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Morphometrics With R
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Book Synopsis Morphometrics with R by : Julien Claude
Download or read book Morphometrics with R written by Julien Claude and published by Springer Science & Business Media. This book was released on 2008-12-15 with total page 317 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book aims to explain how to use R to perform morphometrics. Morpho- tric analysis is the study of shape and size variations and covariations and their covariations with other variables. Morphometrics is thus deeply rooted within stat- tical sciences. While most applications concern biology, morphometrics is becoming common tools used in archeological, palaeontological, geographical, or medicine disciplines. Since the recent formalizations of some of the ideas of predecessors, such as D’arcy Thompson, and thanks to the development of computer techno- gies and new ways for appraising shape changes and variation, morphometrics have undergone, and are still undergoing, a revolution. Most techniques dealing with s- tistical shape analysis have been developed in the last three decades, and the number of publications using morphometrics is increasing rapidly. However, the majority of these methods cannot be implemented in available software and therefore prosp- tive students often need to acquire detailed knowledge in informatics and statistics before applying them to their data. With acceleration in the accumulation of me- ods accompanying the emerging science of statistical shape analysis, it is becoming important to use tools that allow some autonomy. R easily helps ful?ll this need. Risalanguage andenvironment forstatisticalcomputingandgraphics. Although there is an increasing number of computer applications that perform morphometrics, using R has several advantages that confer to users considerable power and possible new horizons in a world that requires rapid adaptability.
Book Synopsis Multivariate Morphometrics by : R. A. Reyment
Download or read book Multivariate Morphometrics written by R. A. Reyment and published by . This book was released on 1984 with total page 252 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Geometric Morphometrics for Biologists by : Miriam Leah Zelditch
Download or read book Geometric Morphometrics for Biologists written by Miriam Leah Zelditch and published by Academic Press. This book was released on 2012-09-24 with total page 488 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first edition of Geometric Morphometrics for Biologists has been the primary resource for teaching modern geometric methods of shape analysis to biologists who have a stronger background in biology than in multivariate statistics and matrix algebra. These geometric methods are appealing to biologists who approach the study of shape from a variety of perspectives, from clinical to evolutionary, because they incorporate the geometry of organisms throughout the data analysis. The second edition of this book retains the emphasis on accessible explanations, and the copious illustrations and examples of the first, updating the treatment of both theory and practice. The second edition represents the current state-of-the-art and adds new examples and summarizes recent literature, as well as provides an overview of new software and step-by-step guidance through details of carrying out the analyses. Contains updated coverage of methods, especially for sampling complex curves and 3D forms and a new chapter on applications of geometric morphometrics to forensics Offers a reorganization of chapters to streamline learning basic concepts Presents detailed instructions for conducting analyses with freely available, easy to use software Provides numerous illustrations, including graphical presentations of important theoretical concepts and demonstrations of alternative approaches to presenting results
Book Synopsis An Invariant Approach to Statistical Analysis of Shapes by : Subhash R. Lele
Download or read book An Invariant Approach to Statistical Analysis of Shapes written by Subhash R. Lele and published by CRC Press. This book was released on 2001-01-19 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: Natural scientists perceive and classify organisms primarily on the basis of their appearance and structure- their form , defined as that characteristic remaining invariant after translation, rotation, and possibly reflection of the object. The quantitative study of form and form change comprises the field of morphometrics. For morphometrics to succeed, it needs techniques that not only satisfy mathematical and statistical rigor but also attend to the scientific issues. An Invariant Approach to the Statistical Analysis of Shapes results from a long and fruitful collaboration between a mathematical statistician and a biologist. Together they have developed a methodology that addresses the importance of scientific relevance, biological variability, and invariance of the statistical and scientific inferences with respect to the arbitrary choice of the coordinate system. They present the history and foundations of morphometrics, discuss the various kinds of data used in the analysis of form, and provide justification for choosing landmark coordinates as a preferred data type. They describe the statistical models used to represent intra-population variability of landmark data and show that arbitrary translation, rotation, and reflection of the objects introduce infinitely many nuisance parameters. The most fundamental part of morphometrics-comparison of forms-receives in-depth treatment, as does the study of growth and growth patterns, classification, clustering, and asymmetry. Morphometrics has only recently begun to consider the invariance principle and its implications for the study of biological form. With the advantage of dual perspectives, An Invariant Approach to the Statistical Analysis of Shapes stands as a unique and important work that brings a decade's worth of innovative methods, observations, and insights to an audience of both statisticians and biologists.
Book Synopsis Modern Morphometrics in Physical Anthropology by : Dennis E. Slice
Download or read book Modern Morphometrics in Physical Anthropology written by Dennis E. Slice and published by Springer Science & Business Media. This book was released on 2006-06-01 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: Morphometrics has undergone a revolutionary transformation in the past two decades as new methods have been developed to address shortcomings in the traditional multivirate analysis of linear distances, angles, and indices. While there is much active research in the field, the new approaches to shape analysis are already making significant and ever-increasing contributions to biological research, including physical anthropology. Modern Morphometrics in Physical Anthropology highlights the basic machinery of the most important methods, while introducing novel extensions to these methods and illustrating how they provide enhanced results compared to more traditional approaches. Modern Morphometrics in Physical Anthropology provides a comprehensive sampling of the applications of modern, sophisticated methods of shape analysis in anthropology, and serves as a starting point for the exploration of these practices by students and researchers who might otherwise lack the local expertise or training to get started. This text is an important resource for the general morphometric community that includes ecologists, evolutionary biologists, systematists, and medical researchers.
Book Synopsis Morphometric Tools for Landmark Data by : Fred L. Bookstein
Download or read book Morphometric Tools for Landmark Data written by Fred L. Bookstein and published by Cambridge University Press. This book was released on 1991 with total page 459 pages. Available in PDF, EPUB and Kindle. Book excerpt: This first systematic survey of the subject combines multivariate statistical analysis, geometry, and biomathematics.
Download or read book The R Book written by Michael J. Crawley and published by John Wiley & Sons. This book was released on 2007-06-13 with total page 953 pages. Available in PDF, EPUB and Kindle. Book excerpt: The high-level language of R is recognized as one of the mostpowerful and flexible statistical software environments, and israpidly becoming the standard setting for quantitative analysis,statistics and graphics. R provides free access to unrivalledcoverage and cutting-edge applications, enabling the user to applynumerous statistical methods ranging from simple regression to timeseries or multivariate analysis. Building on the success of the author’s bestsellingStatistics: An Introduction using R, The R Book ispacked with worked examples, providing an all inclusive guide to R,ideal for novice and more accomplished users alike. The bookassumes no background in statistics or computing and introduces theadvantages of the R environment, detailing its applications in awide range of disciplines. Provides the first comprehensive reference manual for the Rlanguage, including practical guidance and full coverage of thegraphics facilities. Introduces all the statistical models covered by R, beginningwith simple classical tests such as chi-square and t-test. Proceeds to examine more advance methods, from regression andanalysis of variance, through to generalized linear models,generalized mixed models, time series, spatial statistics,multivariate statistics and much more. The R Book is aimed at undergraduates, postgraduates andprofessionals in science, engineering and medicine. It is alsoideal for students and professionals in statistics, economics,geography and the social sciences.
Book Synopsis Statistical Shape Analysis by : Ian L. Dryden
Download or read book Statistical Shape Analysis written by Ian L. Dryden and published by John Wiley & Sons. This book was released on 2016-06-28 with total page 496 pages. Available in PDF, EPUB and Kindle. Book excerpt: A thoroughly revised and updated edition of this introduction to modern statistical methods for shape analysis Shape analysis is an important tool in the many disciplines where objects are compared using geometrical features. Examples include comparing brain shape in schizophrenia; investigating protein molecules in bioinformatics; and describing growth of organisms in biology. This book is a significant update of the highly-regarded `Statistical Shape Analysis’ by the same authors. The new edition lays the foundations of landmark shape analysis, including geometrical concepts and statistical techniques, and extends to include analysis of curves, surfaces, images and other types of object data. Key definitions and concepts are discussed throughout, and the relative merits of different approaches are presented. The authors have included substantial new material on recent statistical developments and offer numerous examples throughout the text. Concepts are introduced in an accessible manner, while retaining sufficient detail for more specialist statisticians to appreciate the challenges and opportunities of this new field. Computer code has been included for instructional use, along with exercises to enable readers to implement the applications themselves in R and to follow the key ideas by hands-on analysis. Statistical Shape Analysis: with Applications in R will offer a valuable introduction to this fast-moving research area for statisticians and other applied scientists working in diverse areas, including archaeology, bioinformatics, biology, chemistry, computer science, medicine, morphometics and image analysis .
Book Synopsis Statistical Shape and Deformation Analysis by : Guoyan Zheng
Download or read book Statistical Shape and Deformation Analysis written by Guoyan Zheng and published by Academic Press. This book was released on 2017-03-23 with total page 508 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical Shape and Deformation Analysis: Methods, Implementation and Applications contributes enormously to solving different problems in patient care and physical anthropology, ranging from improved automatic registration and segmentation in medical image computing to the study of genetics, evolution and comparative form in physical anthropology and biology. This book gives a clear description of the concepts, methods, algorithms and techniques developed over the last three decades that is followed by examples of their implementation using open source software. Applications of statistical shape and deformation analysis are given for a wide variety of fields, including biometry, anthropology, medical image analysis and clinical practice. Presents an accessible introduction to the basic concepts, methods, algorithms and techniques in statistical shape and deformation analysis Includes implementation examples using open source software Covers real-life applications of statistical shape and deformation analysis methods
Book Synopsis An Introduction to Applied Multivariate Analysis with R by : Brian Everitt
Download or read book An Introduction to Applied Multivariate Analysis with R written by Brian Everitt and published by Springer Science & Business Media. This book was released on 2011-04-23 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt: The majority of data sets collected by researchers in all disciplines are multivariate, meaning that several measurements, observations, or recordings are taken on each of the units in the data set. These units might be human subjects, archaeological artifacts, countries, or a vast variety of other things. In a few cases, it may be sensible to isolate each variable and study it separately, but in most instances all the variables need to be examined simultaneously in order to fully grasp the structure and key features of the data. For this purpose, one or another method of multivariate analysis might be helpful, and it is with such methods that this book is largely concerned. Multivariate analysis includes methods both for describing and exploring such data and for making formal inferences about them. The aim of all the techniques is, in general sense, to display or extract the signal in the data in the presence of noise and to find out what the data show us in the midst of their apparent chaos. An Introduction to Applied Multivariate Analysis with R explores the correct application of these methods so as to extract as much information as possible from the data at hand, particularly as some type of graphical representation, via the R software. Throughout the book, the authors give many examples of R code used to apply the multivariate techniques to multivariate data.
Book Synopsis Morphological Integration by : Everett C. Olson
Download or read book Morphological Integration written by Everett C. Olson and published by University of Chicago Press. This book was released on 1999-10 with total page 380 pages. Available in PDF, EPUB and Kindle. Book excerpt: Despite recent advances in genetics, development, anatomy, systematics, and morphometrics, the synthesis of ideas and research agenda put forth in the classic Morphological Integration remains remarkably fresh, timely, and relevant. Pioneers in reexamining morphology, Everett Olson and Robert Miller were among the first to explore the concept of the integrated organism in both living and extinct populations. In a new foreword and afterword, biologists Barry Chernoff and Paul Magwene summarize the landmark achievements made by Olson and Miller and bring matters discussed in the book up to date, suggest new methods, and accentuate the importance of continued research in morphological integration. Everett C. Olson was a professor at the University of Chicago and at the University of California, Los Angeles. He was a former president of the Society of Vertebrate Paleontology. Robert L. Miller was associate professor of geology at the University of Chicago, associate scientist in marine geology at the Woods Hole Oceanographic Institution, and a member of the board of editors of the Journal of Geology.
Book Synopsis Research Methods in Human Skeletal Biology by : Elizabeth A. DiGangi
Download or read book Research Methods in Human Skeletal Biology written by Elizabeth A. DiGangi and published by Academic Press. This book was released on 2012-09-25 with total page 574 pages. Available in PDF, EPUB and Kindle. Book excerpt: Research Methods in Human Skeletal Biology serves as the one location readers can go to not only learn how to conduct research in general, but how research is specifically conducted within human skeletal biology. It outlines the current types of research being conducted within each sub-specialty of skeletal biology, and gives the reader the tools to set up a research project in skeletal biology. It also suggests several ideas for potential projects. Each chapter has an inclusive bibliography, which can serve as a good jumpstart for project references. Provides a step-by-step guide to conducting research in human skeletal biology Covers diverse topics (sexing, aging, stature and ancestry estimation) and new technologies (histology, medical imaging, and geometric morphometrics) Excellent accompaniment to existing forensic anthropology or osteology works
Book Synopsis Digital Soil Morphometrics by : Alfred E. Hartemink
Download or read book Digital Soil Morphometrics written by Alfred E. Hartemink and published by Springer. This book was released on 2016-04-06 with total page 442 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is about digital soil morphometrics which is defined as the application of tools and techniques for measuring, mapping and quantifying soil profile properties, and deriving depth functions of soil properties. The book is structured along four research topics: (i) Soil profile properties, (ii) Soil profile imaging, (iii) Soil depth functions, and (iv) Use and applications. The pedon is at the heart of digital soil morphometrics. The use of digital soil morphometrics exceeds the pedology and soil classification purpose that it currently serves – it is used in rapid soil assessment that are needed in a range of biophysical studies. Digital soil morphometrics has the potential to enhance our understanding of soils and how we view them. The book presents highlights from The IUSS Inaugural Global Workshop on Digital Soil Morphometrics held in June 2015 in Madison, USA.
Book Synopsis Systematics and the Exploration of Life by : Philippe Grandcolas
Download or read book Systematics and the Exploration of Life written by Philippe Grandcolas and published by John Wiley & Sons. This book was released on 2021-03-31 with total page 242 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book's aim is to obtain and organize knowledge about the diversity of living things. Their epistomological and methodological fundamentals are explained in the framework of the biology of evolution. The methods of construction and use of phylogenetic trees are presented as well as the classification and description of taxa with the nomenclature rules.
Book Synopsis Numerical Taxonomy by : Joseph Felsenstein
Download or read book Numerical Taxonomy written by Joseph Felsenstein and published by Springer Science & Business Media. This book was released on 2013-06-29 with total page 655 pages. Available in PDF, EPUB and Kindle. Book excerpt: The NATO Advanced Study Institute on Numerical Taxonomy took place on the 4th - 16th of July, 1982, at the Kur- und Kongresshotel Residenz in Bad Windsheim, Federal Republic of Germany. This volume is the proceedings of that meeting, and contains papers by over two-thirds of the participants in the Institute. Numerical taxonomy has been attracting increased attention from systematists and evolutionary biologists. It is an area which has been marked by debate and conflict, sometimes bitter. Happily, this meeting took place in an atmosphere of "GemUtlichkeit", though scarcely of unanimity. I believe that these papers will show that there is an increased understanding by each taxonomic school of each others' positions. This augurs a period in which the debates become more concrete and specific. Let us hope that they take place in a scientific atmosphere which has occasionally been lacking in the past. Since the order of presentation of papers in the meeting was affected by time constraints, I have taken the liberty of rearranging them into a more coherent subject ordering. The first group of papers, taken from the opening and closing days of the meeting, debate philosophies of classification. The next two sections have papers on congruence, clustering and ordination. A notable concern of these participants is the comparison and testing of classifications. This has been missing from many previous discussions of numerical classification.
Download or read book Morphometrics written by Christina Wahl and published by BoD – Books on Demand. This book was released on 2012-03-02 with total page 124 pages. Available in PDF, EPUB and Kindle. Book excerpt: It is human nature to measure things, and this holds true for science as well as everyday life. The five papers in this book demonstrate the usefulness of a morphometric approach to a variety of subjects in natural history, including systematics, phenotypic plasticity in response to environmental variation, and ontogenetic adaptation. As our understanding of genetic control mechanisms and epigenetics has matured over the last several decades, it has become clear that morphometric assessment continues to be important to our overall understanding of natural variability in growth and form. The tremendous growth of our knowledge base during the last century has necessitated that we find new ways to measure and track greater detail as well as greater numbers of parameters among populations and individuals.
Book Synopsis Analysis of Phylogenetics and Evolution with R by : Emmanuel Paradis
Download or read book Analysis of Phylogenetics and Evolution with R written by Emmanuel Paradis and published by Springer Science & Business Media. This book was released on 2006-11-25 with total page 221 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.
