Immune System Modeling And Analysis

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Immune system modeling and analysis

Author : Ramit Mehr
Publisher : Frontiers Media SA
ISBN 13 : 2889195015
Total Pages : 402 pages
Book Rating : 4.8/5 (891 download)

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Book Synopsis Immune system modeling and analysis by : Ramit Mehr

Download or read book Immune system modeling and analysis written by Ramit Mehr and published by Frontiers Media SA. This book was released on 2015-04-22 with total page 402 pages. Available in PDF, EPUB and Kindle. Book excerpt: The rapid development of new methods for immunological data collection – from multicolor flow cytometry, through single-cell imaging, to deep sequencing – presents us now, for the first time, with the ability to analyze and compare large amounts of immunological data in health, aging and disease. The exponential growth of these datasets, however, challenges the theoretical immunology community to develop methods for data organization and analysis. Furthermore, the need to test hypotheses regarding immune function, and generate predictions regarding the outcomes of medical interventions, necessitates the development of mathematical and computational models covering processes on multiple scales, from the genetic and molecular to the cellular and system scales. The last few decades have seen the development of methods for presentation and analysis of clonal repertoires (those of T and B lymphocytes) and phenotypic (surface-marker based) repertoires of all lymphocyte types, and for modeling the intricate network of molecular and cellular interactions within the immune systems. This e-Book, which has first appeared as a ‘Frontiers in Immunology’ research topic, provides a comprehensive, online, open access snapshot of the current state of the art on immune system modeling and analysis.

A Survey of Models for Tumor-Immune System Dynamics

Author : John A. Adam
Publisher : Springer Science & Business Media
ISBN 13 : 0817681191
Total Pages : 357 pages
Book Rating : 4.8/5 (176 download)

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Book Synopsis A Survey of Models for Tumor-Immune System Dynamics by : John A. Adam

Download or read book A Survey of Models for Tumor-Immune System Dynamics written by John A. Adam and published by Springer Science & Business Media. This book was released on 2012-10-06 with total page 357 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematical Modeling and Immunology An enormous amount of human effort and economic resources has been directed in this century to the fight against cancer. The purpose, of course, has been to find strategies to overcome this hard, challenging and seemingly endless struggle. We can readily imagine that even greater efforts will be required in the next century. The hope is that ultimately humanity will be successful; success will have been achieved when it is possible to activate and control the immune system in its competition against neoplastic cells. Dealing with the above-mentioned problem requires the fullest pos sible cooperation among scientists working in different fields: biology, im munology, medicine, physics and, we believe, mathematics. Certainly, bi ologists and immunologists will make the greatest contribution to the re search. However, it is now increasingly recognized that mathematics and computer science may well able to make major contributions to such prob lems. We cannot expect mathematicians alone to solve fundamental prob lems in immunology and (in particular) cancer research, but valuable sup port, however modest, can be provided by mathematicians to the research aspirations of biologists and immunologists working in this field.

Mathematical Modeling of the Immune System in Homeostasis, Infection and Disease

Author : Gennady Bocharov
Publisher : Frontiers Media SA
ISBN 13 : 2889634612
Total Pages : 278 pages
Book Rating : 4.8/5 (896 download)

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Book Synopsis Mathematical Modeling of the Immune System in Homeostasis, Infection and Disease by : Gennady Bocharov

Download or read book Mathematical Modeling of the Immune System in Homeostasis, Infection and Disease written by Gennady Bocharov and published by Frontiers Media SA. This book was released on 2020-02-24 with total page 278 pages. Available in PDF, EPUB and Kindle. Book excerpt: The immune system provides the host organism with defense mechanisms against invading pathogens and tumor development and it plays an active role in tissue and organ regeneration. Deviations from the normal physiological functioning of the immune system can lead to the development of diseases with various pathologies including autoimmune diseases and cancer. Modern research in immunology is characterized by an unprecedented level of detail that has progressed towards viewing the immune system as numerous components that function together as a whole network. Currently, we are facing significant difficulties in analyzing the data being generated from high-throughput technologies for understanding immune system dynamics and functions, a problem known as the ‘curse of dimensionality’. As the mainstream research in mathematical immunology is based on low-resolution models, a fundamental question is how complex the mathematical models should be? To respond to this challenging issue, we advocate a hypothesis-driven approach to formulate and apply available mathematical modelling technologies for understanding the complexity of the immune system. Moreover, pure empirical analyses of immune system behavior and the system’s response to external perturbations can only produce a static description of the individual components of the immune system and the interactions between them. Shifting our view of the immune system from a static schematic perception to a dynamic multi-level system is a daunting task. It requires the development of appropriate mathematical methodologies for the holistic and quantitative analysis of multi-level molecular and cellular networks. Their coordinated behavior is dynamically controlled via distributed feedback and feedforward mechanisms which altogether orchestrate immune system functions. The molecular regulatory loops inherent to the immune system that mediate cellular behaviors, e.g. exhaustion, suppression, activation and tuning, can be analyzed using mathematical categories such as multi-stability, switches, ultra-sensitivity, distributed system, graph dynamics, or hierarchical control. GB is supported by the Russian Science Foundation (grant 18-11-00171). AM is also supported by grants from the Spanish Ministry of Economy, Industry and Competitiveness and FEDER grant no. SAF2016-75505-R, the “María de Maeztu” Programme for Units of Excellence in R&D (MDM-2014-0370) and the Russian Science Foundation (grant 18-11-00171).

Systems Immunology

Author : Jayajit Das
Publisher : CRC Press
ISBN 13 : 1498717411
Total Pages : 355 pages
Book Rating : 4.4/5 (987 download)

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Book Synopsis Systems Immunology by : Jayajit Das

Download or read book Systems Immunology written by Jayajit Das and published by CRC Press. This book was released on 2018-09-03 with total page 355 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Taken together, the body of information contained in this book provides readers with a bird’s-eye view of different aspects of exciting work at the convergence of disciplines that will ultimately lead to a future where we understand how immunity is regulated, and how we can harness this knowledge toward practical ends that reduce human suffering. I commend the editors for putting this volume together." –Arup K. Chakraborty, Robert T. Haslam Professor of Chemical Engineering, and Professor of Physics, Chemistry, and Biological Engineering, Massachusetts Institute of Technology, Cambridge, USA New experimental techniques in immunology have produced large and complex data sets that require quantitative modeling for analysis. This book provides a complete overview of computational immunology, from basic concepts to mathematical modeling at the single molecule, cellular, organism, and population levels. It showcases modern mechanistic models and their use in making predictions, designing experiments, and elucidating underlying biochemical processes. It begins with an introduction to data analysis, approximations, and assumptions used in model building. Core chapters address models and methods for studying immune responses, with fundamental concepts clearly defined. Readers from immunology, quantitative biology, and applied physics will benefit from the following: Fundamental principles of computational immunology and modern quantitative methods for studying immune response at the single molecule, cellular, organism, and population levels. An overview of basic concepts in modeling and data analysis. Coverage of topics where mechanistic modeling has contributed substantially to current understanding. Discussion of genetic diversity of the immune system, cell signaling in the immune system, immune response at the cell population scale, and ecology of host-pathogen interactions.

Mathematical Modelling of Immune Response in Infectious Diseases

Author : Guri I. Marchuk
Publisher : Springer Science & Business Media
ISBN 13 : 9401587981
Total Pages : 356 pages
Book Rating : 4.4/5 (15 download)

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Book Synopsis Mathematical Modelling of Immune Response in Infectious Diseases by : Guri I. Marchuk

Download or read book Mathematical Modelling of Immune Response in Infectious Diseases written by Guri I. Marchuk and published by Springer Science & Business Media. This book was released on 2013-04-17 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt: Beginning his work on the monograph to be published in English, this author tried to present more or less general notions of the possibilities of mathematics in the new and rapidly developing science of infectious immunology, describing the processes of an organism's defence against antigen invasions. The results presented in this monograph are based on the construc tion and application of closed models of immune response to infections which makes it possible to approach problems of optimizing the treat ment of chronic and hypertoxic forms of diseases. The author, being a mathematician, had creative long-Iasting con tacts with immunologists, geneticist, biologists, and clinicians. As far back as 1976 it resulted in the organization of a special seminar in the Computing Center of Siberian Branch of the USSR Academy of Sci ences on mathematical models in immunology. The seminar attracted the attention of a wide circle of leading specialists in various fields of science. All these made it possible to approach, from a more or less united stand point, the construction of models of immune response, the mathematical description of the models, and interpretation of results.

Mathematical and Statistical Approaches to AIDS Epidemiology

Author : Carlos Castillo-Chavez
Publisher : Springer Science & Business Media
ISBN 13 : 3642934544
Total Pages : 416 pages
Book Rating : 4.6/5 (429 download)

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Book Synopsis Mathematical and Statistical Approaches to AIDS Epidemiology by : Carlos Castillo-Chavez

Download or read book Mathematical and Statistical Approaches to AIDS Epidemiology written by Carlos Castillo-Chavez and published by Springer Science & Business Media. This book was released on 2013-03-13 with total page 416 pages. Available in PDF, EPUB and Kindle. Book excerpt: The 18 research articles of this volume discuss the major themes that have emerged from mathematical and statistical research in the epidemiology of HIV. The opening paper reviews important recent contributions. Five sections follow: Statistical Methodology and Forecasting, Infectivity and the HIV, Heterogeneity and HIV Transmission Dynamics, Social Dynamics and AIDS, and The Immune System and The HIV. In each, leading experts in AIDS epidemiology present the recent results. Some address the role of variable infectivity, heterogeneous mixing, and long periods of infectiousness in the dynamics of HIV; others concentrate on parameter estimation and short-term forecasting. The last section looks at the interaction between the HIV and the immune system.

Molecular Biology of The Cell

Author : Bruce Alberts
Publisher :
ISBN 13 : 9780815332183
Total Pages : 0 pages
Book Rating : 4.3/5 (321 download)

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Book Synopsis Molecular Biology of The Cell by : Bruce Alberts

Download or read book Molecular Biology of The Cell written by Bruce Alberts and published by . This book was released on 2002 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Immune System Modelling and Simulation

Author : Filippo Castiglione
Publisher : CRC Press
ISBN 13 : 1466597496
Total Pages : 286 pages
Book Rating : 4.4/5 (665 download)

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Book Synopsis Immune System Modelling and Simulation by : Filippo Castiglione

Download or read book Immune System Modelling and Simulation written by Filippo Castiglione and published by CRC Press. This book was released on 2015-04-07 with total page 286 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book describes a computational model of the immune system reaction, C-ImmSim, built along the lines of the computer model known as the Celada-Seiden model (CS-model). The computational counterpart of the CS-model is called IMMSIM which stands for IMMune system SIMulator. IMMSIM was written in 1992 by the physicist Phil E. Seiden and the immunologist Franco Celada. This model was built around the idea of developing a computerized system to perform experiments similar in vivo experiments; a tool developed to help biologists testing theories and hypothesis about how the immune system works. C-ImmSim is best viewed as a collection of models in a single program. It incorporates the principal core facts of today’s immunological knowledge, such as the diversity of specific elements, MHC restriction, clonal selection, thymic education of T cells, antigen processing and presentation (both the cytosolic and endocytic pathways are implemented), cell-cell cooperation, homeostasis of cells created by the bone marrow, hyper mutation of antibodies, maturation of the cellular and humoral response, and memory. Besides, an antigen can represent a bacterium, a virus, or an allergen or a tumor cell. C-ImmSim has been recently customized to simulate the HIV-1 infection. Moreover, it can simulate the immunotherapy for cancer. These features are all present in the code and people can choose to turn them on and off at compiling time. The book presents the basic model as well as the various customizations to implement the description of different diseases and the way they have been used in practice to produce new knowledge either from hypothesis or from lab-experiment data. In this respect, the book can be used as a practical guide to implement a computational model with which to study a specific disease and to try to address realistic clinical questions.

Artificial Immune Systems and Their Applications

Author : Dipankar Dasgupta
Publisher : Springer Science & Business Media
ISBN 13 : 364259901X
Total Pages : 318 pages
Book Rating : 4.6/5 (425 download)

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Book Synopsis Artificial Immune Systems and Their Applications by : Dipankar Dasgupta

Download or read book Artificial Immune Systems and Their Applications written by Dipankar Dasgupta and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is a pioneering work on the emerging field of artificial immune systems-highly distributed systems based on the principles of the natural system. Like artificial neural networks, artificial immune systems can learn new information and recall previously learned information. This book provides an overview of artificial immune systems, explaining its applications in areas such as immunological memory, anomaly detection algorithms, and modeling the effects of prior infection on vaccine efficacy.

Computational Immunology

Author : Josep Bassaganya-Riera
Publisher : Academic Press
ISBN 13 : 0128037156
Total Pages : 210 pages
Book Rating : 4.1/5 (28 download)

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Book Synopsis Computational Immunology by : Josep Bassaganya-Riera

Download or read book Computational Immunology written by Josep Bassaganya-Riera and published by Academic Press. This book was released on 2015-10-21 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational Immunology: Models and Tools encompasses the methodological framework and application of cutting-edge tools and techniques to study immunological processes at a systems level, along with the concept of multi-scale modeling. The book's emphasis is on selected cases studies and application of the most updated technologies in computational modeling, discussing topics such as computational modeling and its usage in immunological research, bioinformatics infrastructure, ODE based modeling, agent based modeling, and high performance computing, data analytics, and multiscale modeling. There are also modeling exercises using recent tools and models which lead the readers to a thorough comprehension and applicability. The book is a valuable resource for immunologists, computational biologists, bioinformaticians, biotechnologists, and computer scientists, as well as all those who wish to broaden their knowledge in systems modeling. Offers case studies with different levels of complexity Provides a detailed view on cutting-edge tools for modeling that are useful to experimentalists with limited computational skills Explores the usage of simulation for hypothesis generation, helping the reader to understand the most valuable points on experimental setting

Immunoinformatics

Author : Gregory R. Bock
Publisher : John Wiley & Sons
ISBN 13 : 0470090758
Total Pages : 272 pages
Book Rating : 4.4/5 (7 download)

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Book Synopsis Immunoinformatics by : Gregory R. Bock

Download or read book Immunoinformatics written by Gregory R. Bock and published by John Wiley & Sons. This book was released on 2004-03-05 with total page 272 pages. Available in PDF, EPUB and Kindle. Book excerpt: The astounding diversity of the immune system and the complexity of its regulatory pathways makes immunology a combinatorial science. Computational analysis has therefore become an essential element of immunology research and this has led to the creation of the emerging field of immunoinformatics. This book is the first to feature thorough coverage of this new field. Immunoinformatics facilitates the understanding of immune function by modelling the interactions among immunological components. Biological research provides ever deeper insights into the complexity of living organisms while computer science provides an effective means to store and analyse large volumes of complex data. Combining the two fields increases the efficiency of biological research and offers the potential for major advances in the study of biological systems. This book encompasses key developments in immunoinformatics, including immunological databases, sequence analysis, structure modelling, mathematical modelling of the immune system, simulation of laboratory experiments, statistical support for immunological experimentation and immunogenomics. The difficulties in effective application of bioinformatic tools in immunology arise at both ends of the spectrum: most immunologists have only a limited comprehension of sophisticated data analysis and applicability and limitations, while the average computer scientist lacks knowledge of the depth and complexity of biological data. The purpose of this book, therefore, is to present contributions from a multidisciplinary team of biologists and computer scientists to explore the issues related to better understanding of immune function and, in particular, to help apply new computer science methods to immunological research. Related Novartis Foundation symposia: 247 In Silico Simulation of Biological Processes Chair: Denis Noble 252 Generation and effector functions of regulatory lymphocytes Chair: Jean-François Bach

The Science and Applications of Synthetic and Systems Biology

Author : Institute of Medicine
Publisher : National Academies Press
ISBN 13 : 0309219396
Total Pages : 570 pages
Book Rating : 4.3/5 (92 download)

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Book Synopsis The Science and Applications of Synthetic and Systems Biology by : Institute of Medicine

Download or read book The Science and Applications of Synthetic and Systems Biology written by Institute of Medicine and published by National Academies Press. This book was released on 2011-12-30 with total page 570 pages. Available in PDF, EPUB and Kindle. Book excerpt: Many potential applications of synthetic and systems biology are relevant to the challenges associated with the detection, surveillance, and responses to emerging and re-emerging infectious diseases. On March 14 and 15, 2011, the Institute of Medicine's (IOM's) Forum on Microbial Threats convened a public workshop in Washington, DC, to explore the current state of the science of synthetic biology, including its dependency on systems biology; discussed the different approaches that scientists are taking to engineer, or reengineer, biological systems; and discussed how the tools and approaches of synthetic and systems biology were being applied to mitigate the risks associated with emerging infectious diseases. The Science and Applications of Synthetic and Systems Biology is organized into sections as a topic-by-topic distillation of the presentations and discussions that took place at the workshop. Its purpose is to present information from relevant experience, to delineate a range of pivotal issues and their respective challenges, and to offer differing perspectives on the topic as discussed and described by the workshop participants. This report also includes a collection of individually authored papers and commentary.

A Survey of Models for Tumor-immune System Dynamics

Author : John A. Adam
Publisher : Birkhauser
ISBN 13 : 9783764339012
Total Pages : 344 pages
Book Rating : 4.3/5 (39 download)

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Book Synopsis A Survey of Models for Tumor-immune System Dynamics by : John A. Adam

Download or read book A Survey of Models for Tumor-immune System Dynamics written by John A. Adam and published by Birkhauser. This book was released on 1997-01-01 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: This unique book is a collection of seven interdisciplinary surveys on modeling tumor dynamics and interactions between tumors and immune system. The goal is to provide an accessible, comprehensive report on the field and to help define a framework for future interdisciplinary research activity. Modeling and simulation of general behaviors of immune systems are also discussed. Each survey carefully covers a specialized field and provides a detailed description of the present state-of-the-art in research. The reader will be able to obtain essential information on the methodological approach used and on the models that are categorized and used. The book is an excellent resource and survey for applied mathematicians, mathematical biologists and biologists interested in modeling methods in immunology and related sciences.

Immunological Computation

Author : Dipankar Dasgupta
Publisher : CRC Press
ISBN 13 : 9781420065466
Total Pages : 296 pages
Book Rating : 4.0/5 (654 download)

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Book Synopsis Immunological Computation by : Dipankar Dasgupta

Download or read book Immunological Computation written by Dipankar Dasgupta and published by CRC Press. This book was released on 2008-09-12 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: Clearly, nature has been very effective in creating organisms that are capable of protecting themselves against a wide variety of pathogens such as bacteria, fungi, and parasites. The powerful information-processing capabilities of the immune system, such as feature extraction, pattern recognition, learning, memory, and its distributive nature provide rich metaphors that researchers are finding very useful for the development of computational models. While some of these models are designed to give us a better understanding of the immune system, other models are being developed to solve complex real-world problems such as anomaly detection, pattern recognition, data analysis (clustering), function optimization, and computer security. Immunological Computation: Theory and Applications is devoted to discussing different immunological mechanisms and their relation to information processing and problem solving. This unique volume presents a compendium of up-to-date work related to immunity-based techniques. After presenting the general abstractions of immune elements and processes used in computational models, it then— Reviews standard procedures, representations, and matching rules that are used in all immunological computation models Covers the details of one of the earliest and most well-known immune algorithms, based on the negative selection (NS) process that occurs in the thymus Examines promising immune models, including those based on danger theory, cytokine network models, and MHC-based models The text goes further to describe a wide variety of applications, which include computer security, the detection and analysis of anomalies and faults, robotics, and data mining among others. To enhance understanding of this emerging field of study, each chapter includes a summary, review questions, and exercises for readers to practice; as well as issues that will require future research.

Immunoinformatics

Author : Namrata Tomar
Publisher : Humana
ISBN 13 : 9781071603918
Total Pages : 409 pages
Book Rating : 4.6/5 (39 download)

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Book Synopsis Immunoinformatics by : Namrata Tomar

Download or read book Immunoinformatics written by Namrata Tomar and published by Humana. This book was released on 2021-03-26 with total page 409 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers a wide range of diverse immunoinformatics research topics, involving tools and databases of potential epitope prediction, HLA gene analysis, MHC characterizing, in silico vaccine design, mathematical modeling of host-pathogen interactions, and network analysis of immune system data. In that way, this fully updated volume explores the enormous value of computational tools and models in immunology research. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of key insights and detailed implementation advice to encourage successful results in the lab. Authoritative and practical, Immunoinformatics, Third Edition serves as an ideal guide for scientists working at the intersection of bioinformatics, mathematical modelling, and statistics for the study of immune systems biology.

Janeway's Immunobiology

Author : Kenneth Murphy
Publisher : Garland Science
ISBN 13 : 9780815344575
Total Pages : pages
Book Rating : 4.3/5 (445 download)

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Book Synopsis Janeway's Immunobiology by : Kenneth Murphy

Download or read book Janeway's Immunobiology written by Kenneth Murphy and published by Garland Science. This book was released on 2010-06-22 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: The Janeway's Immunobiology CD-ROM, Immunobiology Interactive, is included with each book, and can be purchased separately. It contains animations and videos with voiceover narration, as well as the figures from the text for presentation purposes.

Limiting Dilution Analysis of Cells of the Immune System

Author : Ivan Lefkovits
Publisher :
ISBN 13 :
Total Pages : 312 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis Limiting Dilution Analysis of Cells of the Immune System by : Ivan Lefkovits

Download or read book Limiting Dilution Analysis of Cells of the Immune System written by Ivan Lefkovits and published by . This book was released on 1999 with total page 312 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new edition is an extensive treatise on the rationale of limiting dilution analysis (LDA). LDA has evolved from its previous role as a basic research laboratory tool in virology and immunology to one pertaining to many different research disciplines and to clinical applications. Newmethodologies (such as PCR, confocal microscopy, in situ hybridisation) have emerged, with the result that single-cell assays can now be performed on a more defined basis, and the quantitation of cells and their precursors is now more accessible to the limiting dilution approach. This book includesboth detailed mathematical derivations and methodological descriptions so that the uninitiated scientist can set up and evaluate limiting dilution experiments without further instruction. It also describes particular examples of how LDA is being used to determine clinical practice. The secondedition of this highly successful book, which has been on the shelf of every modern immunology laboratory for the last two decades, retains the same overall structure of the first edition, with one important addition - an extensive LDA software package. The LDA program and the simulation softwarewill be linked to a web site to ensure updates at regular intervals. The first edition was written primarily for immunologists, but this volume has been expanded so that it will be useful to a broader audience in microbiology, pathology, virology and cellular biology. Furthermore, this volume isintended to be used as additional reading for students of biology and medicine whose knowledge of the applications of Poisson distribution need refreshing.