Open Source Applied Bioimage Informatics

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Open Source Applied Bioimage Informatics

Author : Kevin William Eliceiri
Publisher :
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (1 download)

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Book Synopsis Open Source Applied Bioimage Informatics by : Kevin William Eliceiri

Download or read book Open Source Applied Bioimage Informatics written by Kevin William Eliceiri and published by . This book was released on 2016 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological imaging has greatly advanced over the last fifty years with the now unprecedented ability to track biological phenomena in high resolution in physiologically relevant conditions over time and in space. As these imaging technologies mature and become main stream tools for the bench biologist there is great need for improved software tools that drive the informatics workflow of the imaging process from acquisition and image analysis to visualization and dissemination. To best meet the workflow challenges, these tools need to be freely available, open source, and transparent in their development and deployment. In particular it is clear that given the complexity, and heterogeneity of the modern image dataset, there cannot be a single software solution. Different imaging processing and visualization approaches need access not only to the data but also to each other. There needs to be compatibility not only in file import and export but interoperability in preserving and communicating what was done to the image. There is a great opportunity in achieving this interoperability, tools that can talk to each other not only enable new biological discovery but also efficiencies in sharing code and in many cases more precise workflows. This dissertation present efforts towards interoperability in the ImageJ2 consortiums. This consortiums are actively developing key software libraries like SciJava and SCIFIO that are utilized in dozens of software applications to parse and visualize biological image data, to the developmental benefit of not only of the applications but the libraries themselves. We are developing a complete, open source system for handling biomedical images, including image acquisition, data storage, metadata (experimental data associated with an image), visualization, analysis, annotation, and database interconnectivity. We are adding support for multidimensional file structures such as fluorescence lifetime imaging and improving performance for handling large files. We are developing new approaches for analyzing the tumor microenvironment with a emphasis on measuring collagen. We are developing ImageJ2 as the next generation version of ImageJ with an emphasis on performance for large multidimensional files and interoperability. ImageJ2 is a new version of ImageJ seeking to strengthen both the software and its community. Internally, it is a total redesign of ImageJ, but it is backwards compatible with ImageJ 1.x via a "legacy layer" and features a user interface closely modeled after the original. Under the hood, ImageJ2 completely isolates the image processing logic from the graphical user interface (UI), allowing ImageJ2 plugins to be used in many contexts, including headless in the cloud or on a server such as OMERO, or from within another application such as CellProfiler. ImageJ2 has an N-dimensional data model driven by the powerful ImgLib2 library, which supports image data expressed in an extensible set of numeric and non-numeric types, and accessed from an extensible set of data sources. ImageJ2 is driven by a state-of-the-art, collaborative development process, including version control, unit testing, automated builds via a continuous integration system, a bug tracker and more. We are collaborating closely with related projects including Fiji, Bio-Formats and OMERO, and are striving to deliver a coherent software stack reusable throughout the life sciences community and beyond. The result is well-designed, community-driven software accessible to users yet powerful enough for programmers

Focus on Bio-Image Informatics

Author : Winnok H. De Vos
Publisher : Springer
ISBN 13 : 3319285491
Total Pages : 272 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Focus on Bio-Image Informatics by : Winnok H. De Vos

Download or read book Focus on Bio-Image Informatics written by Winnok H. De Vos and published by Springer. This book was released on 2016-05-20 with total page 272 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume of Advances Anatomy Embryology and Cell Biology focuses on the emerging field of bio-image informatics, presenting novel and exciting ways of handling and interpreting large image data sets. A collection of focused reviews written by key players in the field highlights the major directions and provides an excellent reference work for both young and experienced researchers.

Microscope Image Processing

Author : Fatima Merchant
Publisher : Academic Press
ISBN 13 : 0128210508
Total Pages : 528 pages
Book Rating : 4.1/5 (282 download)

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Book Synopsis Microscope Image Processing by : Fatima Merchant

Download or read book Microscope Image Processing written by Fatima Merchant and published by Academic Press. This book was released on 2022-08-26 with total page 528 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microscope Image Processing, Second Edition, introduces the basic fundamentals of image formation in microscopy including the importance of image digitization and display, which are key to quality visualization. Image processing and analysis are discussed in detail to provide readers with the tools necessary to improve the visual quality of images, and to extract quantitative information. Basic techniques such as image enhancement, filtering, segmentation, object measurement, and pattern recognition cover concepts integral to image processing. In addition, chapters on specific modern microscopy techniques such as fluorescence imaging, multispectral imaging, three-dimensional imaging and time-lapse imaging, introduce these key areas with emphasis on the differences among the various techniques. The new edition discusses recent developments in microscopy such as light sheet microscopy, digital microscopy, whole slide imaging, and the use of deep learning techniques for image segmentation and analysis with big data image informatics and management. Microscope Image Processing, Second Edition, is suitable for engineers, scientists, clinicians, post-graduate fellows and graduate students working in bioengineering, biomedical engineering, biology, medicine, chemistry, pharmacology and related fields, who use microscopes in their work and would like to understand the methodologies and capabilities of the latest digital image processing techniques or desire to develop their own image processing algorithms and software for specific applications. Presents a unique practical perspective of state-of-the-art microscope image processing and the development of specialized algorithms Each chapter includes in-depth analysis of methods coupled with the results of specific real-world experiments Co-edited by Kenneth R. Castleman, world-renowned pioneer in digital image processing and author of two seminal textbooks on the subject

Bioimage Data Analysis Workflows

Author : Kota Miura
Publisher : Springer Nature
ISBN 13 : 3030223868
Total Pages : 178 pages
Book Rating : 4.0/5 (32 download)

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Book Synopsis Bioimage Data Analysis Workflows by : Kota Miura

Download or read book Bioimage Data Analysis Workflows written by Kota Miura and published by Springer Nature. This book was released on 2019-10-17 with total page 178 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Open Access textbook provides students and researchers in the life sciences with essential practical information on how to quantitatively analyze data images. It refrains from focusing on theory, and instead uses practical examples and step-by step protocols to familiarize readers with the most commonly used image processing and analysis platforms such as ImageJ, MatLab and Python. Besides gaining knowhow on algorithm usage, readers will learn how to create an analysis pipeline by scripting language; these skills are important in order to document reproducible image analysis workflows. The textbook is chiefly intended for advanced undergraduates in the life sciences and biomedicine without a theoretical background in data analysis, as well as for postdocs, staff scientists and faculty members who need to perform regular quantitative analyses of microscopy images.

Computational Systems Biology Approaches in Cancer Research

Author : Inna Kuperstein
Publisher : CRC Press
ISBN 13 : 1000682927
Total Pages : 167 pages
Book Rating : 4.0/5 (6 download)

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Book Synopsis Computational Systems Biology Approaches in Cancer Research by : Inna Kuperstein

Download or read book Computational Systems Biology Approaches in Cancer Research written by Inna Kuperstein and published by CRC Press. This book was released on 2019-09-09 with total page 167 pages. Available in PDF, EPUB and Kindle. Book excerpt: Praise for Computational Systems BiologyApproaches in Cancer Research: "Complex concepts are written clearly and with informative illustrations and useful links. The book is enjoyable to read yet provides sufficient depth to serve as a valuable resource for both students and faculty." — Trey Ideker, Professor of Medicine, UC Xan Diego, School of Medicine "This volume is attractive because it addresses important and timely topics for research and teaching on computational methods in cancer research. It covers a broad variety of approaches, exposes recent innovations in computational methods, and provides acces to source code and to dedicated interactive web sites." — Yves Moreau, Department of Electrical Engineering, SysBioSys Centre for Computational Systems Biology, University of Leuven With the availability of massive amounts of data in biology, the need for advanced computational tools and techniques is becoming increasingly important and key in understanding biology in disease and healthy states. This book focuses on computational systems biology approaches, with a particular lens on tackling one of the most challenging diseases - cancer. The book provides an important reference and teaching material in the field of computational biology in general and cancer systems biology in particular. The book presents a list of modern approaches in systems biology with application to cancer research and beyond. It is structured in a didactic form such that the idea of each approach can easily be grasped from the short text and self-explanatory figures. The coverage of topics is diverse: from pathway resources, through methods for data analysis and single data analysis to drug response predictors, classifiers and image analysis using machine learning and artificial intelligence approaches. Features Up to date using a wide range of approaches Applicationexample in each chapter Online resources with useful applications’

Frontiers In Bioimage Informatics Methodology

Author : Jie Zhou
Publisher : World Scientific
ISBN 13 : 9811286140
Total Pages : 374 pages
Book Rating : 4.8/5 (112 download)

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Book Synopsis Frontiers In Bioimage Informatics Methodology by : Jie Zhou

Download or read book Frontiers In Bioimage Informatics Methodology written by Jie Zhou and published by World Scientific. This book was released on 2024-03-19 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: This unique compendium provides state-of-the-art computational methodology and applications in bioimage informatics. It covers cutting-edge technology developments in biological image analysis, where images come from new modalities and are often large scale, high throughput and high dimensional. The book reflects advances in intelligent algorithms for tasks such as biological image segmentation, reconstruction, and object tracking.Contributed by world renowned researchers, this useful reference text presents case studies that can potentially help readers find approaches and resources to address their imminent scientific problems.

Imaging and Spectroscopic Analysis of Living Cells

Author :
Publisher : Academic Press
ISBN 13 : 0123918693
Total Pages : 560 pages
Book Rating : 4.1/5 (239 download)

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Book Synopsis Imaging and Spectroscopic Analysis of Living Cells by :

Download or read book Imaging and Spectroscopic Analysis of Living Cells written by and published by Academic Press. This book was released on 2012-01-25 with total page 560 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume of Methods in Enzymology is the first of three parts looking at current methodology for the imaging and spectroscopic analysis of live cells. The chapters provide hints and tricks not available in primary research publications. It is an invaluable resource for academics, researchers and students alike. Expert authors who are leaders in the field Extensively referenced and useful figures and tables Provides hints and tricks to facilitate reproduction of methods

Computational Intelligence in Healthcare

Author : Amit Kumar Manocha
Publisher : Springer Nature
ISBN 13 : 3030687236
Total Pages : 418 pages
Book Rating : 4.0/5 (36 download)

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Book Synopsis Computational Intelligence in Healthcare by : Amit Kumar Manocha

Download or read book Computational Intelligence in Healthcare written by Amit Kumar Manocha and published by Springer Nature. This book was released on 2021-05-11 with total page 418 pages. Available in PDF, EPUB and Kindle. Book excerpt: Artificial intelligent systems, which offer great improvement in healthcare sector assisted by machine learning, wireless communications, data analytics, cognitive computing, and mobile computing provide more intelligent and convenient solutions and services. With the help of the advanced techniques, now a days it is possible to understand human body and to handle & process the health data anytime and anywhere. It is a smart healthcare system which includes patient, hospital management, doctors, monitoring, diagnosis, decision making modules, disease prevention to meet the challenges and problems arises in healthcare industry. Furthermore, the advanced healthcare systems need to upgrade with new capabilities to provide human with more intelligent and professional healthcare services to further improve the quality of service and user experience. To explore recent advances and disseminate state-of-the-art techniques related to intelligent healthcare services and applications. This edited book involved in designing systems that will permit the societal acceptance of ambient intelligence including signal processing, imaging, computing, instrumentation, artificial intelligence, internet of health things, data analytics, disease detection, telemedicine, and their applications. As the book includes recent trends in research issues and applications, the contents will be beneficial to Professors, researchers, and engineers. This book will provide support and aid to the researchers involved in designing latest advancements in communication and intelligent systems that will permit the societal acceptance of ambient intelligence. This book presents the latest research being conducted on diverse topics in intelligence technologies with the goal of advancing knowledge and applications healthcare sector and to present the latest snapshot of the ongoing research as well as to shed further light on future directions in this space. The aim of publishing the book is to serve for educators, researchers, and developers working in recent advances and upcoming technologies utilizing computational sciences.

Building Machine Learning Systems with Python

Author : Willi Richert
Publisher : Packt Publishing Ltd
ISBN 13 : 1782161414
Total Pages : 431 pages
Book Rating : 4.7/5 (821 download)

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Book Synopsis Building Machine Learning Systems with Python by : Willi Richert

Download or read book Building Machine Learning Systems with Python written by Willi Richert and published by Packt Publishing Ltd. This book was released on 2013-01-01 with total page 431 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is a tutorial-driven and practical, but well-grounded book showcasing good Machine Learning practices. There will be an emphasis on using existing technologies instead of showing how to write your own implementations of algorithms. This book is a scenario-based, example-driven tutorial. By the end of the book you will have learnt critical aspects of Machine Learning Python projects and experienced the power of ML-based systems by actually working on them.This book primarily targets Python developers who want to learn about and build Machine Learning into their projects, or who want to pro.

Euro-Par 2016: Parallel Processing Workshops

Author : Frédéric Desprez
Publisher : Springer
ISBN 13 : 3319589431
Total Pages : 829 pages
Book Rating : 4.3/5 (195 download)

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Book Synopsis Euro-Par 2016: Parallel Processing Workshops by : Frédéric Desprez

Download or read book Euro-Par 2016: Parallel Processing Workshops written by Frédéric Desprez and published by Springer. This book was released on 2017-05-26 with total page 829 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the workshops of the 23rd International Conference on Parallel and Distributed Computing, Euro-Par 2016, held in Grenoble, France in August 2016. The 65 full papers presented were carefully reviewed and selected from 95 submissions. The volume includes the papers from the following workshops: Euro-EDUPAR (Second European Workshop on Parallel and Distributed Computing Education for Undergraduate Students) – HeteroPar 2016 (the 14th International Workshop on Algorithms, Models and Tools for Parallel Computing on Heterogeneous Platforms) – IWMSE (5th International Workshop on Multicore Software Engineering) – LSDVE (Fourth Workshop on Large-Scale Distributed Virtual Environments) - PADABS (Fourth Workshop on Parallel and Distributed Agent-Based Simulations) – PBio (Fourth International Workshop on Parallelism in Bioinformatics) – PELGA (Second Workshop on Performance Engineering for Large-Scale Graph Analytics) – REPPAR (Third International Workshop on Reproducibility in Parallel Computing) – Resilience (9th Workshop in Resilience in High Performance Computing in Clusters, Clouds, and Grids) – ROME (Fourth Workshop on Runtime and Operating Systems for the Many-Core Era) – UCHPC (9th Workshop on UnConventional High-Performance Computing).

Digital Pathology

Author : Constantino Carlos Reyes-Aldasoro
Publisher : Springer
ISBN 13 : 3030239373
Total Pages : 192 pages
Book Rating : 4.0/5 (32 download)

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Book Synopsis Digital Pathology by : Constantino Carlos Reyes-Aldasoro

Download or read book Digital Pathology written by Constantino Carlos Reyes-Aldasoro and published by Springer. This book was released on 2019-07-03 with total page 192 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 15th European Congress on Digital Pathology, ECDP 2019, held in Warwick, UK in April 2019. The 21 full papers presented in this volume were carefully reviewed and selected from 30 submissions. The congress theme will be Accelerating Clinical Deployment, with a focus on computational pathology and leveraging the power of big data and artificial intelligence to bridge the gaps between research, development, and clinical uptake.

Medical Informatics and Bioimaging Using Artificial Intelligence

Author : Aboul Ella Hassanien
Publisher : Springer Nature
ISBN 13 : 3030911039
Total Pages : 256 pages
Book Rating : 4.0/5 (39 download)

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Book Synopsis Medical Informatics and Bioimaging Using Artificial Intelligence by : Aboul Ella Hassanien

Download or read book Medical Informatics and Bioimaging Using Artificial Intelligence written by Aboul Ella Hassanien and published by Springer Nature. This book was released on 2021-12-15 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book emphasizes the latest developments and achievements in artificial intelligence and related technologies, focusing on the applications of artificial intelligence and medical diagnosis. The book describes the theory, applications, concept visualization, and critical surveys covering most aspects of AI for medical informatics.

Standard and Super-Resolution Bioimaging Data Analysis

Author : Ann Wheeler
Publisher : John Wiley & Sons
ISBN 13 : 1119096928
Total Pages : 312 pages
Book Rating : 4.1/5 (19 download)

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Book Synopsis Standard and Super-Resolution Bioimaging Data Analysis by : Ann Wheeler

Download or read book Standard and Super-Resolution Bioimaging Data Analysis written by Ann Wheeler and published by John Wiley & Sons. This book was released on 2017-10-12 with total page 312 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive guide to the art and science of bioimaging data acquisition, processing and analysis Standard and Super-Resolution Bioimaging Data Analysis gets newcomers to bioimage data analysis quickly up to speed on the mathematics, statistics, computing hardware and acquisition technologies required to correctly process and document data. The past quarter century has seen remarkable progress in the field of light microscopy for biomedical science, with new imaging technologies coming on the market at an almost annual basis. Most of the data generated by these systems is image-based, and there is a significant increase in the content and throughput of these imaging systems. This, in turn, has resulted in a shift in the literature on biomedical research from descriptive to highly-quantitative. Standard and Super-Resolution Bioimaging Data Analysis satisfies the demand among students and research scientists for introductory guides to the tools for parsing and processing image data. Extremely well illustrated and including numerous examples, it clearly and accessibly explains what image data is and how to process and document it, as well as the current resources and standards in the field. A comprehensive guide to the tools for parsing and processing image data and the resources and industry standards for the biological and biomedical sciences Takes a practical approach to image analysis to assist scientists in ensuring scientific data are robust and reliable Covers fundamental principles in such a way as to give beginners a sound scientific base upon which to build Ideally suited for advanced students having only limited knowledge of the mathematics, statistics and computing required for image data analysis An entry-level text written for students and practitioners in the bioscience community, Standard and Super-Resolution Bioimaging Data Analysis de-mythologises the vast array of image analysis modalities which have come online over the past decade while schooling beginners in bioimaging principles, mathematics, technologies and standards.

International Conference on Intelligent Data Communication Technologies and Internet of Things (ICICI) 2018

Author : Jude Hemanth
Publisher : Springer
ISBN 13 : 3030031462
Total Pages : 1590 pages
Book Rating : 4.0/5 (3 download)

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Book Synopsis International Conference on Intelligent Data Communication Technologies and Internet of Things (ICICI) 2018 by : Jude Hemanth

Download or read book International Conference on Intelligent Data Communication Technologies and Internet of Things (ICICI) 2018 written by Jude Hemanth and published by Springer. This book was released on 2018-12-20 with total page 1590 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book discusses data communication and computer networking, communication technologies and the applications of IoT (Internet of Things), big data, cloud computing and healthcare informatics. It explores, examines and critiques intelligent data communications and presents inventive methodologies in communication technologies and IoT. Aimed at researchers and academicians who need to understand the importance of data communication and advanced technologies in IoT, it offers different perspectives to help readers increase their knowledge and motivates them to conduct research in the area, highlighting various innovative ideas for future research.

Brain Informatics

Author : Mufti Mahmud
Publisher : Springer Nature
ISBN 13 : 3030869938
Total Pages : 606 pages
Book Rating : 4.0/5 (38 download)

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Book Synopsis Brain Informatics by : Mufti Mahmud

Download or read book Brain Informatics written by Mufti Mahmud and published by Springer Nature. This book was released on 2021-09-15 with total page 606 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 14th International Conference on Brain Informatics, BI 2021, held in September 2021. The conference was held virtually due to the COVID-19 pandemic. The 49 full and 2 short papers together with 18 abstract papers were carefully reviewed and selected from 90 submissions. The papers are organized in the following topical sections: cognitive and computational foundations of brain science; investigations of human information processing systems; brain big data analytics, curation and management; informatics paradigms for brain and mental health research; and brain-machine intelligence and brain-inspired computing.

Medical Image Understanding and Analysis

Author : Guang Yang
Publisher : Springer Nature
ISBN 13 : 3031120531
Total Pages : 913 pages
Book Rating : 4.0/5 (311 download)

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Book Synopsis Medical Image Understanding and Analysis by : Guang Yang

Download or read book Medical Image Understanding and Analysis written by Guang Yang and published by Springer Nature. This book was released on 2022-07-25 with total page 913 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 26th Conference on Medical Image Understanding and Analysis, MIUA 2022, held in Cambridge, UK, in July 2022. The 65 full papers presented were carefully reviewed and selected from 95 submissions. They were organized according to following topical sections: biomarker detection; image registration, and reconstruction; image segmentation; generative models, biomedical simulation and modelling; classification; image enhancement, quality assessment, and data privacy; radiomics, predictive models, and quantitative imaging. Chapter “FCN-Transformer Feature Fusion for Polyp Segmentation” is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.

Encyclopedia of Information Science and Technology, Third Edition

Author : Khosrow-Pour, Mehdi
Publisher : IGI Global
ISBN 13 : 1466658894
Total Pages : 7972 pages
Book Rating : 4.4/5 (666 download)

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Book Synopsis Encyclopedia of Information Science and Technology, Third Edition by : Khosrow-Pour, Mehdi

Download or read book Encyclopedia of Information Science and Technology, Third Edition written by Khosrow-Pour, Mehdi and published by IGI Global. This book was released on 2014-07-31 with total page 7972 pages. Available in PDF, EPUB and Kindle. Book excerpt: "This 10-volume compilation of authoritative, research-based articles contributed by thousands of researchers and experts from all over the world emphasized modern issues and the presentation of potential opportunities, prospective solutions, and future directions in the field of information science and technology"--Provided by publisher.