Biological Shape Analysis

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Geometric Morphometrics for Biologists

Author : Miriam Zelditch
Publisher : Academic Press
ISBN 13 : 0123869048
Total Pages : 489 pages
Book Rating : 4.1/5 (238 download)

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Book Synopsis Geometric Morphometrics for Biologists by : Miriam Zelditch

Download or read book Geometric Morphometrics for Biologists written by Miriam Zelditch and published by Academic Press. This book was released on 2012-09-24 with total page 489 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first edition of Geometric Morphometrics for Biologists has been the primary resource for teaching modern geometric methods of shape analysis to biologists who have a stronger background in biology than in multivariate statistics and matrix algebra. These geometric methods are appealing to biologists who approach the study of shape from a variety of perspectives, from clinical to evolutionary, because they incorporate the geometry of organisms throughout the data analysis. The second edition of this book retains the emphasis on accessible explanations, and the copious illustrations and examples of the first, updating the treatment of both theory and practice. The second edition represents the current state-of-the-art and adds new examples and summarizes recent literature, as well as provides an overview of new software and step-by-step guidance through details of carrying out the analyses. - Contains updated coverage of methods, especially for sampling complex curves and 3D forms and a new chapter on applications of geometric morphometrics to forensics - Offers a reorganization of chapters to streamline learning basic concepts - Presents detailed instructions for conducting analyses with freely available, easy to use software - Provides numerous illustrations, including graphical presentations of important theoretical concepts and demonstrations of alternative approaches to presenting results

Biological Shape Analysis

Author : Pete E. Lestrel
Publisher : World Scientific
ISBN 13 : 9814355240
Total Pages : 324 pages
Book Rating : 4.8/5 (143 download)

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Book Synopsis Biological Shape Analysis by : Pete E. Lestrel

Download or read book Biological Shape Analysis written by Pete E. Lestrel and published by World Scientific. This book was released on 2011 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Proceedings describe the current state of research dealing with biological shape analysis. The quantitative analysis of the shape of biological organisms represents a challenge that has now seen breakthroughs with new methodologies such as elliptical Fourier analysis, quantitative trait loci analysis (QTLs), chromosome segment substitution lines (CSSLs), thin plate splines, etc. The Proceedings also illustrate the diversity of disciplines that are actively involved in the characterization and analysis of biological shape. Moreover, many of the papers focus on the relationship of the shape to the processes that determine the biological form, an issue of major continuing concern in biology.

Shape Analysis and Classification

Author : Luciano da Fontoura Costa
Publisher : CRC Press
ISBN 13 : 9781420037555
Total Pages : 688 pages
Book Rating : 4.0/5 (375 download)

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Book Synopsis Shape Analysis and Classification by : Luciano da Fontoura Costa

Download or read book Shape Analysis and Classification written by Luciano da Fontoura Costa and published by CRC Press. This book was released on 2010-12-12 with total page 688 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in shape analysis impact a wide range of disciplines, from mathematics and engineering to medicine, archeology, and art. Anyone just entering the field, however, may find the few existing books on shape analysis too specific or advanced, and for students interested in the specific problem of shape recognition and characterization, traditio

Shape Classification and Analysis

Author : Luciano da Fona Costa
Publisher : CRC Press
ISBN 13 : 0849379407
Total Pages : 693 pages
Book Rating : 4.8/5 (493 download)

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Book Synopsis Shape Classification and Analysis by : Luciano da Fona Costa

Download or read book Shape Classification and Analysis written by Luciano da Fona Costa and published by CRC Press. This book was released on 2018-10-03 with total page 693 pages. Available in PDF, EPUB and Kindle. Book excerpt: Because the properties of objects are largely determined by their geometric features, shape analysis and classification are essential to almost every applied scientific and technological area. A detailed understanding of the geometrical features of real-world entities (e.g., molecules, organs, materials and components) can provide important clues about their origin and function. When properly and carefully applied, shape analysis offers an exceedingly rich potential to yield useful applications in diverse areas ranging from material sciences to biology and neuroscience. Get Access to the Authors’ Own Cutting-Edge Open-Source Software Projects—and Then Actually Contribute to Them Yourself! The authors of Shape Analysis and Classification: Theory and Practice, Second Edition have improved the bestselling first edition by updating the tremendous progress in the field. This exceptionally accessible book presents the most advanced imaging techniques used for analyzing general biological shapes, such as those of cells, tissues, organs, and organisms. It implements numerous corrections and improvements—many of which were suggested by readers of the first edition—to optimize understanding and create what can truly be called an interactive learning experience. New Material in This Second Edition Addresses Graph and complex networks Dimensionality reduction Structural pattern recognition Shape representation using graphs Graphically reformulated, this edition updates equations, figures, and references, as well as slides that will be useful in related courses and general discussion. Like the popular first edition, this text is applicable to many fields and certain to become a favored addition to any library. Visit http://www.vision.ime.usp.br/~cesar/shape/ for Useful Software, Databases, and Videos

Biological Shape Analysis - Proceedings Of The 1st International Symposium

Author : Pete E Lestrel
Publisher : World Scientific
ISBN 13 : 9814458627
Total Pages : 324 pages
Book Rating : 4.8/5 (144 download)

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Book Synopsis Biological Shape Analysis - Proceedings Of The 1st International Symposium by : Pete E Lestrel

Download or read book Biological Shape Analysis - Proceedings Of The 1st International Symposium written by Pete E Lestrel and published by World Scientific. This book was released on 2011-06-20 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Proceedings describe the current state of research dealing with biological shape analysis. The quantitative analysis of the shape of biological organisms represents a challenge that has now seen breakthroughs with new methodologies such as elliptical Fourier analysis, quantitative trait loci analysis (QTLs), chromosome segment substitution lines (CSSLs), thin plate splines, etc. The Proceedings also illustrate the diversity of disciplines that are actively involved in the characterization and analysis of biological shape. Moreover, many of the papers focus on the relationship of the shape to the processes that determine the biological form, an issue of major continuing concern in biology.

Biological Shape Analysis - Proceedings Of The 3rd International Symposium

Author : Pete E Lestrel
Publisher : World Scientific
ISBN 13 : 9814704202
Total Pages : 324 pages
Book Rating : 4.8/5 (147 download)

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Book Synopsis Biological Shape Analysis - Proceedings Of The 3rd International Symposium by : Pete E Lestrel

Download or read book Biological Shape Analysis - Proceedings Of The 3rd International Symposium written by Pete E Lestrel and published by World Scientific. This book was released on 2015-06-11 with total page 324 pages. Available in PDF, EPUB and Kindle. Book excerpt: The proceedings were designed to bring together researchers who share a common interest in the quantitative description of the biological form. Participants came from very diverse disciplines such as agricultural genetics, botany, entomology, forensics, human anatomy, paleontology, human evolution, primatology, dentistry, etc. The participants applied various methodological approaches that are being increasingly used to describe aspects of the biological form. These techniques include neural networks, Fourier descriptors, shape mapping, genome-wide association studies (GWAS), Riemann curves, surface mapping, etc. A number of the contributions in the proceedings represent state of the art research that reflects advances in that discipline.

Systematics and the Exploration of Life

Author : Philippe Grandcolas
Publisher : John Wiley & Sons
ISBN 13 : 1786302659
Total Pages : 242 pages
Book Rating : 4.7/5 (863 download)

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Book Synopsis Systematics and the Exploration of Life by : Philippe Grandcolas

Download or read book Systematics and the Exploration of Life written by Philippe Grandcolas and published by John Wiley & Sons. This book was released on 2021-05-04 with total page 242 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book's aim is to obtain and organize knowledge about the diversity of living things. Their epistomological and methodological fundamentals are explained in the framework of the biology of evolution. The methods of construction and use of phylogenetic trees are presented as well as the classification and description of taxa with the nomenclature rules.

Biological Shape Analysis - Proceedings Of The 2nd International Symposium

Author : Pete E Lestrel
Publisher : World Scientific
ISBN 13 : 9814518425
Total Pages : 238 pages
Book Rating : 4.8/5 (145 download)

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Book Synopsis Biological Shape Analysis - Proceedings Of The 2nd International Symposium by : Pete E Lestrel

Download or read book Biological Shape Analysis - Proceedings Of The 2nd International Symposium written by Pete E Lestrel and published by World Scientific. This book was released on 2013-06-04 with total page 238 pages. Available in PDF, EPUB and Kindle. Book excerpt: This proceedings volume describes the current state of research dealing with biological shape analysis. The quantitative analysis of the shape of biological organisms represents a challenge that has now seen breakthroughs with new methodologies such as elliptical Fourier analysis, quantitative trait loci analysis (QTLs), thin plate splines, etc. The volume also illustrates the diversity of disciplines that are actively involved in the characterization and analysis of the biological shape. Some of the papers deal with the need to relate the underlying genome responsible for the actual observed characteristics of form. Moreover, many of the papers focus on the relationship of the shape to the processes that determine the biological form, an issue of major continuing concern in biology.This volume brings together for the second time practitioners from a variety of disciplines who have been concerned with the necessity of applying new methods to the analysis of biological shape. Previous methodologies based on the conventional metrical approach (distances, angles and ratios), have not been able to adequately capture — in quantitative terms — the subtleties and complexities of biological form due to its irregularity. This volume represents an initial attempt to quantitatively characterize the biological form in both two- and three-dimensions, as it is actually perceived.There is no volume available that deals with the subject matter of these Proceedings. The papers represent, as in the first proceedings, a unique look at: (1) new methodologies developed and used quantitatively describe the biological form; (2) the need to relate the observed biological shape to the underlying processes that determine the shape; and (3) the tremendous diversity of disciplines actively involved in the characterization and analysis of biological shapes. These range from physical anthropology, anatomy, genetics, botany, entomology, forensics, to applied mathematics, etc.

Biological Shape Analysis - Proceedings Of The 4th International Symposium

Author : Pete E Lestrel
Publisher : World Scientific
ISBN 13 : 9813225718
Total Pages : 457 pages
Book Rating : 4.8/5 (132 download)

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Book Synopsis Biological Shape Analysis - Proceedings Of The 4th International Symposium by : Pete E Lestrel

Download or read book Biological Shape Analysis - Proceedings Of The 4th International Symposium written by Pete E Lestrel and published by World Scientific. This book was released on 2017-04-27 with total page 457 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume represents an ongoing series entitled Biological Shape Analysis, of which this is the 4th Edition. These proceedings represent state-of-the-art research in the field of biology, broadly-based, that deal with the quantitative analysis of the shape of the biological form. These numerical analyses include Fourier analytic methods, wavelets, neural networks, machine vision, machine learning, median axis transforms, spectral clustering, genome-wide association studies, 3D surface mapping, as well as more traditional morphometric approaches. Studies included are drawn from research in agricultural genetics, anatomy, anthropology, botany, dentistry, entomology, forensics, human evolution, paleontology, primatology, to name a few.The shape of forms can be considered of central importance in terms of identification, comparison, and classification of biological organisms. These proceedings, of which this is the fourth one, are unique in that they deal extensively with a wide range of organisms in biology, including both fauna and flora. They bring together diverse practitioners from a wide variety of disciplines. This represents a major departure from the current emphasis on specialization in the biological sciences. It is of particular importance to note that these issues dealing with shape analysis of biological structures are found to be common across very diverse disciplines and these proceedings are the first ones to highlight this.There are no volumes currently available that are as broadly-based as these proceedings in dealing with the quantification of shape analysis. (1) These volumes are unique in their diversity in covering the biological disciplines; (2) The emphasis on numerical approaches; and (3) the numerous state-of-the-art research papers.

Analysis of Biological Data

Author : Sanghamitra Bandyopadhyay
Publisher : World Scientific
ISBN 13 : 9812708898
Total Pages : 353 pages
Book Rating : 4.8/5 (127 download)

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Book Synopsis Analysis of Biological Data by : Sanghamitra Bandyopadhyay

Download or read book Analysis of Biological Data written by Sanghamitra Bandyopadhyay and published by World Scientific. This book was released on 2007 with total page 353 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics, a field devoted to the interpretation and analysis of biological data using computational techniques, has evolved tremendously in recent years due to the explosive growth of biological information generated by the scientific community. Soft computing is a consortium of methodologies that work synergistically and provides, in one form or another, flexible information processing capabilities for handling real-life ambiguous situations. Several research articles dealing with the application of soft computing tools to bioinformatics have been published in the recent past; however, they are scattered in different journals, conference proceedings and technical reports, thus causing inconvenience to readers, students and researchers. This book, unique in its nature, is aimed at providing a treatise in a unified framework, with both theoretical and experimental results, describing the basic principles of soft computing and demonstrating the various ways in which they can be used for analyzing biological data in an efficient manner. Interesting research articles from eminent scientists around the world are brought together in a systematic way such that the reader will be able to understand the issues and challenges in this domain, the existing ways of tackling them, recent trends, and future directions. This book is the first of its kind to bring together two important research areas, soft computing and bioinformatics, in order to demonstrate how the tools and techniques in the former can be used for efficiently solving several problems in the latter. Sample Chapter(s). Chapter 1: Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments (160 KB). Contents: Overview: Bioinformatics: Mining the Massive Data from High Throughput Genomics Experiments (H Tang & S Kim); An Introduction to Soft Computing (A Konar & S Das); Biological Sequence and Structure Analysis: Reconstructing Phylogenies with Memetic Algorithms and Branch-and-Bound (J E Gallardo et al.); Classification of RNA Sequences with Support Vector Machines (J T L Wang & X Wu); Beyond String Algorithms: Protein Sequence Analysis Using Wavelet Transforms (A Krishnan & K-B Li); Filtering Protein Surface Motifs Using Negative Instances of Active Sites Candidates (N L Shrestha & T Ohkawa); Distill: A Machine Learning Approach to Ab Initio Protein Structure Prediction (G Pollastri et al.); In Silico Design of Ligands Using Properties of Target Active Sites (S Bandyopadhyay et al.); Gene Expression and Microarray Data Analysis: Inferring Regulations in a Genomic Network from Gene Expression Profiles (N Noman & H Iba); A Reliable Classification of Gene Clusters for Cancer Samples Using a Hybrid Multi-Objective Evolutionary Procedure (K Deb et al.); Feature Selection for Cancer Classification Using Ant Colony Optimization and Support Vector Machines (A Gupta et al.); Sophisticated Methods for Cancer Classification Using Microarray Data (S-B Cho & H-S Park); Multiobjective Evolutionary Approach to Fuzzy Clustering of Microarray Data (A Mukhopadhyay et al.). Readership: Graduate students and researchers in computer science, bioinformatics, computational and molecular biology, artificial intelligence, data mining, machine learning, electrical engineering, system science; researchers in pharmaceutical industries.

Shape

Author : Jordan Ellenberg
Publisher : Penguin
ISBN 13 : 1984879065
Total Pages : 481 pages
Book Rating : 4.9/5 (848 download)

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Book Synopsis Shape by : Jordan Ellenberg

Download or read book Shape written by Jordan Ellenberg and published by Penguin. This book was released on 2021-05-25 with total page 481 pages. Available in PDF, EPUB and Kindle. Book excerpt: An instant New York Times Bestseller! “Unreasonably entertaining . . . reveals how geometric thinking can allow for everything from fairer American elections to better pandemic planning.” —The New York Times From the New York Times-bestselling author of How Not to Be Wrong—himself a world-class geometer—a far-ranging exploration of the power of geometry, which turns out to help us think better about practically everything. How should a democracy choose its representatives? How can you stop a pandemic from sweeping the world? How do computers learn to play Go, and why is learning Go so much easier for them than learning to read a sentence? Can ancient Greek proportions predict the stock market? (Sorry, no.) What should your kids learn in school if they really want to learn to think? All these are questions about geometry. For real. If you're like most people, geometry is a sterile and dimly remembered exercise you gladly left behind in the dust of ninth grade, along with your braces and active romantic interest in pop singers. If you recall any of it, it's plodding through a series of miniscule steps only to prove some fact about triangles that was obvious to you in the first place. That's not geometry. Okay, it is geometry, but only a tiny part, which has as much to do with geometry in all its flush modern richness as conjugating a verb has to do with a great novel. Shape reveals the geometry underneath some of the most important scientific, political, and philosophical problems we face. Geometry asks: Where are things? Which things are near each other? How can you get from one thing to another thing? Those are important questions. The word "geometry"comes from the Greek for "measuring the world." If anything, that's an undersell. Geometry doesn't just measure the world—it explains it. Shape shows us how.

Morphometrics with R

Author : Julien Claude
Publisher : Springer Science & Business Media
ISBN 13 : 0387777903
Total Pages : 317 pages
Book Rating : 4.3/5 (877 download)

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Book Synopsis Morphometrics with R by : Julien Claude

Download or read book Morphometrics with R written by Julien Claude and published by Springer Science & Business Media. This book was released on 2008-12-15 with total page 317 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to explain how to use R to perform morphometrics. Morpho- tric analysis is the study of shape and size variations and covariations and their covariations with other variables. Morphometrics is thus deeply rooted within stat- tical sciences. While most applications concern biology, morphometrics is becoming common tools used in archeological, palaeontological, geographical, or medicine disciplines. Since the recent formalizations of some of the ideas of predecessors, such as D’arcy Thompson, and thanks to the development of computer techno- gies and new ways for appraising shape changes and variation, morphometrics have undergone, and are still undergoing, a revolution. Most techniques dealing with s- tistical shape analysis have been developed in the last three decades, and the number of publications using morphometrics is increasing rapidly. However, the majority of these methods cannot be implemented in available software and therefore prosp- tive students often need to acquire detailed knowledge in informatics and statistics before applying them to their data. With acceleration in the accumulation of me- ods accompanying the emerging science of statistical shape analysis, it is becoming important to use tools that allow some autonomy. R easily helps ful?ll this need. Risalanguage andenvironment forstatisticalcomputingandgraphics. Although there is an increasing number of computer applications that perform morphometrics, using R has several advantages that confer to users considerable power and possible new horizons in a world that requires rapid adaptability.

Biological Distance Analysis

Author : Marin A. Pilloud
Publisher : Academic Press
ISBN 13 : 0128019719
Total Pages : 520 pages
Book Rating : 4.1/5 (28 download)

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Book Synopsis Biological Distance Analysis by : Marin A. Pilloud

Download or read book Biological Distance Analysis written by Marin A. Pilloud and published by Academic Press. This book was released on 2016-07-08 with total page 520 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biological Distance Analysis: Forensic and Bioarchaeological Perspectives synthesizes research within the realm of biological distance analysis, highlighting current work within the field and discussing future directions. The book is divided into three main sections. The first section clearly outlines datasets and methods within biological distance analysis, beginning with a brief history of the field and how it has progressed to its current state. The second section focuses on approaches using the individual within a forensic context, including ancestry estimation and case studies. The final section concentrates on population-based bioarchaeological approaches, providing key techniques and examples from archaeological samples. The volume also includes an appendix with additional resources available to those interested in biological distance analyses. - Defines datasets and how they are used within biodistance analysis - Applies methodology to individual and population studies - Bridges the sub-fields of forensic anthropology and bioarchaeology - Highlights current research and future directions of biological distance analysis - Identifies statistical programs and datasets for use in biodistance analysis - Contains cases studies and thorough index for those interested in biological distance analyses

Innovations for Shape Analysis

Author : Michael Breuß
Publisher : Springer
ISBN 13 : 9783642442155
Total Pages : 0 pages
Book Rating : 4.4/5 (421 download)

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Book Synopsis Innovations for Shape Analysis by : Michael Breuß

Download or read book Innovations for Shape Analysis written by Michael Breuß and published by Springer. This book was released on 2015-02-08 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: The concept of 'shape' is at the heart of image processing and computer vision, yet researchers still have some way to go to replicate the human brain's ability to extrapolate meaning from the most basic of outlines. This volume reflects the advances of the last decade, which have also opened up tough new challenges in image processing. Today's applications require flexible models as well as efficient, mathematically justified algorithms that allow data processing within an acceptable timeframe. Examining important topics in continuous-scale and discrete modeling, as well as in modern algorithms, the book is the product of a key seminar focused on innovations in the field. It is a thorough introduction to the latest technology, especially given the tutorial style of a number of chapters. It also succeeds in identifying promising avenues for future research. The topics covered include mathematical morphology, skeletonization, statistical shape modeling, continuous-scale shape models such as partial differential equations and the theory of discrete shape descriptors. Some authors highlight new areas of enquiry such as partite skeletons, multi-component shapes, deformable shape models, and the use of distance fields. Combining the latest theoretical analysis with cutting-edge applications, this book will attract both academics and engineers.

Hands

Author : Ulf Grenander
Publisher : Springer Science & Business Media
ISBN 13 : 1461230462
Total Pages : 164 pages
Book Rating : 4.4/5 (612 download)

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Book Synopsis Hands by : Ulf Grenander

Download or read book Hands written by Ulf Grenander and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 164 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this book a global shape model is developed and applied to the analysis of real pictures acquired with a visible light camera under varying conditions of optical degradation. Computational feasibility of the algorithms derived from this model is achieved by analytical means. The aim is to develop methods for image understanding based on structured restoration, for example automatic detection of abnormalities. We also want to find the limits of applicability of the algorithms. This is done by making the optical degradations more and more severe until the algorithms no longer succeed in their task. This computer experiment in pattern theory is one of several. The others, LEAVES, X-RAYS, and RANGE are described elsewhere. This book is suitable for an advanced undergraduate or graduate seminar in pattern theory, or as an accompanying book for applied probability, computer vision, or pattern recognition.

Digital Human Modeling

Author : Vincent D. Duffy
Publisher : Springer
ISBN 13 : 3540733213
Total Pages : 1083 pages
Book Rating : 4.5/5 (47 download)

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Book Synopsis Digital Human Modeling by : Vincent D. Duffy

Download or read book Digital Human Modeling written by Vincent D. Duffy and published by Springer. This book was released on 2007-08-24 with total page 1083 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the First International Conference on Digital Human Modeling, DHM 2007, held in Beijing, China in July 2007. The papers thoroughly cover the thematic area of digital human modeling, addressing the following major topics: shape and movement modeling and anthropometry, building and applying virtual humans, medical and rehabilitation applications, as well as industrial and ergonomic applications.

Modern Morphometrics in Physical Anthropology

Author : Dennis E. Slice
Publisher : Springer Science & Business Media
ISBN 13 : 0387276149
Total Pages : 392 pages
Book Rating : 4.3/5 (872 download)

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Book Synopsis Modern Morphometrics in Physical Anthropology by : Dennis E. Slice

Download or read book Modern Morphometrics in Physical Anthropology written by Dennis E. Slice and published by Springer Science & Business Media. This book was released on 2006-06-01 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: Morphometrics has undergone a revolutionary transformation in the past two decades as new methods have been developed to address shortcomings in the traditional multivirate analysis of linear distances, angles, and indices. While there is much active research in the field, the new approaches to shape analysis are already making significant and ever-increasing contributions to biological research, including physical anthropology. Modern Morphometrics in Physical Anthropology highlights the basic machinery of the most important methods, while introducing novel extensions to these methods and illustrating how they provide enhanced results compared to more traditional approaches. Modern Morphometrics in Physical Anthropology provides a comprehensive sampling of the applications of modern, sophisticated methods of shape analysis in anthropology, and serves as a starting point for the exploration of these practices by students and researchers who might otherwise lack the local expertise or training to get started. This text is an important resource for the general morphometric community that includes ecologists, evolutionary biologists, systematists, and medical researchers.