Combinatorics of Genome Rearrangements

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Publisher : MIT Press
ISBN 13 : 0262062828
Total Pages : 305 pages
Book Rating : 4.2/5 (62 download)

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Book Synopsis Combinatorics of Genome Rearrangements by : Guillaume Fertin

Download or read book Combinatorics of Genome Rearrangements written by Guillaume Fertin and published by MIT Press. This book was released on 2009 with total page 305 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically oriented but offering biological explanations when required. From one cell to another, from one individual to another, and from one species to another, the content of DNA molecules is often similar. The organization of these molecules, however, differs dramatically, and the mutations that affect this organization are known as genome rearrangements. Combinatorial methods are used to reconstruct putative rearrangement scenarios in order to explain the evolutionary history of a set of species, often formalizing the evolutionary events that can explain the multiple combinations of observed genomes as combinatorial optimization problems. This book offers the first comprehensive survey of this rapidly expanding application of combinatorial optimization. It can be used as a reference for experienced researchers or as an introductory text for a broader audience. Genome rearrangement problems have proved so interesting from a combinatorial point of view that the field now belongs as much to mathematics as to biology. This book takes a mathematically oriented approach, but provides biological background when necessary. It presents a series of models, beginning with the simplest (which is progressively extended by dropping restrictions), each constructing a genome rearrangement problem. The book also discusses an important generalization of the basic problem known as the median problem, surveys attempts to reconstruct the relationships between genomes with phylogenetic trees, and offers a collection of summaries and appendixes with useful additional information.

Combinatorics of Genome Rearrangements

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Publisher :
ISBN 13 : 9780262258180
Total Pages : 288 pages
Book Rating : 4.2/5 (581 download)

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Book Synopsis Combinatorics of Genome Rearrangements by :

Download or read book Combinatorics of Genome Rearrangements written by and published by . This book was released on 2009 with total page 288 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically orientated but offering biological explanations when required, this volume offers the first comprehensive survey of a rapidly expanding application of combinatorial optimization.

Combinatorics of Genome Rearrangements and Phylogeny

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Publisher :
ISBN 13 :
Total Pages : 43 pages
Book Rating : 4.:/5 (925 download)

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Book Synopsis Combinatorics of Genome Rearrangements and Phylogeny by : Niklas Eriksen

Download or read book Combinatorics of Genome Rearrangements and Phylogeny written by Niklas Eriksen and published by . This book was released on 2001 with total page 43 pages. Available in PDF, EPUB and Kindle. Book excerpt:

A Combinatorial Approach to Genome-wide Ortholog Assignment Via Genome Rearrangement

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Publisher :
ISBN 13 :
Total Pages : 282 pages
Book Rating : 4.3/5 (121 download)

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Book Synopsis A Combinatorial Approach to Genome-wide Ortholog Assignment Via Genome Rearrangement by : Zheng Fu

Download or read book A Combinatorial Approach to Genome-wide Ortholog Assignment Via Genome Rearrangement written by Zheng Fu and published by . This book was released on 2007 with total page 282 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Computing and Combinatorics

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Publisher : Springer Science & Business Media
ISBN 13 : 3540405348
Total Pages : 573 pages
Book Rating : 4.5/5 (44 download)

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Book Synopsis Computing and Combinatorics by : Tandy Warnow

Download or read book Computing and Combinatorics written by Tandy Warnow and published by Springer Science & Business Media. This book was released on 2003-07-09 with total page 573 pages. Available in PDF, EPUB and Kindle. Book excerpt: The papers in this volume were presented at the 9th Annual International C- puting and Combinatorics Conference (COCOON 2003), held July 25–28, 2003, in Big Sky, MT, USA. The topics cover most aspects of theoretical computer science and combinatorics related to computing. Submissionstotheconferencethisyearwereconductedelectronically.Atotal of 114 papers were submitted, of which 52 were accepted. The papers were evaluated by an international program committee consisting of Nina Amenta, Tetsuo Asano, Bernard Chazelle, Zhixiang Chen, Francis Chin, Kyung-Yong Chwa, Robert Cimikowski, Anne Condon, Michael Fellows, Anna Gal, Michael Hallett,DanielHuson,NaokiKatoh,D.T.Lee,BernardMoret,BrendanMumey, Gene Myers, Hung Quang Ngo, Takao Nishizeki, Cindy Phillips, David Sanko?, Denbigh Starkey, Jie Wang, Lusheng Wang, Tandy Warnow and Binhai Zhu. It is expected that most of the accepted papers will appear in a more complete form in scienti?c journals. The submitted papers were from Canada (6), China (7), Estonia (1), F- land (1), France (1), Germany (8), Israel (4), Italy (1), Japan (11), Korea (22), Kuwait (1), New Zealand (1), Singapore (2), Spain (1), Sweden (2), Switzerland (3), Taiwan (7), the UK (1) and the USA (34). Each paper was evaluated by at least three Program Committee members, assisted in some cases by subre- rees. In addition to selected papers, the conference also included three invited presentations by Jon Bentley, Dan Gus?eld and Joel Spencer.

Mechanisms of DNA Recombination and Genome Rearrangements: Methods to Study Homologous Recombination

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Publisher : Academic Press
ISBN 13 : 0128144300
Total Pages : 610 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Mechanisms of DNA Recombination and Genome Rearrangements: Methods to Study Homologous Recombination by :

Download or read book Mechanisms of DNA Recombination and Genome Rearrangements: Methods to Study Homologous Recombination written by and published by Academic Press. This book was released on 2018-02-17 with total page 610 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mechanisms of DNA Recombination and Genome Rearrangements: Methods to Study Homologous Recombination, Volume 600, the latest release in the Methods in Enzymology series, continues the legacy of this premier serial with quality chapters authored by leaders in the field. Homologous genetic recombination remains the most enigmatic process in DNA metabolism. The molecular machines of recombination preserve the integrity of the genetic material in all organisms and generate genetic diversity in evolution. The same molecular machines that support genetic integrity by orchestrating accurate repair of the most deleterious DNA lesions, however, also promote survival of cancerous cells and emergence of radiation and chemotherapy resistance. This two-volume set offers a comprehensive set of cutting edge methods to study various aspects of homologous recombination and cellular processes that utilize the enzymatic machinery of recombination The chapters are written by the leading researches and cover a broad range of topics from the basic molecular mechanisms of recombinational proteins and enzymes to emerging cellular techniques and drug discovery efforts. Contributions by the leading experts in the field of DNA repair, recombination, replication and genome stability Documents cutting edge methods

Computing and Combinatorics

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Publisher : Springer
ISBN 13 : 3540697330
Total Pages : 692 pages
Book Rating : 4.5/5 (46 download)

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Book Synopsis Computing and Combinatorics by : Xiaodong Hu

Download or read book Computing and Combinatorics written by Xiaodong Hu and published by Springer. This book was released on 2008-06-19 with total page 692 pages. Available in PDF, EPUB and Kindle. Book excerpt: The refereed proceedings of the 14th Annual International Computing and Combinatorics Conference, COCOON 2008, held in Dalian, China, in June 2008. The 66 revised full papers presented were carefully reviewed and selected from 172 submissions. The papers are organized in topical sections on algorithms and data structures, algorithmic game theory and online algorithms, automata, languages, logic, and computability, combinatorics related to algorithms and complexity, complexity theory, cryptography, reliability and security, and database theory, computational biology and bioinformatics, computational algebra, geometry, and number theory, graph drawing and information visualization, graph theory and algorithms, communication networks, and optimization, wireless network, network optimization, and scheduling problem.

Computing and Combinatorics

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Publisher : Springer
ISBN 13 : 3540486860
Total Pages : 508 pages
Book Rating : 4.5/5 (44 download)

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Book Synopsis Computing and Combinatorics by : Takao Asano

Download or read book Computing and Combinatorics written by Takao Asano and published by Springer. This book was released on 2003-05-21 with total page 508 pages. Available in PDF, EPUB and Kindle. Book excerpt: The abstracts and papers in this volume were presented at the Fifth Annual International Computing and Combinatorics Conference (COCOON ’99), which was held in Tokyo, Japan from July 26 to 28, 1999. The topics cover most aspects of theoretical computer science and combinatorics pertaining to computing. In response to the call for papers, 88 high-quality extended abstracts were submitted internationally, of which 46 were selected for presentation by the p- gram committee. Every submitted paper was reviewed by at least three program committee members. Many of these papers represent reports on continuing - search, and it is expected that most of them will appear in a more polished and complete form in scienti c journals. In addition to the regular papers, this v- ume contains abstracts of two invited plenary talks by Prabhakar Raghavan and Seinosuke Toda. The conference also included a special talk by Kurt Mehlhorn on LEDA (Library of E cient Data types and Algorithms). The Hao Wang Award (inaugurated at COCOON ’97) is given to honor the paper judged by the program committee to have the greatest scienti c merit. The recipients of the Hao Wang Award 1999 were Hiroshi Nagamochi and Tos- hide Ibaraki for their paper \An Approximation for Finding a Smallest 2-Edge- Connected Subgraph Containing a Speci ed Spanning Tree".

Combinatorics of Permutations

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Publisher : CRC Press
ISBN 13 : 0203494377
Total Pages : 400 pages
Book Rating : 4.2/5 (34 download)

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Book Synopsis Combinatorics of Permutations by : Miklos Bona

Download or read book Combinatorics of Permutations written by Miklos Bona and published by CRC Press. This book was released on 2004-06-25 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: WINNER of a CHOICE Outstanding Academic Title Award for 2006! As linear orders, as elements of the symmetric group, modeled by matrices, modeled by graphspermutations are omnipresent in modern combinatorics. They are omnipresent but also multifaceted, and while several excellent books explore particular aspects of the subject, no one book h

Combinatorial Pattern Matching

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Publisher : Springer
ISBN 13 : 3319075667
Total Pages : 301 pages
Book Rating : 4.3/5 (19 download)

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Book Synopsis Combinatorial Pattern Matching by : Alexander S. Kulikov

Download or read book Combinatorial Pattern Matching written by Alexander S. Kulikov and published by Springer. This book was released on 2014-06-12 with total page 301 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 25th Annual Symposium on Combinatorial Pattern Matching, CPM 2014, held in Moscow, Russia, in June 2014. The 28 revised full papers presented together with 5 invited talks were carefully reviewed and selected from 54 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees; regular expressions; graphs; point sets; and arrays. The goal is to derive combinatorial properties of such structures and to exploit these properties in order to achieve superior performance for the corresponding computational problems. The meeting also deals with problems in computational biology; data compression and data mining; coding; information retrieval; natural language processing; and pattern recognition.

Comparative Genomics

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Publisher : Springer Nature
ISBN 13 : 3031062205
Total Pages : 344 pages
Book Rating : 4.0/5 (31 download)

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Book Synopsis Comparative Genomics by : Lingling Jin

Download or read book Comparative Genomics written by Lingling Jin and published by Springer Nature. This book was released on 2022-05-14 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 19th Annual RECOMB Satellite Workshop on Comparative Genomics, RECOMB-CG which took place in La Jolla, USA, during May 20-21, 2022. The 18 full papers included in this book were carefully reviewed and selected from 28 submissions. The papers were organized in topical sections on evolution; phylogenetics; homology and reconciliation; genome rearrangements; metagenomics; and genomic sequencing.

Comparative Genomics

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Publisher : Springer
ISBN 13 : 3030008347
Total Pages : 325 pages
Book Rating : 4.0/5 (3 download)

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Book Synopsis Comparative Genomics by : Mathieu Blanchette

Download or read book Comparative Genomics written by Mathieu Blanchette and published by Springer. This book was released on 2018-10-04 with total page 325 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the 16th International Conference on Comparative Genomics, RECOMB-CG 2018, held in Magog-Orford, QC, Canada, in October 2018. The 18 full papers presented were carefully reviewed and selected from 29 submissions. The papers cover topics such as: genome rearrangements; genome sequencing; applied comparative genomics; reconciliation and coalescence; and phylogenetics.

Comparative Genomics

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Publisher : Springer Nature
ISBN 13 : 1071638386
Total Pages : 622 pages
Book Rating : 4.0/5 (716 download)

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Book Synopsis Comparative Genomics by : João Carlos Setubal

Download or read book Comparative Genomics written by João Carlos Setubal and published by Springer Nature. This book was released on with total page 622 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Comparative Genomics

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Publisher : Springer
ISBN 13 : 3642047440
Total Pages : 249 pages
Book Rating : 4.6/5 (42 download)

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Book Synopsis Comparative Genomics by : Francesca D. Ciccarelli

Download or read book Comparative Genomics written by Francesca D. Ciccarelli and published by Springer. This book was released on 2009-09-30 with total page 249 pages. Available in PDF, EPUB and Kindle. Book excerpt: As genome-sequencing costs continue their downward spiral, sequencing of closely related organisms has become increasingly a?ordable. The growing amount of genomic data available demands for the constant development of computational tools to be applied in comparative genomics. The RECOMB Workshop on C- parative Genomics (RECOMB-CG) is devoted to bringing together scientists working on all aspects of comparative genomics, from computer scientists, ma- ematicians and statisticians working on novel computational approaches for genome analysis and comparison, to biologists applying these computational tools to study the structure and the evolution of prokaryotic and eukaryotic genomes. This volume contains the 19 papers presented at the 7th Annual RECOMB-CG workshop held during September 27–29, 2009 at the Renyi Institute, in Budapest, Hungary. The papers published in these proceedings were selected for oral p- sentation from 31 submissions from scientists around the world. Each paper was reviewed by at least three members of the Program Committee in a stringent and thoughtful peer-review process.

Comparative Genomics

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Publisher : Springer Science & Business Media
ISBN 13 : 3642161804
Total Pages : 312 pages
Book Rating : 4.6/5 (421 download)

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Book Synopsis Comparative Genomics by : Eric Tannier

Download or read book Comparative Genomics written by Eric Tannier and published by Springer Science & Business Media. This book was released on 2010-10-06 with total page 312 pages. Available in PDF, EPUB and Kindle. Book excerpt: The complexity of genome evolution has given birth to exciting challenges for computational biologists. A various range of algorithmic, statistical, mathem- ical techniques to elucidate the histories of molecules are developed each year and many are presented at the RECOMB satellite workshop on Comparative Genomics. It is a place where scientists working on all aspects of comparative genomics can share ideas on the development of tools and their application to relevant questions. This volume contains the papers presented at RECOMB-CG 2010, held on October 9–11 in Ottawa. The ?eld is still ?ourishing as seen from the papers presented this year: many developments enrich the combinatorics of genome rearrangements, while gene order phylogenies are becoming more and more - curate, thanks to a mixing of combinatorial and statistical principles, associated with rapid and thoughtful heuristics. Several papers tend to re?ne the models of genome evolution, and more and more genomic events can be modeled, from single nucleotide substitutions in whole genome alignments to large structural mutations or horizontal gene transfers.

Comparative Genomics

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Publisher : Springer Nature
ISBN 13 : 3031369114
Total Pages : 259 pages
Book Rating : 4.0/5 (313 download)

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Book Synopsis Comparative Genomics by : Katharina Jahn

Download or read book Comparative Genomics written by Katharina Jahn and published by Springer Nature. This book was released on 2023-07-12 with total page 259 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 20th Annual RECOMB Satellite Workshop on Comparative Genomics, RECOMB-CG 2023 which took place in Istanbul, Turkey, in April 2023. The 15 full papers included in this book were carefully reviewed and selected from 25 submissions. The papers present cutting edge research in comparative genomics, with an emphasis on computational approaches and novel experimental results. Chapters "Inferring Clusters of Orthologous and Paralogous Transcripts" and "Gene Order Phylogeny via Ancestral Genome Reconstruction under Dollo" are published Open Access under Creative Commons Attribution license (CC BY 4.0).

Genome Rearrangements

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Publisher :
ISBN 13 :
Total Pages : 206 pages
Book Rating : 4.:/5 (781 download)

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Book Synopsis Genome Rearrangements by : Adriana Muñoz

Download or read book Genome Rearrangements written by Adriana Muñoz and published by . This book was released on 2010 with total page 206 pages. Available in PDF, EPUB and Kindle. Book excerpt: