Recent Advances In Phylogenetics

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Recent Advances in Phylogenetics

Author : Zubaida Yousaf
Publisher : BoD – Books on Demand
ISBN 13 : 1789858895
Total Pages : 82 pages
Book Rating : 4.7/5 (898 download)

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Book Synopsis Recent Advances in Phylogenetics by : Zubaida Yousaf

Download or read book Recent Advances in Phylogenetics written by Zubaida Yousaf and published by BoD – Books on Demand. This book was released on 2019-04-10 with total page 82 pages. Available in PDF, EPUB and Kindle. Book excerpt: This edited volume is a collection of reviewed and relevant research chapters concerning developments within the field of phylogenetics. The book includes scholarly contributions by various authors, edited by experts pertinent to the field of phylogenetics. Each contribution comes as a separate chapter but is directly related to the book's topics and objectives. The target audience comprises scholars and specialists in the field.

Phylogenetics

Author : E. O. Wiley
Publisher : John Wiley & Sons
ISBN 13 : 1118017870
Total Pages : 444 pages
Book Rating : 4.1/5 (18 download)

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Book Synopsis Phylogenetics by : E. O. Wiley

Download or read book Phylogenetics written by E. O. Wiley and published by John Wiley & Sons. This book was released on 2011-10-11 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: The long-awaited revision of the industry standard on phylogenetics Since the publication of the first edition of this landmark volume more than twenty-five years ago, phylogenetic systematics has taken its place as the dominant paradigm of systematic biology. It has profoundly influenced the way scientists study evolution, and has seen many theoretical and technical advances as the field has continued to grow. It goes almost without saying that the next twenty-five years of phylogenetic research will prove as fascinating as the first, with many exciting developments yet to come. This new edition of Phylogenetics captures the very essence of this rapidly evolving discipline. Written for the practicing systematist and phylogeneticist, it addresses both the philosophical and technical issues of the field, as well as surveys general practices in taxonomy. Major sections of the book deal with the nature of species and higher taxa, homology and characters, trees and tree graphs, and biogeography—the purpose being to develop biologically relevant species, character, tree, and biogeographic concepts that can be applied fruitfully to phylogenetics. The book then turns its focus to phylogenetic trees, including an in-depth guide to tree-building algorithms. Additional coverage includes: Parsimony and parsimony analysis Parametric phylogenetics including maximum likelihood and Bayesian approaches Phylogenetic classification Critiques of evolutionary taxonomy, phenetics, and transformed cladistics Specimen selection, field collecting, and curating Systematic publication and the rules of nomenclature Providing a thorough synthesis of the field, this important update to Phylogenetics is essential for students and researchers in the areas of evolutionary biology, molecular evolution, genetics and evolutionary genetics, paleontology, physical anthropology, and zoology.

Molecular Evolution and Phylogenetics

Author : Masatoshi Nei
Publisher : Oxford University Press
ISBN 13 : 0199881227
Total Pages : 444 pages
Book Rating : 4.1/5 (998 download)

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Book Synopsis Molecular Evolution and Phylogenetics by : Masatoshi Nei

Download or read book Molecular Evolution and Phylogenetics written by Masatoshi Nei and published by Oxford University Press. This book was released on 2000-07-27 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: During the last ten years, remarkable progress has occurred in the study of molecular evolution. Among the most important factors that are responsible for this progress are the development of new statistical methods and advances in computational technology. In particular, phylogenetic analysis of DNA or protein sequences has become a powerful tool for studying molecular evolution. Along with this developing technology, the application of the new statistical and computational methods has become more complicated and there is no comprehensive volume that treats these methods in depth. Molecular Evolution and Phylogenetics fills this gap and present various statistical methods that are easily accessible to general biologists as well as biochemists, bioinformatists and graduate students. The text covers measurement of sequence divergence, construction of phylogenetic trees, statistical tests for detection of positive Darwinian selection, inference of ancestral amino acid sequences, construction of linearized trees, and analysis of allele frequency data. Emphasis is given to practical methods of data analysis, and methods can be learned by working through numerical examples using the computer program MEGA2 that is provided.

Batch Effects and Noise in Microarray Experiments

Author : Andreas Scherer
Publisher : John Wiley & Sons
ISBN 13 : 9780470685990
Total Pages : 272 pages
Book Rating : 4.6/5 (859 download)

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Book Synopsis Batch Effects and Noise in Microarray Experiments by : Andreas Scherer

Download or read book Batch Effects and Noise in Microarray Experiments written by Andreas Scherer and published by John Wiley & Sons. This book was released on 2009-11-03 with total page 272 pages. Available in PDF, EPUB and Kindle. Book excerpt: Batch Effects and Noise in Microarray Experiments: Sources and Solutions looks at the issue of technical noise and batch effects in microarray studies and illustrates how to alleviate such factors whilst interpreting the relevant biological information. Each chapter focuses on sources of noise and batch effects before starting an experiment, with examples of statistical methods for detecting, measuring, and managing batch effects within and across datasets provided online. Throughout the book the importance of standardization and the value of standard operating procedures in the development of genomics biomarkers is emphasized. Key Features: A thorough introduction to Batch Effects and Noise in Microrarray Experiments. A unique compilation of review and research articles on handling of batch effects and technical and biological noise in microarray data. An extensive overview of current standardization initiatives. All datasets and methods used in the chapters, as well as colour images, are available on www.the-batch-effect-book.org, so that the data can be reproduced. An exciting compilation of state-of-the-art review chapters and latest research results, which will benefit all those involved in the planning, execution, and analysis of gene expression studies.

The Evolution of Phylogenetic Systematics

Author : Andrew Hamilton
Publisher : Univ of California Press
ISBN 13 : 0520956753
Total Pages : 320 pages
Book Rating : 4.5/5 (29 download)

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Book Synopsis The Evolution of Phylogenetic Systematics by : Andrew Hamilton

Download or read book The Evolution of Phylogenetic Systematics written by Andrew Hamilton and published by Univ of California Press. This book was released on 2013-11-09 with total page 320 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Evolution of Phylogenetic Systematics aims to make sense of the rise of phylogenetic systematics—its methods, its objects of study, and its theoretical foundations—with contributions from historians, philosophers, and biologists. This volume articulates an intellectual agenda for the study of systematics and taxonomy in a way that connects classification with larger historical themes in the biological sciences, including morphology, experimental and observational approaches, evolution, biogeography, debates over form and function, character transformation, development, and biodiversity. It aims to provide frameworks for answering the question: how did systematics become phylogenetic?

Early Events in Monocot Evolution

Author : Paul Wilkin
Publisher : Cambridge University Press
ISBN 13 : 1107244609
Total Pages : 381 pages
Book Rating : 4.1/5 (72 download)

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Book Synopsis Early Events in Monocot Evolution by : Paul Wilkin

Download or read book Early Events in Monocot Evolution written by Paul Wilkin and published by Cambridge University Press. This book was released on 2013-05-30 with total page 381 pages. Available in PDF, EPUB and Kindle. Book excerpt: Tracing the evolution of one of the most ancient major branches of flowering plants, this is a wide-ranging survey of state-of-the-art research on the early clades of the monocot phylogenetic tree. It explores a series of broad but linked themes, providing for the first time a detailed and coherent view of the taxa of the early monocot lineages, how they diversified and their importance in monocots as a whole. Featuring contributions from leaders in the field, the chapters trace the evolution of the monocots from largely aquatic ancestors. Topics covered include the rapidly advancing field of monocot fossils, aquatic adaptations in pollen and anther structure and pollination strategies and floral developmental morphology. The book also presents a new plastid sequence analysis of early monocots and a review of monocot phylogeny as a whole, placing in an evolutionary context a plant group of major ecological, economic and horticultural importance.

Biodiversity Conservation and Phylogenetic Systematics

Author : Roseli Pellens
Publisher : Springer
ISBN 13 : 3319224611
Total Pages : 396 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Biodiversity Conservation and Phylogenetic Systematics by : Roseli Pellens

Download or read book Biodiversity Conservation and Phylogenetic Systematics written by Roseli Pellens and published by Springer. This book was released on 2016-02-24 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is about phylogenetic diversity as an approach to reduce biodiversity losses in this period of mass extinction. Chapters in the first section deal with questions such as the way we value phylogenetic diversity among other criteria for biodiversity conservation; the choice of measures; the loss of phylogenetic diversity with extinction; the importance of organisms that are deeply branched in the tree of life, and the role of relict species. The second section is composed by contributions exploring methodological aspects, such as how to deal with abundance, sampling effort, or conflicting trees in analysis of phylogenetic diversity. The last section is devoted to applications, showing how phylogenetic diversity can be integrated in systematic conservation planning, in EDGE and HEDGE evaluations. This wide coverage makes the book a reference for academics, policy makers and stakeholders dealing with biodiversity conservation.

Parasite Diversity and Diversification

Author : Serge Morand
Publisher : Cambridge University Press
ISBN 13 : 1107037654
Total Pages : 503 pages
Book Rating : 4.1/5 (7 download)

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Book Synopsis Parasite Diversity and Diversification by : Serge Morand

Download or read book Parasite Diversity and Diversification written by Serge Morand and published by Cambridge University Press. This book was released on 2015-02-26 with total page 503 pages. Available in PDF, EPUB and Kindle. Book excerpt: By joining phylogenetics and evolutionary ecology, this book explores the patterns of parasite diversity while revealing diversification processes.

Molecular Evolution

Author : Roderick D.M. Page
Publisher : John Wiley & Sons
ISBN 13 : 1444313363
Total Pages : 352 pages
Book Rating : 4.4/5 (443 download)

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Book Synopsis Molecular Evolution by : Roderick D.M. Page

Download or read book Molecular Evolution written by Roderick D.M. Page and published by John Wiley & Sons. This book was released on 2009-07-14 with total page 352 pages. Available in PDF, EPUB and Kindle. Book excerpt: The study of evolution at the molecular level has given the subject of evolutionary biology a new significance. Phylogenetic 'trees' of gene sequences are a powerful tool for recovering evolutionary relationships among species, and can be used to answer a broad range of evolutionary and ecological questions. They are also beginning to permeate the medical sciences. In this book, the authors approach the study of molecular evolution with the phylogenetic tree as a central metaphor. This will equip students and professionals with the ability to see both the evolutionary relevance of molecular data, and the significance evolutionary theory has for molecular studies. The book is accessible yet sufficiently detailed and explicit so that the student can learn the mechanics of the procedures discussed. The book is intended for senior undergraduate and graduate students taking courses in molecular evolution/phylogenetic reconstruction. It will also be a useful supplement for students taking wider courses in evolution, as well as a valuable resource for professionals. First student textbook of phylogenetic reconstruction which uses the tree as a central metaphor of evolution. Chapter summaries and annotated suggestions for further reading. Worked examples facilitate understanding of some of the more complex issues. Emphasis on clarity and accessibility.

Major Patterns in Vertebrate Evolution

Author : Max Hecht
Publisher : Springer Science & Business Media
ISBN 13 : 1468488511
Total Pages : 901 pages
Book Rating : 4.4/5 (684 download)

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Book Synopsis Major Patterns in Vertebrate Evolution by : Max Hecht

Download or read book Major Patterns in Vertebrate Evolution written by Max Hecht and published by Springer Science & Business Media. This book was released on 2013-11-11 with total page 901 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is the result of a NATO Advanced Study Institute held in England at Kingswood Hall of Residence, Royal Holloway College (London University), Surrey, during the last two weeks of July, 1976. The ASI was organized within the guide lines laid down by the Scientific Affairs Division of the North Atlantic Treaty Organization. During the past two decades, significant advances have been made in our understanding of vertebrate evolution. The purpose of the Institute was to present the current status of our know ledge of vertebrate evolution above the species level. Since the subject matter was obviously too broad to be covered adequately in the limited time available, selected topics, problems, and areas which are applicable to vertebrate zoology as a whole were reviewed. The program was divided into three areas: (1) the theory and methodology of phyletic inference and approaches to the an alysis of macroevolutionary trends as applied to vertebrates; (2) the application of these methodological principles and an alytical processes to different groups and structures, particular ly in anatomy and paleontology; (3) the application of these re sults to classification. The basic principles considered in the first area were outlined in lectures covering the problems of character analysis, functional morphology, karyological evidence, biochemical evidence, morphogenesis, and biogeography.

Decapod Crustacean Phylogenetics

Author : Joel W. Martin
Publisher : CRC Press
ISBN 13 : 1420092596
Total Pages : 634 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis Decapod Crustacean Phylogenetics by : Joel W. Martin

Download or read book Decapod Crustacean Phylogenetics written by Joel W. Martin and published by CRC Press. This book was released on 2016-04-19 with total page 634 pages. Available in PDF, EPUB and Kindle. Book excerpt: Decapod crustaceans are of tremendous interest and importance evolutionarily, ecologically, and economically. There is no shortage of publications reflecting the wide variety of ideas and hypotheses concerning decapod phylogeny, but until recently, the world's leading decapodologists had never assembled to elucidate and discuss relationships among

Bioinformatics and Phylogenetics

Author : Tandy Warnow
Publisher : Springer
ISBN 13 : 3030108376
Total Pages : 426 pages
Book Rating : 4.0/5 (31 download)

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Book Synopsis Bioinformatics and Phylogenetics by : Tandy Warnow

Download or read book Bioinformatics and Phylogenetics written by Tandy Warnow and published by Springer. This book was released on 2019-04-08 with total page 426 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret’s research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics approaches; examines problems in phylogenetic networks, including questions relating to discrete mathematics, and issues of statistical estimation; highlights how evolution can provide a framework within which to understand comparative and functional genomics; provides an introduction to Integer Linear Programming and its use in computational biology, including its use for solving the Traveling Salesman Problem. Offering an invaluable source of insights for computer scientists, applied mathematicians, and statisticians, this illuminating volume will also prove useful for graduate courses on computational biology and bioinformatics.

Mathematics of Evolution and Phylogeny

Author : Olivier Gascuel
Publisher : OUP Oxford
ISBN 13 : 9780191513732
Total Pages : 444 pages
Book Rating : 4.5/5 (137 download)

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Book Synopsis Mathematics of Evolution and Phylogeny by : Olivier Gascuel

Download or read book Mathematics of Evolution and Phylogeny written by Olivier Gascuel and published by OUP Oxford. This book was released on 2005-02-24 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book considers evolution at different scales: sequences, genes, gene families, organelles, genomes and species. The focus is on the mathematical and computational tools and concepts, which form an essential basis of evolutionary studies, indicate their limitations, and give them orientation. Recent years have witnessed rapid progress in the mathematics of evolution and phylogeny, with models and methods becoming more realistic, powerful, and complex. Aimed at graduates and researchers in phylogenetics, mathematicians, computer scientists and biologists, and including chapters by leading scientists: A. Bergeron, D. Bertrand, D. Bryant, R. Desper, O. Elemento, N. El-Mabrouk, N. Galtier, O. Gascuel, M. Hendy, S. Holmes, K. Huber, A. Meade, J. Mixtacki, B. Moret, E. Mossel, V. Moulton, M. Pagel, M.-A. Poursat, D. Sankoff, M. Steel, J. Stoye, J. Tang, L.-S. Wang, T. Warnow, Z. Yang, this book of contributed chapters explains the basis and covers the recent results in this highly topical area.

Bayesian Phylogenetics

Author : Ming-Hui Chen
Publisher : CRC Press
ISBN 13 : 1466500794
Total Pages : 398 pages
Book Rating : 4.4/5 (665 download)

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Book Synopsis Bayesian Phylogenetics by : Ming-Hui Chen

Download or read book Bayesian Phylogenetics written by Ming-Hui Chen and published by CRC Press. This book was released on 2014-05-27 with total page 398 pages. Available in PDF, EPUB and Kindle. Book excerpt: Offering a rich diversity of models, Bayesian phylogenetics allows evolutionary biologists, systematists, ecologists, and epidemiologists to obtain answers to very detailed phylogenetic questions. Suitable for graduate-level researchers in statistics and biology, Bayesian Phylogenetics: Methods, Algorithms, and Applications presents a snapshot of current trends in Bayesian phylogenetic research. Encouraging interdisciplinary research, this book introduces state-of-the-art phylogenetics to the Bayesian statistical community and, likewise, presents state-of-the-art Bayesian statistics to the phylogenetics community. The book emphasizes model selection, reflecting recent interest in accurately estimating marginal likelihoods. It also discusses new approaches to improve mixing in Bayesian phylogenetic analyses in which the tree topology varies. In addition, the book covers divergence time estimation, biologically realistic models, and the burgeoning interface between phylogenetics and population genetics.

Molecular Evolutionary Genetics

Author : Masatoshi Nei
Publisher : Columbia University Press
ISBN 13 : 9780231063210
Total Pages : 526 pages
Book Rating : 4.0/5 (632 download)

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Book Synopsis Molecular Evolutionary Genetics by : Masatoshi Nei

Download or read book Molecular Evolutionary Genetics written by Masatoshi Nei and published by Columbia University Press. This book was released on 1987 with total page 526 pages. Available in PDF, EPUB and Kindle. Book excerpt: -- "The Scientist"

Inferring Phylogenies

Author : Joseph Felsenstein
Publisher : Sinauer Associates Incorporated
ISBN 13 : 9780878931774
Total Pages : 664 pages
Book Rating : 4.9/5 (317 download)

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Book Synopsis Inferring Phylogenies by : Joseph Felsenstein

Download or read book Inferring Phylogenies written by Joseph Felsenstein and published by Sinauer Associates Incorporated. This book was released on 2004-01 with total page 664 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenies, or evolutionary trees, are the basic structures necessary to think about and analyze differences between species. Statistical, computational, and algorithmic work in this field has been ongoing for four decades now, and there have been great advances in understanding. Yet no book has summarized this work. Inferring Phylogenies does just that in a single, compact volume. Phylogenies are inferred with various kinds of data. This book concentrates on some of the central ones: discretely coded characters, molecular sequences, gene frequencies, and quantitative traits. Also covered are restriction sites, RAPDs, and microsatellites.

The Future of Phylogenetic Systematics

Author : David Williams
Publisher : Cambridge University Press
ISBN 13 : 1316688186
Total Pages : 509 pages
Book Rating : 4.3/5 (166 download)

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Book Synopsis The Future of Phylogenetic Systematics by : David Williams

Download or read book The Future of Phylogenetic Systematics written by David Williams and published by Cambridge University Press. This book was released on 2016-07-21 with total page 509 pages. Available in PDF, EPUB and Kindle. Book excerpt: Willi Hennig (1913–76), founder of phylogenetic systematics, revolutionised our understanding of the relationships among species and their natural classification. An expert on Diptera and fossil insects, Hennig's ideas were applicable to all organisms. He wrote about the science of taxonomy or systematics, refining and promoting discussion of the precise meaning of the term 'relationship', the nature of systematic evidence, and how those matters impinge on a precise understanding of monophyly, paraphyly, and polyphyly. Hennig's contributions are relevant today and are a platform for the future. This book focuses on the intellectual aspects of Hennig's work and gives dimension to the future of the subject in relation to Hennig's foundational contributions to the field of phylogenetic systematics. Suitable for graduate students and academic researchers, this book will also appeal to philosophers and historians interested in the legacy of Willi Hennig.