : 4.1/5 (995 download)

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Book Synopsis Reticulate Evolution and Humans by : Michael L. Arnold

Download or read book Reticulate Evolution and Humans written by Michael L. Arnold and published by Oxford University Press. This book was released on 2009 with total page 246 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes the important role that the transfer of genes between organisms has played during the origin and evolution of humans, and the evolution of organisms on which the human species depends for shelter, sustenance and companionship.

Phylogeny

Author : Mike Steel
Publisher : SIAM
ISBN 13 : 1611974488
Total Pages : 302 pages
Book Rating : 4.6/5 (119 download)

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Book Synopsis Phylogeny by : Mike Steel

Download or read book Phylogeny written by Mike Steel and published by SIAM. This book was released on 2016-09-29 with total page 302 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenetics is a topical and growing area of research. Phylogenies (phylogenetic trees and networks) allow biologists to study and graph evolutionary relationships between different species. These are also used to investigate other evolutionary processes?for example, how languages developed or how different strains of a virus (such as HIV or influenza) are related to each other.? This self-contained book addresses the underlying mathematical theory behind the reconstruction and analysis of phylogenies. The theory is grounded in classical concepts from discrete mathematics and probability theory as well as techniques from other branches of mathematics (algebra, topology, differential equations). The biological relevance of the results is highlighted throughout. The author supplies proofs of key classical theorems and includes results not covered in existing books, emphasizes relevant mathematical results derived over the past 20 years, and provides numerous exercises, examples, and figures.?

Parsimony, Phylogeny, and Genomics

Author : Victor A. Albert
Publisher : OUP Oxford
ISBN 13 : 0191524085
Total Pages : 238 pages
Book Rating : 4.1/5 (915 download)

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Book Synopsis Parsimony, Phylogeny, and Genomics by : Victor A. Albert

Download or read book Parsimony, Phylogeny, and Genomics written by Victor A. Albert and published by OUP Oxford. This book was released on 2005-03-24 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: Parsimony analysis (cladistics) has long been one of the most widely used methods of phylogenetic inference in the fields of systematic and evolutionary biology. Moreover it has mathematical attributes that lend itself for use with complex, genomic-scale data sets. This book demonstrates the potential that this powerful hierarchical data summarization method also has for both structural and functional comparative genomic research.

Reticulate Phylogeny

Author : Charles J. Cole
Publisher :
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (138 download)

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Book Synopsis Reticulate Phylogeny by : Charles J. Cole

Download or read book Reticulate Phylogeny written by Charles J. Cole and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Phylogeny and Evolution of the Angiosperms

Author : Douglas Soltis
Publisher : University of Chicago Press
ISBN 13 : 022644175X
Total Pages : 587 pages
Book Rating : 4.2/5 (264 download)

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Book Synopsis Phylogeny and Evolution of the Angiosperms by : Douglas Soltis

Download or read book Phylogeny and Evolution of the Angiosperms written by Douglas Soltis and published by University of Chicago Press. This book was released on 2018-01-24 with total page 587 pages. Available in PDF, EPUB and Kindle. Book excerpt: Although they are relative latecomers on the evolutionary scene, having emerged only 135?170 million years ago, angiosperms—or flowering plants—are the most diverse and species-rich group of seed-producing land plants, comprising more than 15,000 genera and over 350,000 species. Not only are they a model group for studying the patterns and processes of evolutionary diversification, they also play major roles in our economy, diet, and courtship rituals, producing our fruits, legumes, and grains, not to mention the flowers in our Valentine’s bouquets. They are also crucial ecologically, dominating most terrestrial and some aquatic landscapes. This fully revised edition of Phylogeny and Evolution of the Angiosperms provides an up-to-date, comprehensive overview of the evolution of and relationships among these vital plants. Incorporating molecular phylogenetics with morphological, chemical, developmental, and paleobotanical data, as well as presenting a more detailed account of early angiosperm fossils and important fossil information for each evolutionary branch of the angiosperms, the new edition integrates fossil evidence into a robust phylogenetic framework. Featuring a wealth of new color images, this highly synthetic work further reevaluates long-held evolutionary hypotheses related to flowering plants and will be an essential reference for botanists, plant systematists, and evolutionary biologists alike.

Reticulate Phylogeny

Author : Charles J. Cole
Publisher :
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (139 download)

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Book Synopsis Reticulate Phylogeny by : Charles J. Cole

Download or read book Reticulate Phylogeny written by Charles J. Cole and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Phylogenetics

Author : Ibrokhim Y. Abdurakhmonov
Publisher : BoD – Books on Demand
ISBN 13 : 953513499X
Total Pages : 122 pages
Book Rating : 4.5/5 (351 download)

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Book Synopsis Phylogenetics by : Ibrokhim Y. Abdurakhmonov

Download or read book Phylogenetics written by Ibrokhim Y. Abdurakhmonov and published by BoD – Books on Demand. This book was released on 2017-09-06 with total page 122 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenetics aims to study the evolutionary relatedness of living organisms in our planet. Its application is extended to the key areas such as evolution, classification and taxonomy of living organisms; ecology, diversity, and conservation biology of agrobiocenosis; monitoring of pathogen spread, outbreaks and source of transmissions, forensic analyses, etc. Historically, phylogenetics studies were prevalently based on morphological features of species that helped to classify the 'Tree of Life' on Earth. Modern phylogenetics studies, however, rely more heavily on DNA sequences. In this Phylogenetics book, we aimed to present readers the latest developments in phylogenetics studies that highlight multi-kingdom systems, reticulated evolution and conservation biology of living organisms as well as 'omics'-based phylogenetics advances.

Reticulate Phylogeny: A New Tetraploid Parthenogenetic Whiptail Lizard Derived from Hybridization Among Four Bisexual Ancestral Species of Aspidoscelis (Reptilia: Squamata: Teiidae)

Download Reticulate Phylogeny: A New Tetraploid Parthenogenetic Whiptail Lizard Derived from Hybridization Among Four Bisexual Ancestral Species of Aspidoscelis (Reptilia: Squamata: Teiidae) PDF Online Free

Author : Charles James Cole
Publisher :
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (14 download)

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Book Synopsis Reticulate Phylogeny: A New Tetraploid Parthenogenetic Whiptail Lizard Derived from Hybridization Among Four Bisexual Ancestral Species of Aspidoscelis (Reptilia: Squamata: Teiidae) by : Charles James Cole

Download or read book Reticulate Phylogeny: A New Tetraploid Parthenogenetic Whiptail Lizard Derived from Hybridization Among Four Bisexual Ancestral Species of Aspidoscelis (Reptilia: Squamata: Teiidae) written by Charles James Cole and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Phylogeny

Author : Mike Steel
Publisher : SIAM
ISBN 13 : 161197447X
Total Pages : 302 pages
Book Rating : 4.6/5 (119 download)

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Book Synopsis Phylogeny by : Mike Steel

Download or read book Phylogeny written by Mike Steel and published by SIAM. This book was released on 2016-09-29 with total page 302 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenetics is a topical and growing area of research. Phylogenies (phylogenetic trees and networks) allow biologists to study and graph evolutionary relationships between different species. These are also used to investigate other evolutionary processes?for example, how languages developed or how different strains of a virus (such as HIV or influenza) are related to each other. This self-contained book addresses the underlying mathematical theory behind the reconstruction and analysis of phylogenies. The theory is grounded in classical concepts from discrete mathematics and probability theory as well as techniques from other branches of mathematics (algebra, topology, differential equations). The biological relevance of the results is highlighted throughout. The author supplies proofs of key classical theorems and includes results not covered in existing books, emphasizes relevant mathematical results derived over the past 20 years, and provides numerous exercises, examples, and figures.

Reticulate Evolution

Author : Nathalie Gontier
Publisher : Springer
ISBN 13 : 3319163450
Total Pages : 345 pages
Book Rating : 4.3/5 (191 download)

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Book Synopsis Reticulate Evolution by : Nathalie Gontier

Download or read book Reticulate Evolution written by Nathalie Gontier and published by Springer. This book was released on 2015-07-09 with total page 345 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written for non-experts, this volume introduces the mechanisms that underlie reticulate evolution. Chapters are either accompanied with glossaries that explain new terminology or timelines that position pioneering scholars and their major discoveries in their historical contexts. The contributing authors outline the history and original context of discovery of symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infectious heredity. By applying key insights from the areas of molecular (phylo)genetics, microbiology, virology, ecology, systematics, immunology, epidemiology and computational science, they demonstrate how reticulate evolution impacts successful survival, fitness and speciation. Reticulate evolution brings forth a challenge to the standard Neo-Darwinian framework, which defines life as the outcome of bifurcation and ramification patterns brought forth by the vertical mechanism of natural selection. Reticulate evolution puts forward a pattern in the tree of life that is characterized by horizontal mergings and lineage crossings induced by symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infective heredity, making the “tree of life” look more like a “web of life.” On an epistemological level, the various means by which hereditary material can be transferred horizontally challenges our classic notions of units and levels of evolution, fitness, modes of transmission, linearity, communities and biological individuality. The case studies presented examine topics including the origin of the eukaryotic cell and its organelles through symbiogenesis; the origin of algae through primary and secondary symbiosis and dinoflagellates through tertiary symbiosis; the superorganism and holobiont as units of evolution; how endosymbiosis induces speciation in multicellular life forms; transferrable and non-transferrable plasmids and how they symbiotically interact with their host; the means by which pro- and eukaryotic organisms transfer genes laterally (bacterial transformation, transduction and conjugation as well as transposons and other mobile genetic elements); hybridization and divergence with gene flow in sexually-reproducing individuals; current (human) microbiome and viriome studies that impact our knowledge concerning the evolution of organismal health and acquired immunity; and how symbiosis and symbiogenesis can be modelled in computational evolution.

Bioinformatics

Author : Dilip K Arora
Publisher : Elsevier
ISBN 13 : 0080463703
Total Pages : 351 pages
Book Rating : 4.0/5 (84 download)

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Book Synopsis Bioinformatics by : Dilip K Arora

Download or read book Bioinformatics written by Dilip K Arora and published by Elsevier. This book was released on 2006-08-15 with total page 351 pages. Available in PDF, EPUB and Kindle. Book excerpt: The advances in genomic technologies, such as microarrays and high throughput sequencing,have expanded the realm of possibilities for capturing data and analyzing it using automatedcomputer driven bioinformatics tools. With the completion of the sequencing of genomes ofhuman and several model organisms, a quest for scientific discoveries being fueled byintegrative and multidimensional techniques in mathematics and computational sciences. Inthis volume, leading researchers and experts have provided an overview of significantconcepts from biological, mathematical, and computational perspectives. It provides a high level view of fungal genomic data integration and annotation, classification of proteins and identification of vaccine targets, identification of secretome or secreted proteins in fungal genomes, as well as tools for analyzing microarray expressionprofiles. Provides a survey of theoretical underpinnings on the technological tools and applications Discusses the tools utilized for the annotation of fungal genomes and addresses issues related to automated annotation generation in a high throughput biotechnology environment Describes the applications of the concepts and methodologies presented throughout the book

Phylogenetics

Author : Charles Semple
Publisher : Oxford University Press on Demand
ISBN 13 : 9780198509424
Total Pages : 258 pages
Book Rating : 4.5/5 (94 download)

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Book Synopsis Phylogenetics by : Charles Semple

Download or read book Phylogenetics written by Charles Semple and published by Oxford University Press on Demand. This book was released on 2003 with total page 258 pages. Available in PDF, EPUB and Kindle. Book excerpt: 'Phylogenetics' is the reconstruction and analysis of phylogenetic (evolutionary) trees and networks based on inherited characteristics. It is a flourishing area of intereaction between mathematics, statistics, computer science and biology.The main role of phylogenetic techniques lies in evolutionary biology, where it is used to infer historical relationships between species. However, the methods are also relevant to a diverse range of fields including epidemiology, ecology, medicine, as well as linguistics and cognitive psychologyThis graduate-level book, based on the authors lectures at The University of Canterbury, New Zealand, focuses on the mathematical aspects of phylogenetics. It brings together the central results of the field (providing proofs of the main theorem), outlines their biological significance,and indicateshow algorithms may be derived. The presentation is self-contained and relies on discrete mathematics with some probability theory. A set of exercises and at least one specialist topic ends each chapter.This book is intended for biologists interested in the mathematical theory behind phylogenetic methods, and for mathematicians, statisticians, and computer scientists eager to learn about this emerging area of discrete mathematics.'Phylogenetics' in the 24th volume in the Oxford Lecture Series in Mathematics and its Applications. This series contains short books suitable for graduate students and researchers who want a well-written account of mathematics that is fundamental to current to research. The series emphasises futuredirections of research and focuses on genuine applications of mathematics to finance, engineering and the physical and biological sciences.

Reticulate Phylogeny

Author : Charles J. Cole
Publisher :
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (139 download)

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Book Synopsis Reticulate Phylogeny by : Charles J. Cole

Download or read book Reticulate Phylogeny written by Charles J. Cole and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Bayesian Phylogenetics

Author : Ming-Hui Chen
Publisher : CRC Press
ISBN 13 : 1466500794
Total Pages : 398 pages
Book Rating : 4.4/5 (665 download)

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Book Synopsis Bayesian Phylogenetics by : Ming-Hui Chen

Download or read book Bayesian Phylogenetics written by Ming-Hui Chen and published by CRC Press. This book was released on 2014-05-27 with total page 398 pages. Available in PDF, EPUB and Kindle. Book excerpt: Offering a rich diversity of models, Bayesian phylogenetics allows evolutionary biologists, systematists, ecologists, and epidemiologists to obtain answers to very detailed phylogenetic questions. Suitable for graduate-level researchers in statistics and biology, Bayesian Phylogenetics: Methods, Algorithms, and Applications presents a snapshot of current trends in Bayesian phylogenetic research. Encouraging interdisciplinary research, this book introduces state-of-the-art phylogenetics to the Bayesian statistical community and, likewise, presents state-of-the-art Bayesian statistics to the phylogenetics community. The book emphasizes model selection, reflecting recent interest in accurately estimating marginal likelihoods. It also discusses new approaches to improve mixing in Bayesian phylogenetic analyses in which the tree topology varies. In addition, the book covers divergence time estimation, biologically realistic models, and the burgeoning interface between phylogenetics and population genetics.

Reconstructing the Tree of Life

Author : Trevor R. Hodkinson
Publisher : CRC Press
ISBN 13 : 1420009532
Total Pages : 374 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis Reconstructing the Tree of Life by : Trevor R. Hodkinson

Download or read book Reconstructing the Tree of Life written by Trevor R. Hodkinson and published by CRC Press. This book was released on 2006-12-26 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: To document the world's diversity of species and reconstruct the tree of life we need to undertake some simple but mountainous tasks. Most importantly, we need to tackle species rich groups. We need to collect, name, and classify them, and then position them on the tree of life. We need to do this systematically across all groups of organisms and b

Topological Data Analysis for Genomics and Evolution

Author : Raul Rabadan
Publisher : Cambridge University Press
ISBN 13 : 1108757499
Total Pages : 522 pages
Book Rating : 4.1/5 (87 download)

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Book Synopsis Topological Data Analysis for Genomics and Evolution by : Raul Rabadan

Download or read book Topological Data Analysis for Genomics and Evolution written by Raul Rabadan and published by Cambridge University Press. This book was released on 2019-12-19 with total page 522 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biology has entered the age of Big Data. A technical revolution has transformed the field, and extracting meaningful information from large biological data sets is now a central methodological challenge. Algebraic topology is a well-established branch of pure mathematics that studies qualitative descriptors of the shape of geometric objects. It aims to reduce comparisons of shape to a comparison of algebraic invariants, such as numbers, which are typically easier to work with. Topological data analysis is a rapidly developing subfield that leverages the tools of algebraic topology to provide robust multiscale analysis of data sets. This book introduces the central ideas and techniques of topological data analysis and its specific applications to biology, including the evolution of viruses, bacteria and humans, genomics of cancer, and single cell characterization of developmental processes. Bridging two disciplines, the book is for researchers and graduate students in genomics and evolutionary biology as well as mathematicians interested in applied topology.