Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam

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Total Pages : 80 pages
Book Rating : 4.:/5 (128 download)

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Book Synopsis Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam by : John S. Hargrove

Download or read book Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam written by John S. Hargrove and published by . This book was released on 2021 with total page 80 pages. Available in PDF, EPUB and Kindle. Book excerpt: This report summarizes progress in the development and implementation of genetic stock identification (GSI) in the Snake River basin for natural-origin steelhead and spring/summer Chinook Salmon for the 01/01/2020 to 12/31/2020 reporting period. Four objectives for the GSI project are addressed in this report: 1) the maintenance and evaluation of single nucleotide polymorphism (SNP) panels for high-throughput genotyping of steelhead and Chinook Salmon in the Snake and Columbia river basins; 2) the updating, maintenance, and testing of SNP baselines to describe genetic variation and for use as a reference in conducting GSI for both species; 3) the implementation of GSI to estimate genetic stock composition and life history diversity of steelhead and spring/summer Chinook Salmon passing Lower Granite Dam (LGR); and 4) the summarization of life history and genetic diversity information for steelhead and spring/summer Chinook Salmon detected at PIT tag detection systems. For both species, panels of up to 368 SNPs have been in use for GSI and parentage-based tagging (PBT) at both Idaho Department of Fish and Game’s Eagle Fish Genetics Lab, and its collaborating laboratory, the Columbia River Inter-Tribal Fish Commission’s Hagerman Genetics Lab. We present an updated Steelhead SNP baseline version 4, which consists of 43 collections and 2,719 individuals. Chinook Salmon SNP baseline v3.1 consists of 30 collections and 4,356 individuals. SNP baselines are used to describe genetic diversity and structure of natural-origin populations throughout the Snake River. Based on population structure we have defined 10 genetic stocks for steelhead and 7 genetic stocks for Chinook Salmon for GSI analysis at LGR. We summarize GSI results for returning adults and emigrating juveniles during 2019-2020 at LGR using v3.1 baselines as reference for both steelhead and Chinook Salmon. Finally, we describe the life history variation and genetic diversity of steelhead and Chinook Salmon detected at IPTDS. The information presented in this report provides critical data for viable salmonid population (VSP) monitoring of the Snake River steelhead DPS and the Snake River spring/summer Chinook Salmon ESU.

Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam

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Total Pages : 25 pages
Book Rating : 4.:/5 (126 download)

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Book Synopsis Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam by : John S. Hargrove

Download or read book Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam written by John S. Hargrove and published by . This book was released on 2020 with total page 25 pages. Available in PDF, EPUB and Kindle. Book excerpt: This report summarizes progress in the development and implementation of genetic stock identification (GSI) in the Snake River basin for natural-origin steelhead and spring/summer Chinook Salmon for the 01/01/2019 to 12/31/2019 reporting period. Four objectives for the GSI project are addressed in this report: 1) the maintenance and evaluation of single nucleotide polymorphism (SNP) panels for high-throughput genotyping of steelhead and Chinook Salmon in the Snake and Columbia river basins; 2) the updating, maintenance, and testing of SNP baselines to describe genetic variation and for use as a reference in conducting GSI for both species; 3) the implementation of GSI to estimate genetic stock composition and life history diversity of steelhead and spring/summer Chinook Salmon passing Lower Granite Dam (LGR); and 4) the summarization of life history and genetic diversity information for steelhead and spring/summer Chinook Salmon detected at PIT tag detection systems. For both species, panels of up to 379 SNPs have been in use for GSI and parentage-based tagging (PBT) at both Idaho Department of Fish and Game’s Eagle Fish Genetics Lab, and its collaborating laboratory, the Columbia River Inter-Tribal Fish Commission’s Hagerman Genetics Lab. Steelhead SNP baseline version v3.1 consists of 45 collections and 5,967 individuals. Chinook Salmon SNP baseline v3.1 consists of 30 collections and 4,356 individuals. SNP baselines are used to describe genetic diversity and structure of natural-origin populations throughout the Snake River. Based on population structure we have defined 10 genetic stocks for steelhead and 7 genetic stocks for Chinook Salmon for GSI analysis at LGR. We summarize GSI results for returning adults and emigrating juveniles during 2018-2019 at LGR using v3.1 baselines as reference. The information presented in this report provides critical data for viable salmonid population (VSP) monitoring of the Snake River steelhead DPS and the Snake River spring/summer Chinook Salmon ESU.

Chinook and Steelhead Genotyping for Genetics Stock Identification at Lower Granite Dam

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ISBN 13 :
Total Pages : 70 pages
Book Rating : 4.:/5 (748 download)

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Book Synopsis Chinook and Steelhead Genotyping for Genetics Stock Identification at Lower Granite Dam by : Mike Ackerman

Download or read book Chinook and Steelhead Genotyping for Genetics Stock Identification at Lower Granite Dam written by Mike Ackerman and published by . This book was released on 2011 with total page 70 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam

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ISBN 13 :
Total Pages : 25 pages
Book Rating : 4.:/5 (119 download)

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Book Synopsis Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam by : John S. Hargrove

Download or read book Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam written by John S. Hargrove and published by . This book was released on 2019 with total page 25 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam

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ISBN 13 :
Total Pages : 141 pages
Book Rating : 4.:/5 (811 download)

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Book Synopsis Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam by : Michael W. Ackerman

Download or read book Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam written by Michael W. Ackerman and published by . This book was released on 2012 with total page 141 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam

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ISBN 13 :
Total Pages : 68 pages
Book Rating : 4.:/5 (922 download)

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Book Synopsis Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam by :

Download or read book Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam written by and published by . This book was released on 2015 with total page 68 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam

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ISBN 13 :
Total Pages : 60 pages
Book Rating : 4.:/5 (874 download)

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Book Synopsis Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam by : Michael W. Ackerman

Download or read book Chinook and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam written by Michael W. Ackerman and published by . This book was released on 2014 with total page 60 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam

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ISBN 13 :
Total Pages : 51 pages
Book Rating : 4.:/5 (953 download)

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Book Synopsis Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam by : Michael W. Ackermanm

Download or read book Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam written by Michael W. Ackermanm and published by . This book was released on 2016 with total page 51 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam

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ISBN 13 :
Total Pages : 69 pages
Book Rating : 4.:/5 (1 download)

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Book Synopsis Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam by : John H. Powell (Fisheries biologist)

Download or read book Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam written by John H. Powell (Fisheries biologist) and published by . This book was released on 2017 with total page 69 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam

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ISBN 13 :
Total Pages : 59 pages
Book Rating : 4.:/5 (14 download)

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Book Synopsis Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam by : John H. Powell (Fisheries biologist)

Download or read book Chinook Salmon and Steelhead Genotyping for Genetic Stock Identification at Lower Granite Dam written by John H. Powell (Fisheries biologist) and published by . This book was released on 2018 with total page 59 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Natural-origin Steelhead and Chinook Salmon Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin

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Total Pages : 0 pages
Book Rating : 4.:/5 (142 download)

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Book Synopsis Natural-origin Steelhead and Chinook Salmon Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin by : John S. Hargrove

Download or read book Natural-origin Steelhead and Chinook Salmon Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin written by John S. Hargrove and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This report summarizes life history and genetic diversity information for wild adult steelhead (Oncorhynchus mykiss) and spring/summer Chinook Salmon (O. tshawytscha)sampled at Lower Granite Dam and later detected in a Distinct Population Segment (DPS) or Evolutionarily Significant Unit (ESU) in the Snake River basin for the 01/01/2022 to 12/31/2022reporting period. This reporting period covers analysis of individuals crossing Lower Granite Dam in spawn year (SY) 2022. A total of 1,917 steelhead and 2,791 Chinook Salmon were sampled at Lower Granite Dam. Of the fish tagged at Lower Granite Dam, 930 steelhead and 1,732 Chinook Salmon were subsequently identified at a PIT tag array within the boundary of a population in the Snake River basin. Panels of up to 368 SNPs were genotyped at both Idaho Department of Fish and Game’s Eagle Fish Genetics Lab and the Columbia River Inter-Tribal Fish Commission’s Hagerman Genetics Lab, to assign these fish to hatchery parents or wild genetic stocks. We describe the life history variation and genetic diversity of steelhead and Chinook Salmon detected in Snake River populations for SY2022. The information presented in this report provides critical data for viable Salmonid population monitoring of the Snake River steelhead DPS and the Snake River spring/summer Chinook Salmon ESU. Authors: John S. Hargrove, Fisheries Biologist 2Micah Davison, Supervisory Fisheries Biologist Matthew R. Campbell, Fisheries Genetics Program Coordinator Suggested citation: Hargrove, J. S., M. Davison, and M. R. Campbell. 2023. Natural-origin steelhead and Chinook Salmon life history and genetic diversity at PIT tag detection locations throughout the Snake River basin. Idaho Department of Fish and Game Report 23-09. Annual Report, BPA Project 2010-031-00.

Natural-origin Chinook Salmon and Steelhead Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin

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ISBN 13 :
Total Pages : 54 pages
Book Rating : 4.:/5 (127 download)

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Book Synopsis Natural-origin Chinook Salmon and Steelhead Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin by : John S. Hargrove

Download or read book Natural-origin Chinook Salmon and Steelhead Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin written by John S. Hargrove and published by . This book was released on 2019 with total page 54 pages. Available in PDF, EPUB and Kindle. Book excerpt: This report summarizes life history and genetic diversity information for wild adult steelhead and spring/summer Chinook Salmon sampled at Lower Granite Dam and later detected in a Distinct Population Segment (DPS) or Evolutionarily Significant Unit (ESU) population in the Snake River basin for the 01/01/2018 to 12/31/2018 reporting period. This reporting period covers analysis of individuals crossing Lower Granite Dam in spawn year 2018. A total of 2,306 steelhead and 1,372 Chinook Salmon were sampled at Lower Granite Dam, 905 and 704 of which were subsequently identified at a PIT tag detection location elsewhere in the Snake River basin. Panels of up to 379 SNPs were genotyped at both Idaho Department of Fish and Game's Eagle Fish Genetics Lab and its collaborating laboratory, the Columbia River Inter-Tribal Fish Commission's Hagerman Genetics Lab, to assign these fish to hatchery parents or wild genetic stocks. We describe the life history variation and genetic diversity of steelhead and Chinook Salmon detected in Snake River populations. The information presented in this report provides critical data for viable Salmonid population monitoring of the Snake River steelhead DPS and the Snake River spring/summer Chinook Salmon ESU.

Natural-origin Chinook Salmon and Steelhead Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin

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ISBN 13 :
Total Pages : 37 pages
Book Rating : 4.:/5 (126 download)

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Book Synopsis Natural-origin Chinook Salmon and Steelhead Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin by : John S. Hargrove

Download or read book Natural-origin Chinook Salmon and Steelhead Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin written by John S. Hargrove and published by . This book was released on 2021 with total page 37 pages. Available in PDF, EPUB and Kindle. Book excerpt: This report summarizes life history and genetic diversity information for wild adult steelhead and spring/summer Chinook Salmon sampled at Lower Granite Dam and later detected in a Distinct Population Segment (DPS) or Evolutionarily Significant Unit (ESU) population in the Snake River basin for the 01/01/2020 to 12/31/2020 reporting period. This reporting period covers analysis of individuals crossing Lower Granite Dam in spawn year (SY) 2020. A total of 2,301 steelhead but no Chinook Salmon were sampled at Lower Granite Dam and 1,138 steelhead were subsequently identified at PIT tag detection locations in the Snake River basin. Panels of up to 379 SNPs were genotyped at both Idaho Department of Fish and Game’s Eagle Fish Genetics Lab and the Columbia River Inter-Tribal Fish Commission’s Hagerman Genetics Lab, to assign these fish to hatchery parents or wild genetic stocks. We describe the life history variation and genetic diversity of steelhead detected in Snake River populations for SY2020. The information presented in this report provides critical data for viable Salmonid population monitoring of the Snake River steelhead DPS and the Snake River spring/summer Chinook Salmon ESU.

Natural-origin Steelhead and Chinook Salmon Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin

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Total Pages : 0 pages
Book Rating : 4.:/5 (139 download)

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Book Synopsis Natural-origin Steelhead and Chinook Salmon Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin by : John S. Hargrove

Download or read book Natural-origin Steelhead and Chinook Salmon Life History and Genetic Diversity at PIT Tag Detection Locations Throughout the Snake River Basin written by John S. Hargrove and published by . This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This report summarizes life history and genetic diversity information for wild adult steelhead (Oncorhynchus mykiss) and spring/summer Chinook Salmon (O. tshawytscha) sampled at Lower Granite Dam and later detected in a Distinct Population Segment (DPS) or Evolutionarily Significant Unit (ESU) population in the Snake River basin for the 01/01/2021 to 12/31/2021 reporting period. This reporting period covers analysis of individuals crossing Lower Granite Dam in spawn year (SY) 2021. A total of 3,126 steelhead and 1,974 Chinook Salmon were sampled at Lower Granite Dam. Of the fish tagged at Lower Granite Dam, 1,659 steelhead and 1,034 Chinook Salmon were subsequently identified at a PIT tag array within the boundary of a population in the Snake River basin. Panels of up to 379 SNPs were genotyped at both Idaho Department of Fish and Game’s Eagle Fish Genetics Lab and the Columbia River Inter- Tribal Fish Commission’s Hagerman Genetics Lab, to assign these fish to hatchery parents or wild genetic stocks. We describe the life history variation and genetic diversity of steelhead and Chinook Salmon detected in Snake River populations for SY2021. The information presented in this report provides critical data for viable Salmonid population monitoring of the Snake River steelhead DPS and the Snake River spring/summer Chinook Salmon ESU. Authors: John S. Hargrove, Fisheries Biologist 2 Micah Davison, Supervisory Fisheries Biologist Matthew R. Campbell, Fisheries Genetics Program Coordinator Suggested citation: Hargrove, J. S., M. Davison, and M. R. Campbell. 2022. Natural-origin steelhead and Chinook Salmon life history and genetic diversity at PIT tag detection locations throughout the Snake River basin. Idaho Department of Fish and Game Report 22-13. Annual Report, BPA Project 2010-026-00.

Wild Adult Steelhead and Chinook Salmon Abundance and Composition at Lower Granite Dam, Spawn Year 2019

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Total Pages : 89 pages
Book Rating : 4.:/5 (128 download)

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Book Synopsis Wild Adult Steelhead and Chinook Salmon Abundance and Composition at Lower Granite Dam, Spawn Year 2019 by : Katherine M. Lawry

Download or read book Wild Adult Steelhead and Chinook Salmon Abundance and Composition at Lower Granite Dam, Spawn Year 2019 written by Katherine M. Lawry and published by . This book was released on 2020 with total page 89 pages. Available in PDF, EPUB and Kindle. Book excerpt: [Chapter 2] Little population-specific data was available for Snake River steelhead, especially for Idaho populations, during the ESA listing process and previous status assessments. Status and viability were primarily based on counts of adipose-intact steelhead at Lower Granite Dam. Instead of population identity, steelhead were split into two length groups. This chapter reviews the recent data series and updates the reconstruction of Idaho steelhead populations before formal sampling began at Lower Granite Dam in spawn year 2019. The reconstructed estimates provide the best available means to connect present status of Idaho steelhead stocks to status at the time of ESA listing.

Stock Identification of Columbia River Chinook Salmon and Steelhead Trout, 1986 Final Report

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ISBN 13 :
Total Pages : 189 pages
Book Rating : 4.:/5 (727 download)

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Book Synopsis Stock Identification of Columbia River Chinook Salmon and Steelhead Trout, 1986 Final Report by :

Download or read book Stock Identification of Columbia River Chinook Salmon and Steelhead Trout, 1986 Final Report written by and published by . This book was released on 1986 with total page 189 pages. Available in PDF, EPUB and Kindle. Book excerpt: For the first time genetic similarities among chinook salmon and among steelhead trout stocks of the Columbia River were determined using a holistic approach including analysis of life history, biochemical, body shape and meristic characters. We examined between year differences for each of the stock characteristics and we also correlated the habitat characteristics with the wild stock characteristics. The most important principle for managing stocks of Columbia River chinook salmon and steelhead trout is that geographically proximal stocks tend to be like each other. Run timing and similarity of the stream systems should be taken into account when managing stocks. There are similarities in the classifications derived for chinook salmon and steelhead trout. Steelhead trout or chinook salmon tend to be genetically similar to other steelhead or chinook stocks, respectively, that originate from natal streams that are geographically close, regardless of time of freshwater entry. The primary exception Lo this trend is between stocks of spring and fall chinook in the upper Columbia River where fish with the different run timings are dissimilar, though geographically proximate stocks within a run form are generally very similar. Spring chinook stocks have stronger affinities to other spring chinook stocks that originate in the same side of the Cascade Range than to these Spring chinook stock: spawned on the other side of the Cascade Range. Spring chinook from west of the Cascades are more closely related to fall chinook than they are to spring chinook from east of the Cascades. Summer chinook can be divided into two main groups: (1) populations in the upper Columbia River that smolt as subyearlings and fall chinook stocks; and (2) summer chinook stocks from the Salmon River, Idaho, which smolt as yearlings and are similar to spring chinook stocks from Idaho. Fall chinook appear to comprise one large diverse group that is not easily subdivided into smaller subgroups. In general, upriver brights differ from tules by at least one locus. Steelhead stocks can be divided into two main groups: (1) those stocks found east of the Cascades; and (2) those stocks found west of the Cascade Mountains. Steelhead from west of the Cascades are divisable into three subgroups of closely related stocks: (1) a group comprised mainly of wild winter steelhead from the lower Columbia River; (2) Willamette River hatchery and wild winter steelhead; and (3) summer and winter hatchery steelhead stocks from both the lower Columbia and Willamette Rivers. Steelhead from east of the Cascades are separable into three subgroups of closely related stocks: (1) wild summer steelhead; (2) a group comprised mainly of hatchery summer steelhead stocks; and (3) other hatchery and wild steelhead from Idaho. Streams east and west of the Cascades can be differentiated using characters including precipitation, elevation, distance from the mouth of the Columbia, number of frost-free days and minimum annual air temperature. There are significant differences among the stocks of chinook salmon and steelhead trout for each of the meristic and body shape characters. Between year variation does not account for differences among the stocks for the meristic and body shape characters with the exception of pelvic fin ray number in steelhead trout. Characters based on body shape are important for discriminating between the groups of hatchery and wild steelhead stocks. We could not determine whether the basis for the differences were genetic or environmental. The reason for the variation of the characters among stocks is as yet unclear. Neutrality or adaptiveness has not been firmly demonstrated.

Wild Adult Steelhead and Chinook Salmon Abundance and Composition at Lower Granite Dam, Spawn Year 2017

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Total Pages : 62 pages
Book Rating : 4.:/5 (18 download)

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Book Synopsis Wild Adult Steelhead and Chinook Salmon Abundance and Composition at Lower Granite Dam, Spawn Year 2017 by : Carlos A. Camacho

Download or read book Wild Adult Steelhead and Chinook Salmon Abundance and Composition at Lower Granite Dam, Spawn Year 2017 written by Carlos A. Camacho and published by . This book was released on 2018 with total page 62 pages. Available in PDF, EPUB and Kindle. Book excerpt: