Genotyping By Sequencing For Crop Improvement

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Genotyping by Sequencing for Crop Improvement

Author : Humira Sonah
Publisher : John Wiley & Sons
ISBN 13 : 1119745675
Total Pages : 404 pages
Book Rating : 4.1/5 (197 download)

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Book Synopsis Genotyping by Sequencing for Crop Improvement by : Humira Sonah

Download or read book Genotyping by Sequencing for Crop Improvement written by Humira Sonah and published by John Wiley & Sons. This book was released on 2022-03-29 with total page 404 pages. Available in PDF, EPUB and Kindle. Book excerpt: OGENOTYPING BY SEQUENCING FOR CROP IMPROVEMENT A thoroughly up-to-date exploration of genotyping-by-sequencing technologies and related methods in plant science In Genotyping by Sequencing for Crop Improvement, a team of distinguished researchers delivers an in-depth and current exploration of the latest advances in genotyping-by-sequencing (GBS) methods, the statistical approaches used to analyze GBS data, and its applications, including quantitative trait loci (QTL) mapping, genome-wide association studies (GWAS), and genomic selection (GS) in crop improvement. This edited volume includes insightful contributions on a variety of relevant topics, like advanced molecular markers, high-throughput genotyping platforms, whole genome resequencing, QTL mapping with advanced mapping populations, analytical pipelines for GBS analysis, and more. The distinguished contributors explore traditional and advanced markers used in plant genotyping in extensive detail, and advanced genotyping platforms that cater to unique research purposes are discussed, as is the whole-genome resequencing (WGR) methodology. The included chapters also examine the applications of these technologies in several different crop categories, including cereals, pulses, oilseeds, and commercial crops. Genotyping by Sequencing for Crop Improvement also offers: A thorough introduction to molecular marker techniques and recent advancements in the technology Comprehensive explorations of the genotyping of seeds while preserving their viability, as well as advances in genomic selection Practical discussions of opportunities and challenges relating to high throughput genotyping in polyploid crops In-depth examinations of recent advances and applications of GBS, GWAS, and GS in cereals, pulses, oilseeds, millets, and commercial crops Perfect for practicing plant scientists with an interest in genotyping-by-sequencing technology, Genotyping by Sequencing for Crop Improvement will also earn a place in the libraries of researchers and students seeking a one-stop reference on the foundational aspects of – and recent advances in – genotyping-by-sequencing, genome-wide association studies, and genomic selection.

Mathematical Models in Biology

Author : Valeria Zazzu
Publisher : Springer
ISBN 13 : 3319234978
Total Pages : 199 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Mathematical Models in Biology by : Valeria Zazzu

Download or read book Mathematical Models in Biology written by Valeria Zazzu and published by Springer. This book was released on 2015-11-26 with total page 199 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents an exciting collection of contributions based on the workshop “Bringing Maths to Life” held October 27-29, 2014 in Naples, Italy. The state-of-the art research in biology and the statistical and analytical challenges facing huge masses of data collection are treated in this Work. Specific topics explored in depth surround the sessions and special invited sessions of the workshop and include genetic variability via differential expression, molecular dynamics and modeling, complex biological systems viewed from quantitative models, and microscopy images processing, to name several. In depth discussions of the mathematical analysis required to extract insights from complex bodies of biological datasets, to aid development in the field novel algorithms, methods and software tools for genetic variability, molecular dynamics, and complex biological systems are presented in this book. Researchers and graduate students in biology, life science, and mathematics/statistics will find the content useful as it addresses existing challenges in identifying the gaps between mathematical modeling and biological research. The shared solutions will aid and promote further collaboration between life sciences and mathematics.

Next Generation Sequencing

Author : Jerzy Kulski
Publisher : BoD – Books on Demand
ISBN 13 : 9535122401
Total Pages : 466 pages
Book Rating : 4.5/5 (351 download)

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Book Synopsis Next Generation Sequencing by : Jerzy Kulski

Download or read book Next Generation Sequencing written by Jerzy Kulski and published by BoD – Books on Demand. This book was released on 2016-01-14 with total page 466 pages. Available in PDF, EPUB and Kindle. Book excerpt: Next generation sequencing (NGS) has surpassed the traditional Sanger sequencing method to become the main choice for large-scale, genome-wide sequencing studies with ultra-high-throughput production and a huge reduction in costs. The NGS technologies have had enormous impact on the studies of structural and functional genomics in all the life sciences. In this book, Next Generation Sequencing Advances, Applications and Challenges, the sixteen chapters written by experts cover various aspects of NGS including genomics, transcriptomics and methylomics, the sequencing platforms, and the bioinformatics challenges in processing and analysing huge amounts of sequencing data. Following an overview of the evolution of NGS in the brave new world of omics, the book examines the advances and challenges of NGS applications in basic and applied research on microorganisms, agricultural plants and humans. This book is of value to all who are interested in DNA sequencing and bioinformatics across all fields of the life sciences.

Plant Breeding: Past, Present and Future

Author : John E. Bradshaw
Publisher : Springer
ISBN 13 : 3319232851
Total Pages : 693 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Plant Breeding: Past, Present and Future by : John E. Bradshaw

Download or read book Plant Breeding: Past, Present and Future written by John E. Bradshaw and published by Springer. This book was released on 2016-03-08 with total page 693 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to help plant breeders by reviewing past achievements, currently successful practices, and emerging methods and techniques. Theoretical considerations are also presented to strike the right balance between being as simple as possible but as complex as necessary. The United Nations predicts that the global human population will continue rising to 9.0 billion by 2050. World food production will need to increase between 70-100 per cent in just 40 years. First generation bio-fuels are also using crops and cropland to produce energy rather than food. In addition, land area used for agriculture may remain static or even decrease as a result of degradation and climate change, despite more land being theoretically available, unless crops can be bred which tolerate associated abiotic stresses. Lastly, it is unlikely that steps can be taken to mitigate all of the climate change predicted to occur by 2050, and beyond, and hence adaptation of farming systems and crop production will be required to reduce predicted negative effects on yields that will occur without crop adaptation. Substantial progress will therefore be required in bridging the yield gap between what is currently achieved per unit of land and what should be possible in future, with the best farming methods and best storage and transportation of food, given the availability of suitably adapted cultivars, including adaptation to climate change. My book is divided into four parts: Part I is an historical introduction; Part II deals with the origin of genetic variation by mutation and recombination of DNA; Part III explains how the mating system of a crop species determines the genetic structure of its landraces; Part IV considers the three complementary options for future progress: use of sexual reproduction in further conventional breeding, base broadening and introgression; mutation breeding; and genetically modified crops.

Genomic Selection for Crop Improvement

Author : Rajeev K. Varshney
Publisher : Springer
ISBN 13 : 3319631705
Total Pages : 258 pages
Book Rating : 4.3/5 (196 download)

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Book Synopsis Genomic Selection for Crop Improvement by : Rajeev K. Varshney

Download or read book Genomic Selection for Crop Improvement written by Rajeev K. Varshney and published by Springer. This book was released on 2017-12-05 with total page 258 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genomic Selection for Crop Improvement serves as handbook for users by providing basic as well as advanced understandings of genomic selection. This useful review explains germplasm use, phenotyping evaluation, marker genotyping methods, and statistical models involved in genomic selection. It also includes examples of ongoing activities of genomic selection for crop improvement and efforts initiated to deploy the genomic selection in some important crops. In order to understand the potential of GS breeding, it is high time to bring complete information in the form of a book that can serve as a ready reference for geneticist and plant breeders.

Molecular Marker Technology for Crop Improvement

Author : José Miguel Soriano
Publisher : MDPI
ISBN 13 : 3039438638
Total Pages : 302 pages
Book Rating : 4.0/5 (394 download)

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Book Synopsis Molecular Marker Technology for Crop Improvement by : José Miguel Soriano

Download or read book Molecular Marker Technology for Crop Improvement written by José Miguel Soriano and published by MDPI. This book was released on 2021-01-15 with total page 302 pages. Available in PDF, EPUB and Kindle. Book excerpt: Since the 1980s, agriculture and plant breeding have changed with the development of molecular marker technology. In recent decades, different types of molecular markers have been used for different purposes: mapping, marker-assisted selection, characterization of genetic resources, etc. These have produced effective genotyping, but the results have been costly and time-consuming due to the small number of markers that could be tested simultaneously. Recent advances in molecular marker technologies such as the development of high-throughput genotyping platforms, genotyping by sequencing, and the release of the genome sequences of major crop plants have opened new possibilities for advancing crop improvement. This Special Issue collects 16 research studies, including the application of molecular markers in 11 crop species, from the generation of linkage maps and diversity studies to the application of marker-assisted selection and genomic prediction.

Plant Genotyping

Author : Jacqueline Batley
Publisher : Humana
ISBN 13 : 9781493943678
Total Pages : 0 pages
Book Rating : 4.9/5 (436 download)

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Book Synopsis Plant Genotyping by : Jacqueline Batley

Download or read book Plant Genotyping written by Jacqueline Batley and published by Humana. This book was released on 2016-08-23 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The ability to produce vast amounts of DNA sequence data has enabled the discovery of molecular markers in model organisms, crops, as well as orphan species making genotyping the rate limiting factor, and this volume focuses on the different markers available and the low to high throughput genotyping of these markers. Given the diverse nature of some of these systems, an overview is provided on the identification of markers from sequence data, as well as data analysis with example applications once the genotyping data has been generated. Written in the successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible protocols, and notes on troubleshooting and avoiding known pitfalls. Authoritative and easily accessible, Plant Genotyping: Methods and Protocols is aimed at plant molecular biologists, geneticists, plant breeders and ecologists who have a target question and need to know the most suitable markers and genotyping system to use.

The Barley Genome

Author : Nils Stein
Publisher : Springer
ISBN 13 : 3319925288
Total Pages : 394 pages
Book Rating : 4.3/5 (199 download)

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Book Synopsis The Barley Genome by : Nils Stein

Download or read book The Barley Genome written by Nils Stein and published by Springer. This book was released on 2018-08-18 with total page 394 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents an overview of the state-of-the-art in barley genome analysis, covering all aspects of sequencing the genome and translating this important information into new knowledge in basic and applied crop plant biology and new tools for research and crop improvement. Unlimited access to a high-quality reference sequence is removing one of the major constraints in basic and applied research. This book summarizes the advanced knowledge of the composition of the barley genome, its genes and the much larger non-coding part of the genome, and how this information facilitates studying the specific characteristics of barley. One of the oldest domesticated crops, barley is the small grain cereal species that is best adapted to the highest altitudes and latitudes, and it exhibits the greatest tolerance to most abiotic stresses. With comprehensive access to the genome sequence, barley’s importance as a genetic model in comparative studies on crop species like wheat, rye, oats and even rice is likely to increase.

Genomics Data Analysis for Crop Improvement

Author : Priyanka Anjoy
Publisher : Springer Nature
ISBN 13 : 9819969131
Total Pages : 378 pages
Book Rating : 4.8/5 (199 download)

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Book Synopsis Genomics Data Analysis for Crop Improvement by : Priyanka Anjoy

Download or read book Genomics Data Analysis for Crop Improvement written by Priyanka Anjoy and published by Springer Nature. This book was released on 2024-02-10 with total page 378 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book addresses complex problems associated with crop improvement programs, using a wide range of programming solutions, for genomics data handling and sustainable agriculture. It describes important concepts in genomics data analysis and sequence-based mapping approaches along with references. The book contains 16 chapters on recent developments in several methods of genomic data analysis for crop improvements and sustainable agriculture, all authored by eminent researchers who are experts in their fields. These chapters focus on applications of a wide range of key bioinformatics topics, including assembly, annotation, and visualization of next-generation sequencing (NGS) data; expression profiles of coding and noncoding RNA; statistical and quantitative genetics; trait-based association analysis, quantitative trait loci (QTL) mapping, and artificial intelligence in genomic studies. Real examples and case studies in the book will come in handy when applying the techniques. The relative scarcity of reference materials covering bioinformatics applications as compared with the readily available books also enhances the utility of this book. The targeted readers of the book are scientists, researchers, and bioinformaticians from genomics and advanced breeding in different areas. The book will appeal to the applied researchers engaged in crop improvements and sustainable agriculture by using bioinformatics tools, students, research project leaders, and practitioners from the various marginal disciplines and interdisciplinary research.

Genomics of Cereal Crops

Author : Shabir Hussain Wani
Publisher : Springer Nature
ISBN 13 : 1071625330
Total Pages : 366 pages
Book Rating : 4.0/5 (716 download)

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Book Synopsis Genomics of Cereal Crops by : Shabir Hussain Wani

Download or read book Genomics of Cereal Crops written by Shabir Hussain Wani and published by Springer Nature. This book was released on 2022-06-13 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume details different genomic methods and resources to explore cereal genomics. Chapters guide readers through crop genomes, Next Generation Sequencing (NGS) technologies, protocol for CRISPR editing, transgenic wheat, NGS approach, virus induced gene silencing (VIGS), genomic tools, computational prediction of ncRNAs (miRNAs & ceRNAs) in cereal crops, genotyping-by-sequencing (GBS), Bayesian method, single cell sequencing, genome-wide association study (GWAS), QTL interval mapping, whole genome bisulfite sequencing, genome imprinting, and methods for study the receptor-metabolite interaction. Authoritative and cutting-edge, Genomics of Cereal Crops aims to be a useful and practical guide to new researchers and experts looking to expand their knowledge.

Molecular Genetics, Genomics and Biotechnology of Crop Plants Breeding

Author : Søren K. Rasmussen
Publisher : MDPI
ISBN 13 : 3039288776
Total Pages : 238 pages
Book Rating : 4.0/5 (392 download)

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Book Synopsis Molecular Genetics, Genomics and Biotechnology of Crop Plants Breeding by : Søren K. Rasmussen

Download or read book Molecular Genetics, Genomics and Biotechnology of Crop Plants Breeding written by Søren K. Rasmussen and published by MDPI. This book was released on 2020-05-27 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: This Special Issue on molecular genetics, genomics, and biotechnology in crop plant breeding seeks to encourage the use of the tools currently available. It features nine research papers that address quality traits, grain yield, and mutations by exploring cytoplasmic male sterility, the delicate control of flowering in rice, the removal of anti-nutritional factors, the use and development of new technologies for non-model species marker technology, site-directed mutagenesis and GMO regulation, genomics selection and genome-wide association studies, how to cope with abiotic stress, and an exploration of fruit trees adapted to harsh environments for breeding purposes. A further four papers review the genetics of pre-harvest spouting, readiness for climate-smart crop development, genomic selection in the breeding of cereal crops, and the large numbers of mutants in straw lignin biosynthesis and deposition.

Oil Crop Genomics

Author : Huseyin Tombuloglu
Publisher : Springer Nature
ISBN 13 : 3030704203
Total Pages : 444 pages
Book Rating : 4.0/5 (37 download)

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Book Synopsis Oil Crop Genomics by : Huseyin Tombuloglu

Download or read book Oil Crop Genomics written by Huseyin Tombuloglu and published by Springer Nature. This book was released on 2021-09-20 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plants are an important source of fats and oils, which are essential for the human diet. In recent years, genomics of oil biosynthesis in plants have attracted great interest, especially in high oil-bearing plants, such as sesame, olive, sunflower, and palm. Considering that, genome sequencing projects of these plants have been undertaken with the help of advanced genomics tools such as next generation sequencing. Several genome sequencing projects of oil crops are in progress and many others are en route. In addition to genome information, advanced genomics approaches are discussed such as transcriptomics, genomics-assisted breeding, genome-wide association study (GWAS), genotyping by sequencing (GBS), and CRISPR. These have all improved our understanding of the oil biosynthesis mechanism and breeding strategies for oil production. There is, however, no book that covers the genomes and genomics of oil crops. For this reason, in this volume we collected the most recent knowledge of oil crop genomics for researchers who study oil crop genomes, genomics, biotechnology, pharmacology, and medicine. This book covers all genome-sequenced oil crops as well as the plants producing important oil metabolites. Throughout this book, the latest genomics developments and discoveries are highlighted as well as open problems and future challenges in oil crop genomics. In doing so, we have covered the state-of-the-art of developments and trends of oil crop genomics.

Genomic Designing for Biotic Stress Resistant Cereal Crops

Author : Chittaranjan Kole
Publisher : Springer Nature
ISBN 13 : 3030758796
Total Pages : 340 pages
Book Rating : 4.0/5 (37 download)

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Book Synopsis Genomic Designing for Biotic Stress Resistant Cereal Crops by : Chittaranjan Kole

Download or read book Genomic Designing for Biotic Stress Resistant Cereal Crops written by Chittaranjan Kole and published by Springer Nature. This book was released on 2021-08-31 with total page 340 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents deliberations on molecular and genomic mechanisms underlying the interactions of crop plants to the biotic stresses caused by different diseases and pests that are important to develop resistant crop varieties. Knowledge on the advanced genetic and genomic crop improvement strategies including molecular breeding, transgenics, genomic-assisted breeding, and the recently emerging genome editing for developing resistant varieties in cereal crops is imperative for addressing FHNEE (food, health, nutrition, energy, and environment) security. Whole genome sequencing of these crops followed by genotyping-by-sequencing has provided precise information regarding the genes conferring resistance useful for gene discovery, allele mining, and shuttle breeding which in turn opened up the scope for 'designing' crop genomes with resistance to biotic stresses. The eight chapters each dedicated to a cereal crop in this volume elucidate on different types of biotic stresses and their effects on and interaction with the crop; enumerate on the available genetic diversity with regard to biotic stress resistance among available cultivars; illuminate on the potential gene pools for utilization in interspecific gene transfer; present brief on classical genetics of stress resistance and traditional breeding for transferring them to their cultivated counterparts; depict the success stories of genetic engineering for developing biotic stress-resistant crop varieties; discuss on molecular mapping of genes and QTLs underlying stress resistance and their marker-assisted introgression into elite varieties; enunciate on different genomics-aided techniques including genomic selection, allele mining, gene discovery, and gene pyramiding for developing adaptive crop varieties with higher quantity and quality of yields, and also elaborate some case studies on genome editing focusing on specific genes for generating biotic stress-resistant crops.

Genome Engineering for Crop Improvement

Author : Bidyut Kumar Sarmah
Publisher : Springer Nature
ISBN 13 : 3030633721
Total Pages : 277 pages
Book Rating : 4.0/5 (36 download)

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Book Synopsis Genome Engineering for Crop Improvement by : Bidyut Kumar Sarmah

Download or read book Genome Engineering for Crop Improvement written by Bidyut Kumar Sarmah and published by Springer Nature. This book was released on 2021-04-18 with total page 277 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book serves the teachers, researchers and the students as a handy and concise reference as well as guidebook while designing and planning for use of the advanced technologies for crop improvement. The content of the book is designed to cover the latest genome engineering techniques for crop improvement. The conventional breeding has got its limitations such as non-availability of desired genes within the genepool. In many cases, breeding has been highly used and it has nearly reached its highest limit so far as the productivity and production of crops are concerned. However, with increasing need of food and decreasing resources, including water, land, labour, etc., to feed the growing population, the alternative available ways of increasing crop productivity need to be explored and exploited. Genome engineering has a wide scope that includes technologies such as genetic engineering and transgenesis, RNA technologies, CRISPR, cisgenics and subgenics for better productivity and more efficient biotic and abiotic stress management. Therefore, the book is planned to enlighten the readers with the advanced technologies with examples and case studies, whenever possible. Efforts will be made to emphasize on general efforts on various major food crops; however, it would also be made clear that such efforts could be taken as proofs of concepts and that this could be extrapolated keeping the demand in mind.

Plant Genetics and Molecular Biology

Author : Rajeev K. Varshney
Publisher : Springer
ISBN 13 : 3319913131
Total Pages : 298 pages
Book Rating : 4.3/5 (199 download)

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Book Synopsis Plant Genetics and Molecular Biology by : Rajeev K. Varshney

Download or read book Plant Genetics and Molecular Biology written by Rajeev K. Varshney and published by Springer. This book was released on 2018-09-04 with total page 298 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book reviews the latest advances in multiple fields of plant biotechnology and the opportunities that plant genetics, genomics and molecular biology have offered for agriculture improvement. Advanced technologies can dramatically enhance our capacity in understanding the molecular basis of traits and utilizing the available resources for accelerated development of high yielding, nutritious, input-use efficient and climate-smart crop varieties. In this book, readers will discover the significant advances in plant genetics, structural and functional genomics, trait and gene discovery, transcriptomics, proteomics, metabolomics, epigenomics, nanotechnology and analytical & decision support tools in breeding. This book appeals to researchers, academics and other stakeholders of global agriculture.

Molecular Breeding of Forage Crops

Author : German Spangenberg
Publisher : Springer Science & Business Media
ISBN 13 : 9401597006
Total Pages : 345 pages
Book Rating : 4.4/5 (15 download)

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Book Synopsis Molecular Breeding of Forage Crops by : German Spangenberg

Download or read book Molecular Breeding of Forage Crops written by German Spangenberg and published by Springer Science & Business Media. This book was released on 2013-04-17 with total page 345 pages. Available in PDF, EPUB and Kindle. Book excerpt: Forage plant breeding has entered the genome era. This timely book reviews the latest advances in the development and application of molecular technologies which supplement conventional breeding efforts for our major forage crops. It describes the plethora of new technologies and tools now available for high-throughput gene discovery, genome-wide gene expression analysis, production of transgenic plants, genome analysis and marker-assisted selection as applied to forage plants. Detailed accounts are presented of current and future opportunities for innovative applications of these molecular tools and technologies in the identification, functional characterisation, and use of valuable genes in forage production systems and beyond. This book represents a valuable resource for plant breeders, geneticists, and molecular biologists, and will be of particular relevance to advanced undergraduates, postgraduates, and researchers with an interest in forage legumes and grasses.

Genetics, Genomics, and Breeding of Tomato

Author : Barbara E. Liedl
Publisher : CRC Press
ISBN 13 : 1578088046
Total Pages : 522 pages
Book Rating : 4.5/5 (78 download)

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Book Synopsis Genetics, Genomics, and Breeding of Tomato by : Barbara E. Liedl

Download or read book Genetics, Genomics, and Breeding of Tomato written by Barbara E. Liedl and published by CRC Press. This book was released on 2013-01-17 with total page 522 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume covers the advances in the study of tomato diversity and taxonomy. It examines the mapping of simple and complex traits, classical genetics and breeding, association studies, molecular breeding, positional cloning, and structural and comparative genomics. The contributors also discuss transcriptomics, proteomics, metabolomics, and bioinformatics. The information in this book will be useful to researchers working on other Solanaceaous crops as well as those interested in using the tomato as a model crop species.