Numerical Ecology with R

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Author :
Publisher : Springer
ISBN 13 : 331971404X
Total Pages : 444 pages
Book Rating : 4.3/5 (197 download)

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Book Synopsis Numerical Ecology with R by : Daniel Borcard

Download or read book Numerical Ecology with R written by Daniel Borcard and published by Springer. This book was released on 2018-03-19 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new edition of Numerical Ecology with R guides readers through an applied exploration of the major methods of multivariate data analysis, as seen through the eyes of three ecologists. It provides a bridge between a textbook of numerical ecology and the implementation of this discipline in the R language. The book begins by examining some exploratory approaches. It proceeds logically with the construction of the key building blocks of most methods, i.e. association measures and matrices, and then submits example data to three families of approaches: clustering, ordination and canonical ordination. The last two chapters make use of these methods to explore important and contemporary issues in ecology: the analysis of spatial structures and of community diversity. The aims of methods thus range from descriptive to explanatory and predictive and encompass a wide variety of approaches that should provide readers with an extensive toolbox that can address a wide palette of questions arising in contemporary multivariate ecological analysis. The second edition of this book features a complete revision to the R code and offers improved procedures and more diverse applications of the major methods. It also highlights important changes in the methods and expands upon topics such as multiple correspondence analysis, principal response curves and co-correspondence analysis. New features include the study of relationships between species traits and the environment, and community diversity analysis. This book is aimed at professional researchers, practitioners, graduate students and teachers in ecology, environmental science and engineering, and in related fields such as oceanography, molecular ecology, agriculture and soil science, who already have a background in general and multivariate statistics and wish to apply this knowledge to their data using the R language, as well as people willing to accompany their disciplinary learning with practical applications. People from other fields (e.g. geology, geography, paleoecology, phylogenetics, anthropology, the social and education sciences, etc.) may also benefit from the materials presented in this book. Users are invited to use this book as a teaching companion at the computer. All the necessary data files, the scripts used in the chapters, as well as extra R functions and packages written by the authors of the book, are available online (URL: http://adn.biol.umontreal.ca/~numericalecology/numecolR/).

Developments in Numerical Ecology

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Publisher : Springer Science & Business Media
ISBN 13 : 3642708803
Total Pages : 583 pages
Book Rating : 4.6/5 (427 download)

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Book Synopsis Developments in Numerical Ecology by : Pierre Legendre

Download or read book Developments in Numerical Ecology written by Pierre Legendre and published by Springer Science & Business Media. This book was released on 2013-06-29 with total page 583 pages. Available in PDF, EPUB and Kindle. Book excerpt: From earlier ecological studies it has become apparent that simple univariate or bivariate statistics are often inappropriate, and that multivariate statistical analyses must be applied. Despite several difficulties arising from the application of multivariate methods, community ecology has acquired a mathematical framework, with three consequences: it can develop as an exact science; it can be applied operationally as a computer-assisted science to the solution of environmental problems; and it can exchange information with other disciplines using the language of mathematics. This book comprises the invited lectures, as well as working group reports, on the NATO workshop held in Roscoff (France) to improve the applicability of this new method numerical ecology to specific ecological problems.

Numerical Ecology

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Author :
Publisher : Elsevier
ISBN 13 : 008052317X
Total Pages : 870 pages
Book Rating : 4.0/5 (85 download)

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Book Synopsis Numerical Ecology by : P. Legendre

Download or read book Numerical Ecology written by P. Legendre and published by Elsevier. This book was released on 1998-11-25 with total page 870 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book describes and discusses the numerical methods which are successfully being used for analysing ecological data, using a clear and comprehensive approach. These methods are derived from the fields of mathematical physics, parametric and nonparametric statistics, information theory, numerical taxonomy, archaeology, psychometry, sociometry, econometry and others. Compared to the first edition of Numerical Ecology, this second edition includes three new chapters, dealing with the analysis of semiquantitative data, canonical analysis and spatial analysis. New sections have been added to almost all other chapters. There are sections listing available computer programs and packages at the end of several chapters. As in the previous English and French editions, there are numerous examples from the ecological literature, and the choice of methods is facilitated by several synoptic tables.

Mixed Effects Models and Extensions in Ecology with R

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Publisher : Springer Science & Business Media
ISBN 13 : 0387874585
Total Pages : 579 pages
Book Rating : 4.3/5 (878 download)

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Book Synopsis Mixed Effects Models and Extensions in Ecology with R by : Alain Zuur

Download or read book Mixed Effects Models and Extensions in Ecology with R written by Alain Zuur and published by Springer Science & Business Media. This book was released on 2009-03-05 with total page 579 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book discusses advanced statistical methods that can be used to analyse ecological data. Most environmental collected data are measured repeatedly over time, or space and this requires the use of GLMM or GAMM methods. The book starts by revising regression, additive modelling, GAM and GLM, and then discusses dealing with spatial or temporal dependencies and nested data.

Ecological Models and Data in R

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Author :
Publisher : Princeton University Press
ISBN 13 : 0691125228
Total Pages : 408 pages
Book Rating : 4.6/5 (911 download)

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Book Synopsis Ecological Models and Data in R by : Benjamin M. Bolker

Download or read book Ecological Models and Data in R written by Benjamin M. Bolker and published by Princeton University Press. This book was released on 2008-07-21 with total page 408 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduction and background; Exploratory data analysis and graphics; Deterministic functions for ecological modeling; Probability and stochastic distributions for ecological modeling; Stochatsic simulation and power analysis; Likelihood and all that; Optimization and all that; Likelihood examples; Standar statistics revisited; Modeling variance; Dynamic models.

Introduction to R for Terrestrial Ecology

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Publisher : Springer Nature
ISBN 13 : 3030276031
Total Pages : 167 pages
Book Rating : 4.0/5 (32 download)

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Book Synopsis Introduction to R for Terrestrial Ecology by : Milena Lakicevic

Download or read book Introduction to R for Terrestrial Ecology written by Milena Lakicevic and published by Springer Nature. This book was released on 2020-01-17 with total page 167 pages. Available in PDF, EPUB and Kindle. Book excerpt: This textbook covers R data analysis related to environmental science, starting with basic examples and proceeding up to advanced applications of the R programming language. The main objective of the textbook is to serve as a guide for undergraduate students, who have no previous experience with R, but part of the textbook is dedicated to advanced R applications, and will also be useful for Masters and PhD students, and professionals. The textbook deals with solving specific programming tasks in R, and tasks are organized in terms of gradually increasing R proficiency, with examples getting more challenging as the chapters progress. The main competencies students will acquire from this textbook are: manipulating and processing data tables performing statistical tests creating maps in R This textbook will be useful in undergraduate and graduate courses in Advanced Landscape Ecology, Analysis of Ecological and Environmental Data, Ecological Modeling, Analytical Methods for Ecologists, Statistical Inference for Applied Research, Elements of Statistical Methods, Computational Ecology, Landscape Metrics and Spatial Statistics.

Handbook of Trait-Based Ecology

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Publisher : Cambridge University Press
ISBN 13 : 1108472915
Total Pages : 311 pages
Book Rating : 4.1/5 (84 download)

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Book Synopsis Handbook of Trait-Based Ecology by : Francesco de Bello

Download or read book Handbook of Trait-Based Ecology written by Francesco de Bello and published by Cambridge University Press. This book was released on 2021-03-11 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: Trait-based ecology is rapidly expanding. This comprehensive and accessible guide covers the main concepts and tools in functional ecology.

Numerical Ecology with R

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Author :
Publisher : Springer Science & Business Media
ISBN 13 : 144197976X
Total Pages : 315 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis Numerical Ecology with R by : Daniel Borcard

Download or read book Numerical Ecology with R written by Daniel Borcard and published by Springer Science & Business Media. This book was released on 2011-01-07 with total page 315 pages. Available in PDF, EPUB and Kindle. Book excerpt: Numerical Ecology with R provides a long-awaited bridge between a textbook in Numerical Ecology and the implementation of this discipline in the R language. After short theoretical overviews, the authors accompany the users through the exploration of the methods by means of applied and extensively commented examples. Users are invited to use this book as a teaching companion at the computer. The travel starts with exploratory approaches, proceeds with the construction of association matrices, then addresses three families of methods: clustering, unconstrained and canonical ordination, and spatial analysis. All the necessary data files, the scripts used in the chapters, as well as the extra R functions and packages written by the authors, can be downloaded from a web page accessible through the Springer web site(http://adn.biol.umontreal.ca/~numericalecology/numecolR/). This book is aimed at professional researchers, practitioners, graduate students and teachers in ecology, environmental science and engineering, and in related fields such as oceanography, molecular ecology, agriculture and soil science, who already have a background in general and multivariate statistics and wish to apply this knowledge to their data using the R language, as well as people willing to accompany their disciplinary learning with practical applications. People from other fields (e.g. geology, geography, paleoecology, phylogenetics, anthropology, the social and education sciences, etc.) may also benefit from the materials presented in this book. The three authors teach numerical ecology, both theoretical and practical, to a wide array of audiences, in regular courses in their Universities and in short courses given around the world. Daniel Borcard is lecturer of Biostatistics and Ecology and researcher in Numerical Ecology at Université de Montréal, Québec, Canada. François Gillet is professor of Community Ecology and Ecological Modelling at Université de Franche-Comté, Besançon, France. Pierre Legendre is professor of Quantitative Biology and Ecology at Université de Montréal, Fellow of the Royal Society of Canada, and ISI Highly Cited Researcher in Ecology/Environment.

The R Book

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Publisher : John Wiley & Sons
ISBN 13 : 9780470515068
Total Pages : 953 pages
Book Rating : 4.5/5 (15 download)

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Book Synopsis The R Book by : Michael J. Crawley

Download or read book The R Book written by Michael J. Crawley and published by John Wiley & Sons. This book was released on 2007-06-13 with total page 953 pages. Available in PDF, EPUB and Kindle. Book excerpt: The high-level language of R is recognized as one of the mostpowerful and flexible statistical software environments, and israpidly becoming the standard setting for quantitative analysis,statistics and graphics. R provides free access to unrivalledcoverage and cutting-edge applications, enabling the user to applynumerous statistical methods ranging from simple regression to timeseries or multivariate analysis. Building on the success of the author’s bestsellingStatistics: An Introduction using R, The R Book ispacked with worked examples, providing an all inclusive guide to R,ideal for novice and more accomplished users alike. The bookassumes no background in statistics or computing and introduces theadvantages of the R environment, detailing its applications in awide range of disciplines. Provides the first comprehensive reference manual for the Rlanguage, including practical guidance and full coverage of thegraphics facilities. Introduces all the statistical models covered by R, beginningwith simple classical tests such as chi-square and t-test. Proceeds to examine more advance methods, from regression andanalysis of variance, through to generalized linear models,generalized mixed models, time series, spatial statistics,multivariate statistics and much more. The R Book is aimed at undergraduates, postgraduates andprofessionals in science, engineering and medicine. It is alsoideal for students and professionals in statistics, economics,geography and the social sciences.

Functional and Phylogenetic Ecology in R

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Publisher : Springer Science & Business Media
ISBN 13 : 1461495423
Total Pages : 217 pages
Book Rating : 4.4/5 (614 download)

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Book Synopsis Functional and Phylogenetic Ecology in R by : Nathan G. Swenson

Download or read book Functional and Phylogenetic Ecology in R written by Nathan G. Swenson and published by Springer Science & Business Media. This book was released on 2014-03-26 with total page 217 pages. Available in PDF, EPUB and Kindle. Book excerpt: Functional and Phylogenetic Ecology in R is designed to teach readers to use R for phylogenetic and functional trait analyses. Over the past decade, a dizzying array of tools and methods were generated to incorporate phylogenetic and functional information into traditional ecological analyses. Increasingly these tools are implemented in R, thus greatly expanding their impact. Researchers getting started in R can use this volume as a step-by-step entryway into phylogenetic and functional analyses for ecology in R. More advanced users will be able to use this volume as a quick reference to understand particular analyses. The volume begins with an introduction to the R environment and handling relevant data in R. Chapters then cover phylogenetic and functional metrics of biodiversity; null modeling and randomizations for phylogenetic and functional trait analyses; integrating phylogenetic and functional trait information; and interfacing the R environment with a popular C-based program. This book presents a unique approach through its focus on ecological analyses and not macroevolutionary analyses. The author provides his own code, so that the reader is guided through the computational steps to calculate the desired metrics. This guided approach simplifies the work of determining which package to use for any given analysis. Example datasets are shared to help readers practice, and readers can then quickly turn to their own datasets.

A Practical Guide to Ecological Modelling

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Publisher : Springer Science & Business Media
ISBN 13 : 1402086237
Total Pages : 376 pages
Book Rating : 4.4/5 (2 download)

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Book Synopsis A Practical Guide to Ecological Modelling by : Karline Soetaert

Download or read book A Practical Guide to Ecological Modelling written by Karline Soetaert and published by Springer Science & Business Media. This book was released on 2008-10-21 with total page 376 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematical modelling is an essential tool in present-day ecological research. Yet for many ecologists it is still problematic to apply modelling in their research. In our experience, the major problem is at the conceptual level: proper understanding of what a model is, how ecological relations can be translated consistently into mathematical equations, how models are solved, steady states calculated and interpreted. Many textbooks jump over these conceptual hurdles to dive into detailed formulations or the mathematics of solution. This book attempts to fill that gap. It introduces essential concepts for mathematical modelling, explains the mathematics behind the methods, and helps readers to implement models and obtain hands-on experience. Throughout the book, emphasis is laid on how to translate ecological questions into interpretable models in a practical way. The book aims to be an introductory textbook at the undergraduate-graduate level, but will also be useful to seduce experienced ecologists into the world of modelling. The range of ecological models treated is wide, from Lotka-Volterra type of principle-seeking models to environmental or ecosystem models, and including matrix models, lattice models and sequential decision models. All chapters contain a concise introduction into the theory, worked-out examples and exercises. All examples are implemented in the open-source package R, thus taking away problems of software availability for use of the book. All code used in the book is available on a dedicated website.

Geocomputation with R

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Publisher : CRC Press
ISBN 13 : 1351396900
Total Pages : 354 pages
Book Rating : 4.3/5 (513 download)

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Book Synopsis Geocomputation with R by : Robin Lovelace

Download or read book Geocomputation with R written by Robin Lovelace and published by CRC Press. This book was released on 2019-03-22 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: Geocomputation with R is for people who want to analyze, visualize and model geographic data with open source software. It is based on R, a statistical programming language that has powerful data processing, visualization, and geospatial capabilities. The book equips you with the knowledge and skills to tackle a wide range of issues manifested in geographic data, including those with scientific, societal, and environmental implications. This book will interest people from many backgrounds, especially Geographic Information Systems (GIS) users interested in applying their domain-specific knowledge in a powerful open source language for data science, and R users interested in extending their skills to handle spatial data. The book is divided into three parts: (I) Foundations, aimed at getting you up-to-speed with geographic data in R, (II) extensions, which covers advanced techniques, and (III) applications to real-world problems. The chapters cover progressively more advanced topics, with early chapters providing strong foundations on which the later chapters build. Part I describes the nature of spatial datasets in R and methods for manipulating them. It also covers geographic data import/export and transforming coordinate reference systems. Part II represents methods that build on these foundations. It covers advanced map making (including web mapping), "bridges" to GIS, sharing reproducible code, and how to do cross-validation in the presence of spatial autocorrelation. Part III applies the knowledge gained to tackle real-world problems, including representing and modeling transport systems, finding optimal locations for stores or services, and ecological modeling. Exercises at the end of each chapter give you the skills needed to tackle a range of geospatial problems. Solutions for each chapter and supplementary materials providing extended examples are available at https://geocompr.github.io/geocompkg/articles/.

Statistics for Ecologists Using R and Excel

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Author :
Publisher : Pelagic Publishing Ltd
ISBN 13 : 1784271411
Total Pages : 503 pages
Book Rating : 4.7/5 (842 download)

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Book Synopsis Statistics for Ecologists Using R and Excel by : Mark Gardener

Download or read book Statistics for Ecologists Using R and Excel written by Mark Gardener and published by Pelagic Publishing Ltd. This book was released on 2017-01-16 with total page 503 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is a book about the scientific process and how you apply it to data in ecology. You will learn how to plan for data collection, how to assemble data, how to analyze data and finally how to present the results. The book uses Microsoft Excel and the powerful Open Source R program to carry out data handling as well as producing graphs. Statistical approaches covered include: data exploration; tests for difference – t-test and U-test; correlation – Spearman’s rank test and Pearson product-moment; association including Chi-squared tests and goodness of fit; multivariate testing using analysis of variance (ANOVA) and Kruskal–Wallis test; and multiple regression. Key skills taught in this book include: how to plan ecological projects; how to record and assemble your data; how to use R and Excel for data analysis and graphs; how to carry out a wide range of statistical analyses including analysis of variance and regression; how to create professional looking graphs; and how to present your results. New in this edition: a completely revised chapter on graphics including graph types and their uses, Excel Chart Tools, R graphics commands and producing different chart types in Excel and in R; an expanded range of support material online, including; example data, exercises and additional notes & explanations; a new chapter on basic community statistics, biodiversity and similarity; chapter summaries and end-of-chapter exercises. Praise for the first edition: This book is a superb way in for all those looking at how to design investigations and collect data to support their findings. – Sue Townsend, Biodiversity Learning Manager, Field Studies Council [M]akes it easy for the reader to synthesise R and Excel and there is extra help and sample data available on the free companion webpage if needed. I recommended this text to the university library as well as to colleagues at my student workshops on R. Although I initially bought this book when I wanted to discover R I actually also learned new techniques for data manipulation and management in Excel – Mark Edwards, EcoBlogging A must for anyone getting to grips with data analysis using R and excel. – Amazon 5-star review It has been very easy to follow and will be perfect for anyone. – Amazon 5-star review A solid introduction to working with Excel and R. The writing is clear and informative, the book provides plenty of examples and figures so that each string of code in R or step in Excel is understood by the reader. – Goodreads, 4-star review

A Primer of Ecology with R

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Author :
Publisher : Springer Science & Business Media
ISBN 13 : 0387898824
Total Pages : 404 pages
Book Rating : 4.3/5 (878 download)

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Book Synopsis A Primer of Ecology with R by : M. Henry Stevens

Download or read book A Primer of Ecology with R written by M. Henry Stevens and published by Springer Science & Business Media. This book was released on 2009-06-02 with total page 404 pages. Available in PDF, EPUB and Kindle. Book excerpt: Provides simple explanations of the important concepts in population and community ecology. Provides R code throughout, to illustrate model development and analysis, as well as appendix introducing the R language. Interweaves ecological content and code so that either stands alone. Supplemental web site for additional code.

Community Ecology

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Publisher : Oxford University Press
ISBN 13 : 0192572865
Total Pages : 448 pages
Book Rating : 4.1/5 (925 download)

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Book Synopsis Community Ecology by : Gary G. Mittelbach

Download or read book Community Ecology written by Gary G. Mittelbach and published by Oxford University Press. This book was released on 2019-05-24 with total page 448 pages. Available in PDF, EPUB and Kindle. Book excerpt: Community ecology has undergone a transformation in recent years, from a discipline largely focused on processes occurring within a local area to a discipline encompassing a much richer domain of study, including the linkages between communities separated in space (metacommunity dynamics), niche and neutral theory, the interplay between ecology and evolution (eco-evolutionary dynamics), and the influence of historical and regional processes in shaping patterns of biodiversity. To fully understand these new developments, however, students continue to need a strong foundation in the study of species interactions and how these interactions are assembled into food webs and other ecological networks. This new edition fulfils the book's original aims, both as a much-needed up-to-date and accessible introduction to modern community ecology, and in identifying the important questions that are yet to be answered. This research-driven textbook introduces state-of-the-art community ecology to a new generation of students, adopting reasoned and balanced perspectives on as-yet-unresolved issues. Community Ecology is suitable for advanced undergraduates, graduate students, and researchers seeking a broad, up-to-date coverage of ecological concepts at the community level.

Using R for Introductory Statistics

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Publisher : CRC Press
ISBN 13 : 1315360306
Total Pages : 522 pages
Book Rating : 4.3/5 (153 download)

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Book Synopsis Using R for Introductory Statistics by : John Verzani

Download or read book Using R for Introductory Statistics written by John Verzani and published by CRC Press. This book was released on 2018-10-03 with total page 522 pages. Available in PDF, EPUB and Kindle. Book excerpt: The second edition of a bestselling textbook, Using R for Introductory Statistics guides students through the basics of R, helping them overcome the sometimes steep learning curve. The author does this by breaking the material down into small, task-oriented steps. The second edition maintains the features that made the first edition so popular, while updating data, examples, and changes to R in line with the current version. See What’s New in the Second Edition: Increased emphasis on more idiomatic R provides a grounding in the functionality of base R. Discussions of the use of RStudio helps new R users avoid as many pitfalls as possible. Use of knitr package makes code easier to read and therefore easier to reason about. Additional information on computer-intensive approaches motivates the traditional approach. Updated examples and data make the information current and topical. The book has an accompanying package, UsingR, available from CRAN, R’s repository of user-contributed packages. The package contains the data sets mentioned in the text (data(package="UsingR")), answers to selected problems (answers()), a few demonstrations (demo()), the errata (errata()), and sample code from the text. The topics of this text line up closely with traditional teaching progression; however, the book also highlights computer-intensive approaches to motivate the more traditional approach. The authors emphasize realistic data and examples and rely on visualization techniques to gather insight. They introduce statistics and R seamlessly, giving students the tools they need to use R and the information they need to navigate the sometimes complex world of statistical computing.

How to be a Quantitative Ecologist

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Publisher : John Wiley & Sons
ISBN 13 : 1119991722
Total Pages : 501 pages
Book Rating : 4.1/5 (199 download)

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Book Synopsis How to be a Quantitative Ecologist by : Jason Matthiopoulos

Download or read book How to be a Quantitative Ecologist written by Jason Matthiopoulos and published by John Wiley & Sons. This book was released on 2011-04-12 with total page 501 pages. Available in PDF, EPUB and Kindle. Book excerpt: Ecological research is becoming increasingly quantitative, yet students often opt out of courses in mathematics and statistics, unwittingly limiting their ability to carry out research in the future. This textbook provides a practical introduction to quantitative ecology for students and practitioners who have realised that they need this opportunity. The text is addressed to readers who haven't used mathematics since school, who were perhaps more confused than enlightened by their undergraduate lectures in statistics and who have never used a computer for much more than word processing and data entry. From this starting point, it slowly but surely instils an understanding of mathematics, statistics and programming, sufficient for initiating research in ecology. The book’s practical value is enhanced by extensive use of biological examples and the computer language R for graphics, programming and data analysis. Key Features: Provides a complete introduction to mathematics statistics and computing for ecologists. Presents a wealth of ecological examples demonstrating the applied relevance of abstract mathematical concepts, showing how a little technique can go a long way in answering interesting ecological questions. Covers elementary topics, including the rules of algebra, logarithms, geometry, calculus, descriptive statistics, probability, hypothesis testing and linear regression. Explores more advanced topics including fractals, non-linear dynamical systems, likelihood and Bayesian estimation, generalised linear, mixed and additive models, and multivariate statistics. R boxes provide step-by-step recipes for implementing the graphical and numerical techniques outlined in each section. How to be a Quantitative Ecologist provides a comprehensive introduction to mathematics, statistics and computing and is the ideal textbook for late undergraduate and postgraduate courses in environmental biology. "With a book like this, there is no excuse for people to be afraid of maths, and to be ignorant of what it can do." —Professor Tim Benton, Faculty of Biological Sciences, University of Leeds, UK