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Applications And Extensions Of Occupancy Estimation And Modeling Using Ecological Monitoring Data
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Book Synopsis Occupancy Estimation and Modeling by : Darryl I. MacKenzie
Download or read book Occupancy Estimation and Modeling written by Darryl I. MacKenzie and published by Elsevier. This book was released on 2017-11-17 with total page 668 pages. Available in PDF, EPUB and Kindle. Book excerpt: Occupancy Estimation and Modeling: Inferring Patterns and Dynamics of Species Occurrence, Second Edition, provides a synthesis of model-based approaches for analyzing presence-absence data, allowing for imperfect detection. Beginning from the relatively simple case of estimating the proportion of area or sampling units occupied at the time of surveying, the authors describe a wide variety of extensions that have been developed since the early 2000s. This provides an improved insight about species and community ecology, including, detection heterogeneity; correlated detections; spatial autocorrelation; multiple states or classes of occupancy; changes in occupancy over time; species co-occurrence; community-level modeling, and more. Occupancy Estimation and Modeling: Inferring Patterns and Dynamics of Species Occurrence, Second Edition has been greatly expanded and detail is provided regarding the estimation methods and examples of their application are given. Important study design recommendations are also covered to give a well rounded view of modeling. - Provides authoritative insights into the latest in occupancy modeling - Examines the latest methods in analyzing detection/no detection data surveys - Addresses critical issues of imperfect detectability and its effects on species occurrence estimation - Discusses important study design considerations such as defining sample units, sample size determination and optimal effort allocation
Book Synopsis Hierarchical Modeling and Inference in Ecology by : J. Andrew Royle
Download or read book Hierarchical Modeling and Inference in Ecology written by J. Andrew Royle and published by Elsevier. This book was released on 2008-10-15 with total page 463 pages. Available in PDF, EPUB and Kindle. Book excerpt: A guide to data collection, modeling and inference strategies for biological survey data using Bayesian and classical statistical methods.This book describes a general and flexible framework for modeling and inference in ecological systems based on hierarchical models, with a strict focus on the use of probability models and parametric inference. Hierarchical models represent a paradigm shift in the application of statistics to ecological inference problems because they combine explicit models of ecological system structure or dynamics with models of how ecological systems are observed. The principles of hierarchical modeling are developed and applied to problems in population, metapopulation, community, and metacommunity systems. The book provides the first synthetic treatment of many recent methodological advances in ecological modeling and unifies disparate methods and procedures.The authors apply principles of hierarchical modeling to ecological problems, including * occurrence or occupancy models for estimating species distribution* abundance models based on many sampling protocols, including distance sampling* capture-recapture models with individual effects* spatial capture-recapture models based on camera trapping and related methods* population and metapopulation dynamic models* models of biodiversity, community structure and dynamics - Wide variety of examples involving many taxa (birds, amphibians, mammals, insects, plants) - Development of classical, likelihood-based procedures for inference, as well as Bayesian methods of analysis - Detailed explanations describing the implementation of hierarchical models using freely available software such as R and WinBUGS - Computing support in technical appendices in an online companion web site
Book Synopsis Applied Hierarchical Modeling in Ecology: Analysis of Distribution, Abundance and Species Richness in R and BUGS by : Marc Kéry
Download or read book Applied Hierarchical Modeling in Ecology: Analysis of Distribution, Abundance and Species Richness in R and BUGS written by Marc Kéry and published by Academic Press. This book was released on 2020-10-10 with total page 822 pages. Available in PDF, EPUB and Kindle. Book excerpt: Applied Hierarchical Modeling in Ecology: Analysis of Distribution, Abundance and Species Richness in R and BUGS, Volume Two: Dynamic and Advanced Models provides a synthesis of the state-of-the-art in hierarchical models for plant and animal distribution, also focusing on the complex and more advanced models currently available. The book explains all procedures in the context of hierarchical models that represent a unified approach to ecological research, thus taking the reader from design, through data collection, and into analyses using a very powerful way of synthesizing data. - Makes ecological modeling accessible to people who are struggling to use complex or advanced modeling programs - Synthesizes current ecological models and explains how they are inter-connected - Contains numerous examples throughout the book, walking the reading through scenarios with both real and simulated data - Provides an ideal resource for ecologists working in R software and in BUGS software for more flexible Bayesian analyses
Book Synopsis Encyclopedia of Ecology by : Brian D. Fath
Download or read book Encyclopedia of Ecology written by Brian D. Fath and published by Elsevier. This book was released on 2018-08-23 with total page 2786 pages. Available in PDF, EPUB and Kindle. Book excerpt: Encyclopedia of Ecology, Second Edition, Four Volume Set continues the acclaimed work of the previous edition published in 2008. It covers all scales of biological organization, from organisms, to populations, to communities and ecosystems. Laboratory, field, simulation modelling, and theoretical approaches are presented to show how living systems sustain structure and function in space and time. New areas of focus include micro- and macro scales, molecular and genetic ecology, and global ecology (e.g., climate change, earth transformations, ecosystem services, and the food-water-energy nexus) are included. In addition, new, international experts in ecology contribute on a variety of topics. Offers the most broad-ranging and comprehensive resource available in the field of ecology Provides foundational content and suggests further reading Incorporates the expertise of over 500 outstanding investigators in the field of ecology, including top young scientists with both research and teaching experience Includes multimedia resources, such as an Interactive Map Viewer and links to a CSDMS (Community Surface Dynamics Modeling System), an open-source platform for modelers to share and link models dealing with earth system processes
Book Synopsis Spatial Capture-Recapture by : J. Andrew Royle
Download or read book Spatial Capture-Recapture written by J. Andrew Royle and published by Academic Press. This book was released on 2013-08-27 with total page 609 pages. Available in PDF, EPUB and Kindle. Book excerpt: Spatial Capture-Recapture provides a comprehensive how-to manual with detailed examples of spatial capture-recapture models based on current technology and knowledge. Spatial Capture-Recapture provides you with an extensive step-by-step analysis of many data sets using different software implementations. The authors' approach is practical – it embraces Bayesian and classical inference strategies to give the reader different options to get the job done. In addition, Spatial Capture-Recapture provides data sets, sample code and computing scripts in an R package. - Comprehensive reference on revolutionary new methods in ecology makes this the first and only book on the topic - Every methodological element has a detailed worked example with a code template, allowing you to learn by example - Includes an R package that contains all computer code and data sets on companion website
Book Synopsis Applications for Advancing Animal Ecology by : Michael L. Morrison
Download or read book Applications for Advancing Animal Ecology written by Michael L. Morrison and published by JHU Press. This book was released on 2021-05-11 with total page 260 pages. Available in PDF, EPUB and Kindle. Book excerpt: "The authors consider individual organisms before considering habitats; they demonstrate how to apply such an approach to animal ecology in the field. The book is meant for wildlife professionals who are interested in exploring what kinds of insights this alternative approach can yield"--
Book Synopsis Hidden Markov Models and Applications by : Nizar Bouguila
Download or read book Hidden Markov Models and Applications written by Nizar Bouguila and published by Springer Nature. This book was released on 2022-05-19 with total page 303 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on recent advances, approaches, theories, and applications related Hidden Markov Models (HMMs). In particular, the book presents recent inference frameworks and applications that consider HMMs. The authors discuss challenging problems that exist when considering HMMs for a specific task or application, such as estimation or selection, etc. The goal of this volume is to summarize the recent advances and modern approaches related to these problems. The book also reports advances on classic but difficult problems in HMMs such as inference and feature selection and describes real-world applications of HMMs from several domains. The book pertains to researchers and graduate students, who will gain a clear view of recent developments related to HMMs and their applications.
Book Synopsis Population Ecology in Practice by : Dennis L. Murray
Download or read book Population Ecology in Practice written by Dennis L. Murray and published by John Wiley & Sons. This book was released on 2020-02-10 with total page 448 pages. Available in PDF, EPUB and Kindle. Book excerpt: A synthesis of contemporary analytical and modeling approaches in population ecology The book provides an overview of the key analytical approaches that are currently used in demographic, genetic, and spatial analyses in population ecology. The chapters present current problems, introduce advances in analytical methods and models, and demonstrate the applications of quantitative methods to ecological data. The book covers new tools for designing robust field studies; estimation of abundance and demographic rates; matrix population models and analyses of population dynamics; and current approaches for genetic and spatial analysis. Each chapter is illustrated by empirical examples based on real datasets, with a companion website that offers online exercises and examples of computer code in the R statistical software platform. Fills a niche for a book that emphasizes applied aspects of population analysis Covers many of the current methods being used to analyse population dynamics and structure Illustrates the application of specific analytical methods through worked examples based on real datasets Offers readers the opportunity to work through examples or adapt the routines to their own datasets using computer code in the R statistical platform Population Ecology in Practice is an excellent book for upper-level undergraduate and graduate students taking courses in population ecology or ecological statistics, as well as established researchers needing a desktop reference for contemporary methods used to develop robust population assessments.
Book Synopsis Recent Advances on Sampling Methods and Educational Statistics by : Hon Keung Tony Ng
Download or read book Recent Advances on Sampling Methods and Educational Statistics written by Hon Keung Tony Ng and published by Springer Nature. This book was released on 2022-11-25 with total page 292 pages. Available in PDF, EPUB and Kindle. Book excerpt: This edited collection commemorates the career of Dr. S. Lynne Stokes by highlighting recent advances in her areas of research interest, emphasizing practical applications and future directions. It serves as a collective effort of leading statistical scientists who work at the cutting edge in statistical sampling. S. Lynne Stokes is Professor of Statistical Science and Director of the Data Science Institute at Southern Methodist University, and Senior Fellow at the National Institute of Statistical Sciences. She has enjoyed a distinguished research career, making fundamental contributions to a variety of fields in statistical sampling. Reflecting on Professor Stokes' main areas of research, this volume is structured into three main parts: I. ranked-set sampling, judgment post-stratified sampling, and capture-recapture methods II. nonsampling errors in statistical sampling III. educational and behavioral statistics. This collection will be of interest to researchers, advanced students, and professionals in the public and private sectors who would like to learn more about latest advancements in statistical sampling, particularly those who work in educational and behavioral statistics.
Book Synopsis Effective Ecological Monitoring by : Gene Likens
Download or read book Effective Ecological Monitoring written by Gene Likens and published by CSIRO PUBLISHING. This book was released on 2018-05-01 with total page 266 pages. Available in PDF, EPUB and Kindle. Book excerpt: Long-term monitoring programs are fundamental to understanding the natural environment and managing major environmental problems. Yet they are often done very poorly and ineffectively. This second edition of the highly acclaimed Effective Ecological Monitoring describes what makes monitoring programs successful and how to ensure that long-term monitoring studies persist. The book has been fully revised and updated but remains concise, illustrating key aspects of effective monitoring with case studies and examples. It includes new sections comparing surveillance-based and question-based monitoring, analysing environmental observation networks, and provides examples of adaptive monitoring. Based on the authors’ 80 years of collective experience in running long-term research and monitoring programs, Effective Ecological Monitoring is a valuable resource for the natural resource management, ecological and environmental science and policy communities.
Book Synopsis Estimating Presence and Abundance of Closed Populations by : George A. F. Seber
Download or read book Estimating Presence and Abundance of Closed Populations written by George A. F. Seber and published by Springer Nature. This book was released on 2024-01-02 with total page 734 pages. Available in PDF, EPUB and Kindle. Book excerpt: This comprehensive book covers a wide variety of methods for estimating the sizes and related parameters of closed populations. With the effect of climate change, and human territory invasion, we have seen huge species losses and a major biodiversity decline. Populations include plants, trees, various land and sea animals, and some human populations. With such a diversity of populations, an extensive variety of different methods are described with the collection of different types of data. For example, we have count data from plot sampling, which can also allow for incomplete detection. There is a large chapter on occupancy methods where a major interest is determining whether a particular species is present or not. Citizen and opportunistic survey data can also be incorporated. A related topic is species methods, where species richness and species' interactions are of interest. A variety of distance methods are discussed. One can use distances from points and lines, as well as nearest neighbor distances. The applications are extensive, and include marine, acoustic, and aerial surveys, using multiple observers or detection devices. Line intercept measurements have a role to play such as, for example, estimating parameters relating to plant coverage. An increasingly important class of removal methods considers successive “removals" from a population, with physical removal or "removal" by capture-recapture of marked individuals. With the change-in-ratio method, removals are taken from two or more classes, e.g., males and females. Effort data used for removals can also be used. A very important method for estimating abundance is the use of capture-recapture data collected discretely or continuously and can be analysed using both frequency and Bayesian methods. Computational aspects of fitting Bayesian models are described. A related topic of growing interest is the use of spatial and camera methods. With the plethora of models there has been a corresponding development of various computational methods and packages, which are often mentioned throughout. Covariate data is being used more frequently, which can reduce the number of unknown parameters by using logistic and loglinear models. An important computational aspect is that of model selection methods. The book provides a useful list of over 1400 references.
Book Synopsis Amphibians and reptiles by : Trevor Beebee
Download or read book Amphibians and reptiles written by Trevor Beebee and published by Pelagic Publishing Ltd. This book was released on 2013-07-01 with total page 178 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive guide to the native and non-native species of amphibian and reptile found in the British Isles. It covers the biology, ecology, conservation and identification of the British herpetofauna, and provides keys to adults and young.
Book Synopsis Analysis and Management of Animal Populations by : Byron K. Williams
Download or read book Analysis and Management of Animal Populations written by Byron K. Williams and published by Academic Press. This book was released on 2002-04-17 with total page 837 pages. Available in PDF, EPUB and Kindle. Book excerpt: Analysis and Management of Animal Populations deals with the processes involved in making informed decisions about the management of animal populations. It covers the modeling of population responses to management actions, the estimation of quantities needed in the modeling effort, and the application of these estimates and models to the development of sound management decisions. The book synthesizes and integrates in a single volume the methods associated with these themes, as they apply to ecological assessment and conservation of animal populations. Integrates population modeling, parameter estimation and decision-theoretic approaches to management in a single, cohesive framework Provides authoritative, state-of-the-art descriptions of quantitative approaches to modeling, estimation and decision-making Emphasizes the role of mathematical modeling in the conduct of science and management Utilizes a unifying biological context, consistent mathematical notation, and numerous biological examples
Book Synopsis Spatial Ecology and Conservation Modeling by : Robert Fletcher
Download or read book Spatial Ecology and Conservation Modeling written by Robert Fletcher and published by Springer. This book was released on 2019-02-15 with total page 531 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a foundation for modern applied ecology. Much of current ecology research and conservation addresses problems across landscapes and regions, focusing on spatial patterns and processes. This book is aimed at teaching fundamental concepts and focuses on learning-by-doing through the use of examples with the software R. It is intended to provide an entry-level, easily accessible foundation for students and practitioners interested in spatial ecology and conservation.
Book Synopsis Camera Traps in Animal Ecology by : Allan F. O'Connell
Download or read book Camera Traps in Animal Ecology written by Allan F. O'Connell and published by Springer Science & Business Media. This book was released on 2010-10-05 with total page 279 pages. Available in PDF, EPUB and Kindle. Book excerpt: Remote photography and infrared sensors are widely used in the sampling of wildlife populations worldwide, especially for cryptic or elusive species. Guiding the practitioner through the entire process of using camera traps, this book is the first to compile state-of-the-art sampling techniques for the purpose of conducting high-quality science or effective management. Chapters on the evaluation of equipment, field sampling designs, and data analysis methods provide a coherent framework for making inferences about the abundance, species richness, and occupancy of sampled animals. The volume introduces new models that will revolutionize use of camera data to estimate population density, such as the newly developed spatial capture–recapture models. It also includes richly detailed case studies of camera trap work on some of the world’s most charismatic, elusive, and endangered wildlife species. Indispensible to wildlife conservationists, ecologists, biologists, and conservation agencies around the world, the text provides a thorough review of the subject as well as a forecast for the use of remote photography in natural resource conservation over the next few decades.
Book Synopsis Models for Planning Wildlife Conservation in Large Landscapes by : Joshua Millspaugh
Download or read book Models for Planning Wildlife Conservation in Large Landscapes written by Joshua Millspaugh and published by Academic Press. This book was released on 2011-04-28 with total page 736 pages. Available in PDF, EPUB and Kindle. Book excerpt: A single-resource volume of information on the most current and effective techniques of wildlife modeling, Models for Planning Wildlife Conservation in Large Landscapes is appropriate for students and researchers alike. The unique blend of conceptual, methodological, and application chapters discusses research, applications and concepts of modeling and presents new ideas and strategies for wildlife habitat models used in conservation planning. The book makes important contributions to wildlife conservation of animals in several ways: (1) it highlights historical and contemporary advancements in the development of wildlife habitat models and their implementation in conservation planning; (2) it provides practical advice for the ecologist conducting such studies; and (3) it supplies directions for future research including new strategies for successful studies.Intended to provide a recipe for successful development of wildlife habitat models and their implementation in conservation planning, the book could be used in studying wildlife habitat models, conservation planning, and management techniques. Additionally it may be a supplemental text in courses dealing with quantitative assessment of wildlife populations. Additionally, the length of the book would be ideal for graduate student seminar course.Using wildlife habitat models in conservation planning is of considerable interest to wildlife biologists. With ever tightening budgets for wildlife research and planning activities, there is a growing need to use computer methods. Use of simulation models represents the single best alternative. However, it is imperative that these techniques be described in a single source. Moreover, biologists should be made aware of alternative modeling techniques. It is also important that practical guidance be provided to biologists along with a demonstration of utility of these procedures. Currently there is little guidance in the wildlife or natural resource planning literature on how best to incorporate wildlife planning activities, particularly community-based approaches. Now is the perfect time for a synthestic publication that clearly outlines the concepts and available methods, and illustrates them. - Only single resource book of information not only on various wildlife modeling techniques, but also with practical guidance on the demonstrated utility of each based on real-world conditions. - Provides concepts, methods and applications for wildlife ecologists and others within a GIS context. - Written by a team of subject-area experts
Book Synopsis Bringing Bayesian Models to Life by : Mevin B. Hooten
Download or read book Bringing Bayesian Models to Life written by Mevin B. Hooten and published by CRC Press. This book was released on 2019-05-15 with total page 430 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bringing Bayesian Models to Life empowers the reader to extend, enhance, and implement statistical models for ecological and environmental data analysis. We open the black box and show the reader how to connect modern statistical models to computer algorithms. These algorithms allow the user to fit models that answer their scientific questions without needing to rely on automated Bayesian software. We show how to handcraft statistical models that are useful in ecological and environmental science including: linear and generalized linear models, spatial and time series models, occupancy and capture-recapture models, animal movement models, spatio-temporal models, and integrated population-models. Features: R code implementing algorithms to fit Bayesian models using real and simulated data examples. A comprehensive review of statistical models commonly used in ecological and environmental science. Overview of Bayesian computational methods such as importance sampling, MCMC, and HMC. Derivations of the necessary components to construct statistical algorithms from scratch. Bringing Bayesian Models to Life contains a comprehensive treatment of models and associated algorithms for fitting the models to data. We provide detailed and annotated R code in each chapter and apply it to fit each model we present to either real or simulated data for instructional purposes. Our code shows how to create every result and figure in the book so that readers can use and modify it for their own analyses. We provide all code and data in an organized set of directories available at the authors' websites.
