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Dynamic Biological Networks
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Book Synopsis Dynamic Biological Networks by : Ronald M. Harris-Warrick
Download or read book Dynamic Biological Networks written by Ronald M. Harris-Warrick and published by MIT Press. This book was released on 1992 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: This introduction to the crustacean stomatogastric nervous system (STNS) describes some of the best-understood neural networks in the animal kingdom at cellular, network, behavioural, comparative and evolutionary levels of analysis.
Book Synopsis Handbook on Biological Networks by : Stefano Boccaletti
Download or read book Handbook on Biological Networks written by Stefano Boccaletti and published by World Scientific. This book was released on 2010 with total page 465 pages. Available in PDF, EPUB and Kindle. Book excerpt: Networked systems are all around us. The accumulated evidence of systems as complex as a cell cannot be fully understood by studying only their isolated constituents, giving rise to a new area of interest in research ? the study of complex networks. In a broad sense, biological networks have been one of the most studied networks, and the field has benefited from many important contributions. By understanding and modeling the structure of a biological network, a better perception of its dynamical and functional behavior is to be expected. This unique book compiles the most relevant results and novel insights provided by network theory in the biological sciences, ranging from the structure and dynamics of the brain to cellular and protein networks and to population-level biology.
Book Synopsis The Dynamics of Biological Systems by : Arianna Bianchi
Download or read book The Dynamics of Biological Systems written by Arianna Bianchi and published by Springer Nature. This book was released on 2019-10-02 with total page 267 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book presents nine mini-courses from a summer school, Dynamics of Biological Systems, held at the University of Alberta in 2016, as part of the prestigious seminar series: Séminaire de Mathématiques Supérieures (SMS). It includes new and significant contributions in the field of Dynamical Systems and their applications in Biology, Ecology, and Medicine. The chapters of this book cover a wide range of mathematical methods and biological applications. They - explain the process of mathematical modelling of biological systems with many examples, - introduce advanced methods from dynamical systems theory, - present many examples of the use of mathematical modelling to gain biological insight - discuss innovative methods for the analysis of biological processes, - contain extensive lists of references, which allow interested readers to continue the research on their own. Integrating the theory of dynamical systems with biological modelling, the book will appeal to researchers and graduate students in Applied Mathematics and Life Sciences.
Book Synopsis Systems Biology: Simulation of Dynamic Network States by : Bernhard Ø. Palsson
Download or read book Systems Biology: Simulation of Dynamic Network States written by Bernhard Ø. Palsson and published by Cambridge University Press. This book was released on 2011-05-26 with total page 333 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biophysical models have been used in biology for decades, but they have been limited in scope and size. In this book, Bernhard Ø. Palsson shows how network reconstructions that are based on genomic and bibliomic data, and take the form of established stoichiometric matrices, can be converted into dynamic models using metabolomic and fluxomic data. The Mass Action Stoichiometric Simulation (MASS) procedure can be used for any cellular process for which data is available and allows a scalable step-by-step approach to the practical construction of network models. Specifically, it can treat integrated processes that need explicit accounting of small molecules and protein, which allows simulation at the molecular level. The material has been class-tested by the author at both the undergraduate and graduate level. All computations in the text are available online in MATLAB® and Mathematica® workbooks, allowing hands-on practice with the material.
Book Synopsis Biological Networks by : Franois Kps
Download or read book Biological Networks written by Franois Kps and published by World Scientific. This book was released on 2007 with total page 531 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume presents a timely and comprehensive overview of biological networks at all organization levels in the spirit of the complex system approach. It discusses the transversal issues and fundamental principles as well as the overall structure, dynamics, and modeling of a wide array of biological networks at the molecular, cellular, and population levels. Anchored in both empirical data and a strong theoretical background, the book therefore lends valuable credence to the complex systems approach.
Book Synopsis Dynamics of Biological Systems by : Michael Small
Download or read book Dynamics of Biological Systems written by Michael Small and published by CRC Press. This book was released on 2011-08-25 with total page 286 pages. Available in PDF, EPUB and Kindle. Book excerpt: From the spontaneous rapid firing of cortical neurons to the spatial diffusion of disease epidemics, biological systems exhibit rich dynamic behaviour over a vast range of time and space scales. Unifying many of these diverse phenomena, Dynamics of Biological Systems provides the computational and mathematical platform from which to understand the underlying processes of the phenomena. Through an extensive tour of various biological systems, the text introduces computational methods for simulating spatial diffusion processes in excitable media, such as the human heart, as well as mathematical tools for dealing with systems of nonlinear ordinary and partial differential equations, such as neuronal activation and disease diffusion. The mathematical models and computer simulations offer insight into the dynamics of temporal and spatial biological systems, including cardiac pacemakers, artificial electrical defibrillation, pandemics, pattern formation, flocking behaviour, the interaction of autonomous agents, and hierarchical and structured network topologies. Tools from complex systems and complex networks are also presented for dealing with real phenomenological systems. With exercises and projects in each chapter, this classroom-tested text shows students how to apply a variety of mathematical and computational techniques to model and analyze the temporal and spatial phenomena of biological systems. MATLAB® implementations of algorithms and case studies are available on the author’s website.
Book Synopsis Biological Network Analysis by : Pietro Hiram Guzzi
Download or read book Biological Network Analysis written by Pietro Hiram Guzzi and published by Elsevier. This book was released on 2020-05-11 with total page 212 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological Network Analysis: Trends, Approaches, Graph Theory, and Algorithms considers three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN), and Human Brain Connectomes. The book's authors discuss various graph theoretic and data analytics approaches used to analyze these networks with respect to available tools, technologies, standards, algorithms and databases for generating, representing and analyzing graphical data. As a wide variety of algorithms have been developed to analyze and compare networks, this book is a timely resource. Presents recent advances in biological network analysis, combining Graph Theory, Graph Analysis, and various network models Discusses three major biological networks, including Gene Regulatory Networks (GRN), Protein-Protein Interaction Networks (PPIN) and Human Brain Connectomes Includes a discussion of various graph theoretic and data analytics approaches
Book Synopsis Handbook on Biological Networks by : Stefano Boccaletti
Download or read book Handbook on Biological Networks written by Stefano Boccaletti and published by World Scientific. This book was released on 2010 with total page 465 pages. Available in PDF, EPUB and Kindle. Book excerpt: Networked systems are all around us. The accumulated evidence of systems as complex as a cell cannot be fully understood by studying only their isolated constituents, giving rise to a new area of interest in research OCo the study of complex networks . In a broad sense, biological networks have been one of the most studied networks, and the field has benefited from many important contributions. By understanding and modeling the structure of a biological network, a better perception of its dynamical and functional behavior is to be expected. This unique book compiles the most relevant results and novel insights provided by network theory in the biological sciences, ranging from the structure and dynamics of the brain to cellular and protein networks and to population-level biology. Sample Chapter(s). Chapter 1: Introduction (61 KB). Contents: Networks at the Cellular Level: The Structural Network Properties of Biological Systems (M Brilli & P Li); Dynamics of Multicellular Synthetic Gene Networks (E Ullner et al.); Boolean Networks in Inference and Dynamic Modeling of Biological Systems at the Molecular and Physiological Level (J Thakar & R Albert); Complexity of Boolean Dynamics in Simple Models of Signaling Networks and in Real Genetic Networks (A D az-Guilera & R ulvarez-Buylla); Geometry and Topology of Folding Landscapes (L Bongini & L Casetti); Elastic Network Models for Biomolecular Dynamics: Theory and Application to Membrane Proteins and Viruses (T R Lezon et al.); Metabolic Networks (M C Palumbo et al.); Brain Networks: The Human Brain Network (O Sporns); Brain Network Analysis from High-Resolution EEG Signals (F De Vico Fallani & F Babiloni); An Optimization Approach to the Structure of the Neuronal layout of C elegans (A Arenas et al.); Cultured Neuronal Networks Express Complex Patterns of Activity and Morphological Memory (N Raichman et al.); Synchrony and Precise Timing in Complex Neural Networks (R-M Memmesheimer & M Timme); Networks at the Individual and Population Levels: Ideas for Moving Beyond Structure to Dynamics of Ecological Networks (D B Stouffer et al.); Evolutionary Models for Simple Biosystems (F Bagnoli); Evolution of Cooperation in Adaptive Social Networks (S Van Segbroeck et al.); From Animal Collectives and Complex Networks to Decentralized Motion Control Strategies (A Buscarino et al.); Interplay of Network State and Topology in Epidemic Dynamics (T Gross). Readership: Advanced undergraduates, graduate students and researchers interested in the study of complex networks in a wide range of biological processes and systems."
Book Synopsis Networks of Networks in Biology by : Narsis A. Kiani
Download or read book Networks of Networks in Biology written by Narsis A. Kiani and published by Cambridge University Press. This book was released on 2021-04 with total page 215 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduces network inspired approaches for the analysis and integration of large, heterogeneous data sets in the life sciences.
Book Synopsis Biological Networks by : Francois Kepes
Download or read book Biological Networks written by Francois Kepes and published by World Scientific. This book was released on 2007 with total page 531 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume presents a timely and comprehensive overview of biological networks at all organization levels in the spirit of the complex systems approach. It discusses the transversal issues and fundamental principles as well as the overall structure, dynamics, and modeling of a wide array of biological networks at the molecular, cellular, and population levels. Anchored in both empirical data and a strong theoretical background, the book therefore lends valuable credence to the complex systems approach. Sample Chapter(s). Chapter 1: Scale-Free Networks in Biology (821 KB). Contents: Scale-Free Networks in Biology (E Almaas et al.); Modularity in Biological Networks (R V Sol(r) et al.); Inference of Biological Regulatory Networks: Machine Learning Approaches (F d''Alch(r)-Buc); Transcriptional Networks (F K(r)p s); Protein Interaction Networks (K Tan & T Ideker); Metabolic Networks (D A Fell); Heterogeneous Molecular Networks (V Schnchter); Evolution of Regulatory Networks (A Veron et al.); Complexity in Neuronal Networks (Y Fr(r)gnac et al.); Networks of the Immune System (R E Callard & J Stark); A History of the Study of Ecological Networks (L-F Bersier); Dynamic Network Models of Ecological Diversity, Complexity, and Nonlinear Persistence (R J Williams & N D Martinez); Infection Transmission through Networks (J S Koopman). Readership: Graduate students and industry experts in systems biology and complex systems; biologists; chemists; physicists; mathematicians; computer scientists
Book Synopsis Dynamics On and Of Complex Networks by : Niloy Ganguly
Download or read book Dynamics On and Of Complex Networks written by Niloy Ganguly and published by Springer Science & Business Media. This book was released on 2009-04-14 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt: This self-contained book systematically explores the statistical dynamics on and of complex networks having relevance across a large number of scientific disciplines. The theories related to complex networks are increasingly being used by researchers for their usefulness in harnessing the most difficult problems of a particular discipline. The book is a collection of surveys and cutting-edge research contributions exploring the interdisciplinary relationship of dynamics on and of complex networks. Topics covered include complex networks found in nature—genetic pathways, ecological networks, linguistic systems, and social systems—as well as man-made systems such as the World Wide Web and peer-to-peer networks. The contributed chapters in this volume are intended to promote cross-fertilization in several research areas, and will be valuable to newcomers in the field, experienced researchers, practitioners, and graduate students interested in systems exhibiting an underlying complex network structure in disciplines such as computer science, biology, statistical physics, nonlinear dynamics, linguistics, and the social sciences.
Author :American Mathematical Society. Short Course, Modeling and Simulation of Biological Networks Publisher :American Mathematical Soc. ISBN 13 :9780821867693 Total Pages :172 pages Book Rating :4.8/5 (676 download)
Book Synopsis Modeling and Simulation of Biological Networks by : American Mathematical Society. Short Course, Modeling and Simulation of Biological Networks
Download or read book Modeling and Simulation of Biological Networks written by American Mathematical Society. Short Course, Modeling and Simulation of Biological Networks and published by American Mathematical Soc.. This book was released on 2007-08-21 with total page 172 pages. Available in PDF, EPUB and Kindle. Book excerpt: It is the task of computational biology to help elucidate the unique characteristics of biological systems. This process has barely begun, and many researchers are testing computational tools that have been used successfully in other fields. Mathematical and statistical network modeling is an important step toward uncovering the organizational principles and dynamic behavior of biological networks. Undoubtedly, new mathematical tools will be needed, however, to meet this challenge. The workhorse of this effort at present comprises the standard tools from applied mathematics, which have proven to be successful for many problems. But new areas of mathematics not traditionally considered applicable are contributing other powerful tools. This volume is intended to introduce this topic to a broad mathematical audience. The aim is to explain some of the biology and the computational and mathematical challenges we are facing. The different chapters provide examples of how these challenges are met, with particular emphasis on nontraditional mathematical approaches. The volume features a broad spectrum of networks across scales, ranging from biochemical networks within a single cell to epidemiological networks encompassing whole cities. Chapter topics include phylogenetics and gene finding using tools from statistics and algebraic geometry, biochemical network inference using tools from computational algebra, control-theoretic approaches to drug delivery using differential equations, and interaction-based modeling and discrete mathematics applied to problems in population dynamics and epidemiology.
Book Synopsis Computational Systems Biology by : Reinhard Laubenbacher
Download or read book Computational Systems Biology written by Reinhard Laubenbacher and published by Elsevier Inc. Chapters. This book was released on 2013-11-26 with total page 548 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematical and statistical network modeling is an important step toward uncovering the organizational principles and dynamic behavior of biological networks. This chapter focuses on methods to construct discrete dynamic models of gene regulatory networks from experimental data sets, also sometimes referred to as top-down modeling or reverse engineering. Time-discrete dynamical systems models have long been used in biology, particularly in population dynamics. The models mainly focused on here are also assumed to have a finite set of possible states for each variable. That is, the modeling framework discussed in this chapter is that of time-discrete dynamical systems over a finite state set.
Book Synopsis Self-Organized Biological Dynamics and Nonlinear Control by : Jan Walleczek
Download or read book Self-Organized Biological Dynamics and Nonlinear Control written by Jan Walleczek and published by Cambridge University Press. This book was released on 2006-04-20 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: The growing impact of nonlinear science on biology and medicine is fundamentally changing our view of living organisms and disease processes. This book introduces the application to biomedicine of a broad range of interdisciplinary concepts from nonlinear dynamics, such as self-organization, complexity, coherence, stochastic resonance, fractals and chaos. It comprises 18 chapters written by leading figures in the field and covers experimental and theoretical research, as well as the emerging technological possibilities such as nonlinear control techniques for treating pathological biodynamics, including heart arrhythmias and epilepsy. This book will attract the interest of professionals and students from a wide range of disciplines, including physicists, chemists, biologists, sensory physiologists and medical researchers such as cardiologists, neurologists and biomedical engineers.
Book Synopsis Dynamical Systems on Networks by : Mason Porter
Download or read book Dynamical Systems on Networks written by Mason Porter and published by Springer. This book was released on 2016-03-31 with total page 80 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume is a tutorial for the study of dynamical systems on networks. It discusses both methodology and models, including spreading models for social and biological contagions. The authors focus especially on “simple” situations that are analytically tractable, because they are insightful and provide useful springboards for the study of more complicated scenarios. This tutorial, which also includes key pointers to the literature, should be helpful for junior and senior undergraduate students, graduate students, and researchers from mathematics, physics, and engineering who seek to study dynamical systems on networks but who may not have prior experience with graph theory or networks. Mason A. Porter is Professor of Nonlinear and Complex Systems at the Oxford Centre for Industrial and Applied Mathematics, Mathematical Institute, University of Oxford, UK. He is also a member of the CABDyN Complexity Centre and a Tutorial Fellow of Somerville College. James P. Gleeson is Professor of Industrial and Applied Mathematics, and co-Director of MACSI, at the University of Limerick, Ireland.
Download or read book Biological Networks written by and published by . This book was released on with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Biological Networks in Human Health and Disease by : Romana Ishrat
Download or read book Biological Networks in Human Health and Disease written by Romana Ishrat and published by Springer Nature. This book was released on 2023-10-13 with total page 132 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents methods and tools of network biology and bioinformatics for understanding the disease dynamics and identification of drug targets. The initial section of chapters introduce the theoretical aspects followed by the different applications for construction and analysis of biological networks, methods for identifying crucial nodes in networks, and network dynamics. The book covers the latest advances in the network medicine, exploring the different types of biological networks, and their applications. It further reviews the role of R language in the network-based approaches that help in understanding biological systems and identifying biological functions. Towards the end, the book explores the recent developments and applications in machine learning and its potential for advancing network biology. Finally, the book elucidates a comprehensive yet a representative description of challenges associated with the understanding of disease dynamics using network biology. Given its scope, the book is intended for researchers and advanced postgraduate students of bioinformatics, computational biology, and medical sciences.
