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Analysis And Control Of Boolean Networks
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Book Synopsis Analysis and Control of Boolean Networks by : Daizhan Cheng
Download or read book Analysis and Control of Boolean Networks written by Daizhan Cheng and published by Springer Science & Business Media. This book was released on 2010-11-23 with total page 472 pages. Available in PDF, EPUB and Kindle. Book excerpt: Analysis and Control of Boolean Networks presents a systematic new approach to the investigation of Boolean control networks. The fundamental tool in this approach is a novel matrix product called the semi-tensor product (STP). Using the STP, a logical function can be expressed as a conventional discrete-time linear system. In the light of this linear expression, certain major issues concerning Boolean network topology – fixed points, cycles, transient times and basins of attractors – can be easily revealed by a set of formulae. This framework renders the state-space approach to dynamic control systems applicable to Boolean control networks. The bilinear-systemic representation of a Boolean control network makes it possible to investigate basic control problems including controllability, observability, stabilization, disturbance decoupling etc.
Book Synopsis Algorithms For Analysis, Inference, And Control Of Boolean Networks by : Akutsu Tatsuya
Download or read book Algorithms For Analysis, Inference, And Control Of Boolean Networks written by Akutsu Tatsuya and published by World Scientific. This book was released on 2018-02-13 with total page 228 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Boolean network (BN) is a mathematical model of genetic networks and other biological networks. Although extensive studies have been done on BNs from a viewpoint of complex systems, not so many studies have been undertaken from a computational viewpoint. This book presents rigorous algorithmic results on important computational problems on BNs, which include inference of a BN, detection of singleton and periodic attractors in a BN, and control of a BN. This book also presents algorithmic results on fundamental computational problems on probabilistic Boolean networks and a Boolean model of metabolic networks. Although most contents of the book are based on the work by the author and collaborators, other important computational results and techniques are also reviewed or explained. Contents: Preliminaries Boolean Networks Detection of Attractors Detection of Singleton Attractors Detection of Periodic Attractors Identification of Boolean Networks Control of Boolean Networks Predecessor and Observability Problems Semi-Tensor Product Approach Analysis of Metabolic Networks Probabilistic Boolean Networks Identification of Probabilistic Boolean Networks Control of Probabilistic Boolean Networks Readership: Graduate students and researchers working on string theory and related topics. Keywords: Boolean Networks;Bioinformatics;Systems Biology;Combinatorial Algorithms;AttractorsReview: Key Features: Unique book focusing on computational aspects of Boolean networks Provide computational foundations on Boolean networks Contain recent and up-to-date results on algorithms for Boolean networks
Book Synopsis Probabilistic Boolean Networks by : Ilya Shmulevich
Download or read book Probabilistic Boolean Networks written by Ilya Shmulevich and published by SIAM. This book was released on 2010-01-21 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first comprehensive treatment of probabilistic Boolean networks, unifying different strands of current research and addressing emerging issues.
Book Synopsis Algebraic Biology by : Katsuhisa Horimoto
Download or read book Algebraic Biology written by Katsuhisa Horimoto and published by Springer Science & Business Media. This book was released on 2008-07-18 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Third International Conference on Algebraic Biology, AB 2008, held at the Castle of Hagenberg, Austria in July 2008 as part of the RISC Summer 2008, organized by the Research Institute for Symbolic Computation. The 14 revised full papers presented together with 3 tutorial lectures were carefully reviewed and selected from 27 submissions. The conference is the interdisciplinary forum for the presentation of research on all aspects of applications of symbolic computation (computer algebra, computational logic, and related methods) to various issues in biology and life sciences as well as other problems in biology being approached with symbolic methods.
Book Synopsis An Introduction to Semi-tensor Product of Matrices and Its Applications by : Dai-Zhan Cheng
Download or read book An Introduction to Semi-tensor Product of Matrices and Its Applications written by Dai-Zhan Cheng and published by World Scientific. This book was released on 2012 with total page 610 pages. Available in PDF, EPUB and Kindle. Book excerpt: A generalization of Conventional Matrix Product (CMP), called the Semi-Tensor Product (STP), is proposed. It extends the CMP to two arbitrary matrices and maintains all fundamental properties of CMP. In addition, it has a pseudo-commutative property, which makes it more superior to CMP. The STP was proposed by the authors to deal with higher-dimensional data as well as multilinear mappings. After over a decade of development, STP has been proven to be a powerful tool in dealing with nonlinear and logical calculations.This book is a comprehensive introduction to the theory of STP and its various applications, including logical function, fuzzy control, Boolean networks, analysis and control of nonlinear systems, amongst others.
Book Synopsis Observer Design for Control and Fault Diagnosis of Boolean Networks by : Zhihua Zhang
Download or read book Observer Design for Control and Fault Diagnosis of Boolean Networks written by Zhihua Zhang and published by Springer Nature. This book was released on 2021-12-11 with total page 177 pages. Available in PDF, EPUB and Kindle. Book excerpt: Boolean control networks (BCNs) are a kind of parameter-free model, which can be used to approximate the qualitative behavior of biological systems. After converting into a model similar to the standard discrete-time state-space model, control-theoretic problems of BCNs can be studied. In control theory, state observers can provide state estimation for any other applications. Reconstructibility condition is necessary for the existence of state observers. In this thesis explicit and recursive methods have been developed for reconstructibility analysis. Then, an approach to design Luenberger-like observer has been proposed, which works in a two-step process (i.e. predict and update). If a BCN is reconstructible, then an accurate state estimate can be provided by the observer no later than the minimal reconstructibility index. For a wide range of applications the approach has been extended to enable design of unknown input observer, distributed observers and reduced-order observer. The performance of the observers has been evaluated thoroughly. Furthermore, methods for output tracking control and fault diagnosis of BCNs have been developed. Finally, the developed schemes are tested with numerical examples.
Book Synopsis Analysis and Control of Finite-Valued Systems by : Haitao Li
Download or read book Analysis and Control of Finite-Valued Systems written by Haitao Li and published by CRC Press. This book was released on 2018-05-11 with total page 286 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive work in finite-value systems that covers the latest achievements using the semi-tensor product method, on various kinds of finite-value systems. These results occupy the highest position in the analysis and control of this field. It not only covers all aspects of research in finite-value systems, but also presents the mathematical derivation for each conclusion in depth. The book contains examples to provide a better understanding of the practical applications of finite-value systems. It will serve as a textbook for graduate students of Cybernetics, Mathematical, and Biology, and a reference for readers interested in the theory of finite-value systems.
Book Synopsis Probabilistic Boolean Networks by : Ilya Shmulevich
Download or read book Probabilistic Boolean Networks written by Ilya Shmulevich and published by SIAM. This book was released on 2010-01-01 with total page 277 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the first comprehensive treatment of probabilistic Boolean networks (PBNs), an important model class for studying genetic regulatory networks. This book covers basic model properties, including the relationships between network structure and dynamics, steady-state analysis, and relationships to other model classes." "Researchers in mathematics, computer science, and engineering are exposed to important applications in systems biology and presented with ample opportunities for developing new approaches and methods. The book is also appropriate for advanced undergraduates, graduate students, and scientists working in the fields of computational biology, genomic signal processing, control and systems theory, and computer science.
Book Synopsis Information Processing and Biological Systems by : Samuli Niiranen
Download or read book Information Processing and Biological Systems written by Samuli Niiranen and published by Springer Science & Business Media. This book was released on 2011-03-10 with total page 230 pages. Available in PDF, EPUB and Kindle. Book excerpt: Living beings require constant information processing for survival. In cells, information is being processed and propagated at various levels, from the gene regulatory network to chemical pathways, to the interaction with the environment. How this is achieved and how information is coded is still poorly understood. For example, what a cell interprets as information in the temporal level of an mRNA and what is interpreted as noise remains an open question. Recently, information theoretical methods and other tools, developed in the context of engineering and natural sciences, have been applied to study diverse biological processes. This book covers the latest findings on how information is processed in various biological processes, ranging from information processing and propagation in gene regulatory networks to information processing in natural language. An overview is presented of the state-of-the-art in information processing in biological systems and the opinion of current leaders in this research field on future research directions.
Book Synopsis Analysis and Control of Finite-Valued Systems by : Haitao Li
Download or read book Analysis and Control of Finite-Valued Systems written by Haitao Li and published by CRC Press. This book was released on 2018-05-11 with total page 276 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive work in finite-value systems that covers the latest achievements using the semi-tensor product method, on various kinds of finite-value systems. These results occupy the highest position in the analysis and control of this field. It not only covers all aspects of research in finite-value systems, but also presents the mathematical derivation for each conclusion in depth. The book contains examples to provide a better understanding of the practical applications of finite-value systems. It will serve as a textbook for graduate students of Cybernetics, Mathematical, and Biology, and a reference for readers interested in the theory of finite-value systems.
Book Synopsis Control Theory and Systems Biology by : Pablo A. Iglesias
Download or read book Control Theory and Systems Biology written by Pablo A. Iglesias and published by MIT Press. This book was released on 2010 with total page 359 pages. Available in PDF, EPUB and Kindle. Book excerpt: A survey of how engineering techniques from control and systems theory can be used to help biologists understand the behavior of cellular systems.
Book Synopsis Genomic Signal Processing by : Ilya Shmulevich
Download or read book Genomic Signal Processing written by Ilya Shmulevich and published by Princeton University Press. This book was released on 2014-09-08 with total page 314 pages. Available in PDF, EPUB and Kindle. Book excerpt: Genomic signal processing (GSP) can be defined as the analysis, processing, and use of genomic signals to gain biological knowledge, and the translation of that knowledge into systems-based applications that can be used to diagnose and treat genetic diseases. Situated at the crossroads of engineering, biology, mathematics, statistics, and computer science, GSP requires the development of both nonlinear dynamical models that adequately represent genomic regulation, and diagnostic and therapeutic tools based on these models. This book facilitates these developments by providing rigorous mathematical definitions and propositions for the main elements of GSP and by paying attention to the validity of models relative to the data. Ilya Shmulevich and Edward Dougherty cover real-world situations and explain their mathematical modeling in relation to systems biology and systems medicine. Genomic Signal Processing makes a major contribution to computational biology, systems biology, and translational genomics by providing a self-contained explanation of the fundamental mathematical issues facing researchers in four areas: classification, clustering, network modeling, and network intervention.
Book Synopsis Handbook on Biological Networks by : Stefano Boccaletti
Download or read book Handbook on Biological Networks written by Stefano Boccaletti and published by World Scientific. This book was released on 2010 with total page 465 pages. Available in PDF, EPUB and Kindle. Book excerpt: Networked systems are all around us. The accumulated evidence of systems as complex as a cell cannot be fully understood by studying only their isolated constituents, giving rise to a new area of interest in research ? the study of complex networks. In a broad sense, biological networks have been one of the most studied networks, and the field has benefited from many important contributions. By understanding and modeling the structure of a biological network, a better perception of its dynamical and functional behavior is to be expected. This unique book compiles the most relevant results and novel insights provided by network theory in the biological sciences, ranging from the structure and dynamics of the brain to cellular and protein networks and to population-level biology.
Download or read book Boolean Functions written by Yves Crama and published by Cambridge University Press. This book was released on 2011-05-16 with total page 711 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written by prominent experts in the field, this monograph provides the first comprehensive, unified presentation of the structural, algorithmic and applied aspects of the theory of Boolean functions. The book focuses on algebraic representations of Boolean functions, especially disjunctive and conjunctive normal form representations. This framework looks at the fundamental elements of the theory (Boolean equations and satisfiability problems, prime implicants and associated short representations, dualization), an in-depth study of special classes of Boolean functions (quadratic, Horn, shellable, regular, threshold, read-once functions and their characterization by functional equations) and two fruitful generalizations of the concept of Boolean functions (partially defined functions and pseudo-Boolean functions). Several topics are presented here in book form for the first time. Because of the depth and breadth and its emphasis on algorithms and applications, this monograph will have special appeal for researchers and graduate students in discrete mathematics, operations research, computer science, engineering and economics.
Book Synopsis Boolean Models and Methods in Mathematics, Computer Science, and Engineering by : Yves Crama
Download or read book Boolean Models and Methods in Mathematics, Computer Science, and Engineering written by Yves Crama and published by Cambridge University Press. This book was released on 2010-06-28 with total page 781 pages. Available in PDF, EPUB and Kindle. Book excerpt: A collection of papers written by prominent experts that examine a variety of advanced topics related to Boolean functions and expressions.
Book Synopsis Logic Synthesis for Genetic Diseases by : Pey-Chang Kent Lin
Download or read book Logic Synthesis for Genetic Diseases written by Pey-Chang Kent Lin and published by Springer Science & Business Media. This book was released on 2013-10-31 with total page 100 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book brings to bear a body of logic synthesis techniques, in order to contribute to the analysis and control of Boolean Networks (BN) for modeling genetic diseases such as cancer. The authors provide several VLSI logic techniques to model the genetic disease behavior as a BN, with powerful implicit enumeration techniques. Coverage also includes techniques from VLSI testing to control a faulty BN, transforming its behavior to a healthy BN, potentially aiding in efforts to find the best candidates for treatment of genetic diseases.
Book Synopsis Computer Aided Verification by : Shuvendu K. Lahiri
Download or read book Computer Aided Verification written by Shuvendu K. Lahiri and published by Springer Nature. This book was released on 2020-07-15 with total page 682 pages. Available in PDF, EPUB and Kindle. Book excerpt: The open access two-volume set LNCS 12224 and 12225 constitutes the refereed proceedings of the 32st International Conference on Computer Aided Verification, CAV 2020, held in Los Angeles, CA, USA, in July 2020.* The 43 full papers presented together with 18 tool papers and 4 case studies, were carefully reviewed and selected from 240 submissions. The papers were organized in the following topical sections: Part I: AI verification; blockchain and Security; Concurrency; hardware verification and decision procedures; and hybrid and dynamic systems. Part II: model checking; software verification; stochastic systems; and synthesis. *The conference was held virtually due to the COVID-19 pandemic.
