Stochastic Dynamics Of Reacting Biomolecules

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Stochastic Dynamics of Reacting Biomolecules

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Author : Werner Ebeling
Publisher : World Scientific
ISBN 13 : 981448749X
Total Pages : 344 pages
Book Rating : 4.8/5 (144 download)

Book Synopsis Stochastic Dynamics of Reacting Biomolecules by : Werner Ebeling

Download or read book Stochastic Dynamics of Reacting Biomolecules written by Werner Ebeling and published by World Scientific. This book was released on 2003-01-29 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is a book about the physical processes in reacting complex molecules, particularly biomolecules. In the past decade scientists from different fields such as medicine, biology, chemistry and physics have collected a huge amount of data about the structure, dynamics and functioning of biomolecules. Great progress has been achieved in exploring the structure of complex molecules. However, there is still a lack of understanding of the dynamics and functioning of biological macromolecules. In particular this refers to enzymes, which are the basic molecular machines working in living systems. This book contributes to the exploration of the physical mechanisms of these processes, focusing on critical aspects such as the role of nonlinear excitations and of stochastic effects. An extensive range of original results has been obtained in the last few years by the authors, and these results are presented together with a comprehensive survey of the state of the art in the field. Contents:Introduction to the Reaction Theory and Cluster Dynamics of Enzymes (W Ebeling, A Netrebko & Yu Romanovsky)Tools of Stochastic Dynamics (L Schimansky-Geier & P Talkner)Motion of Test Particles in a 2-D Potential Landscape (O A Chichigina, A V Netrebko & N V Netrebko)Microscopic Simulations of Activation and Dissociation (W Ebeling, V Yu Podlipchuk, M G Sapeshinsky & A A Valuev)Excitations on Rings of Molecules (A Chetverikov, W Ebeling, M Jenssen & Yu Romanovsky)Fermi Resonance and Kramers Problem in 2-D Force Field (S V Kroo, A V Netrebko, Yu M Romanovsky & L Schimansky-Geier)Molecular Scissors. Cluster Model of Acetylcholinesterase (A Yu Chikishev, S V Kroo, A V Netrebko, N V Netrebko & Yu Romanovsky)Dynamics of Proton Transfer in the Active Site of Chymotrypsin (A Yu Chikishev, B A Grishanin & E V Shuvalova)On the Damping of Cluster Oscillations in Protein Molecules (A Yu Chikishev, A V Netrebko & Yu M Romanovsky)Protein Dynamics and New Approaches to the Molecular Mechanisms of Protein Functioning (K V Shaitan) Readership: Researchers and graduate students in physics, biophysics, molecular biology and the life sciences; experts on nonlinear dynamics and the stochastic process in molecular systems and biomolecules. Keywords:Stochastic Dynamics;Reacting Complex Molecules;Biomolecules;Enzymatic Reactions;Molecular Dynamics;Nonlinear Excitations;Resonances

Stochastic Dynamics in Computational Biology

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Author : Stefanie Winkelmann
Publisher : Springer Nature
ISBN 13 : 3030623874
Total Pages : 284 pages
Book Rating : 4.0/5 (36 download)

Book Synopsis Stochastic Dynamics in Computational Biology by : Stefanie Winkelmann

Download or read book Stochastic Dynamics in Computational Biology written by Stefanie Winkelmann and published by Springer Nature. This book was released on 2021-01-04 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt: The aim of this book is to provide a well-structured and coherent overview of existing mathematical modeling approaches for biochemical reaction systems, investigating relations between both the conventional models and several types of deterministic-stochastic hybrid model recombinations. Another main objective is to illustrate and compare diverse numerical simulation schemes and their computational effort. Unlike related works, this book presents a broad scope in its applications, from offering a detailed introduction to hybrid approaches for the case of multiple population scales to discussing the setting of time-scale separation resulting from widely varying firing rates of reaction channels. Additionally, it also addresses modeling approaches for non well-mixed reaction-diffusion dynamics, including deterministic and stochastic PDEs and spatiotemporal master equations. Finally, by translating and incorporating complex theory to a level accessible to non-mathematicians, this book effectively bridges the gap between mathematical research in computational biology and its practical use in biological, biochemical, and biomedical systems.

Stochastic Dynamics for Systems Biology

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Author : Christian Mazza
Publisher : CRC Press
ISBN 13 : 1466514949
Total Pages : 274 pages
Book Rating : 4.4/5 (665 download)

Book Synopsis Stochastic Dynamics for Systems Biology by : Christian Mazza

Download or read book Stochastic Dynamics for Systems Biology written by Christian Mazza and published by CRC Press. This book was released on 2016-04-19 with total page 274 pages. Available in PDF, EPUB and Kindle. Book excerpt: Stochastic Dynamics for Systems Biology is one of the first books to provide a systematic study of the many stochastic models used in systems biology. The book shows how the mathematical models are used as technical tools for simulating biological processes and how the models lead to conceptual insights on the functioning of the cellular processing

Stochastic Chemical Reaction Systems in Biology

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Author : Hong Qian
Publisher : Springer Nature
ISBN 13 : 3030862526
Total Pages : 364 pages
Book Rating : 4.0/5 (38 download)

Book Synopsis Stochastic Chemical Reaction Systems in Biology by : Hong Qian

Download or read book Stochastic Chemical Reaction Systems in Biology written by Hong Qian and published by Springer Nature. This book was released on 2021-10-18 with total page 364 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides an introduction to the analysis of stochastic dynamic models in biology and medicine. The main aim is to offer a coherent set of probabilistic techniques and mathematical tools which can be used for the simulation and analysis of various biological phenomena. These tools are illustrated on a number of examples. For each example, the biological background is described, and mathematical models are developed following a unified set of principles. These models are then analyzed and, finally, the biological implications of the mathematical results are interpreted. The biological topics covered include gene expression, biochemistry, cellular regulation, and cancer biology. The book will be accessible to graduate students who have a strong background in differential equations, the theory of nonlinear dynamical systems, Markovian stochastic processes, and both discrete and continuous state spaces, and who are familiar with the basic concepts of probability theory.

IUTAM Symposium on Nonlinear Stochastic Dynamics and Control

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Author : W.Q. Zhu
Publisher : Springer Science & Business Media
ISBN 13 : 9400707320
Total Pages : 328 pages
Book Rating : 4.4/5 (7 download)

Book Synopsis IUTAM Symposium on Nonlinear Stochastic Dynamics and Control by : W.Q. Zhu

Download or read book IUTAM Symposium on Nonlinear Stochastic Dynamics and Control written by W.Q. Zhu and published by Springer Science & Business Media. This book was released on 2011-03-07 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: Non-linear stochastic systems are at the center of many engineering disciplines and progress in theoretical research had led to a better understanding of non-linear phenomena. This book provides information on new fundamental results and their applications which are beginning to appear across the entire spectrum of mechanics. The outstanding points of these proceedings are Coherent compendium of the current state of modelling and analysis of non-linear stochastic systems from engineering, applied mathematics and physics point of view. Subject areas include: Multiscale phenomena, stability and bifurcations, control and estimation, computational methods and modelling. For the Engineering and Physics communities, this book will provide first-hand information on recent mathematical developments. The applied mathematics community will benefit from the modelling and information on various possible applications.

Biomolecular Structure and Dynamics

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Author : G. Vergoten
Publisher : Springer Science & Business Media
ISBN 13 : 9401154848
Total Pages : 327 pages
Book Rating : 4.4/5 (11 download)

Book Synopsis Biomolecular Structure and Dynamics by : G. Vergoten

Download or read book Biomolecular Structure and Dynamics written by G. Vergoten and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 327 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biomolecular Structure and Dynamics describes recent fundamental advances in the experimental and theoretical study of molecular dynamics and stochastic dynamic simulations, X-ray crystallography and NMR of biomolecules, the structure of proteins and its prediction, time resolved Fourier transform IR spectroscopy of biomolecules, the computation of free energy, applications of vibrational CD of nucleic acids, and solid state NMR. Further presentations include recent advances in UV resonance Raman spectroscopy of biomolecules, semiempirical MO methods, empirical force fields, quantitative studies of the structure of proteins in water by Fourier transform IR, and density functional theory. Metal-ligand interactions, DFT treatment of organometallic and biological systems, and simulation vs. X-ray and far IR experiments are also discussed in some detail. The book provides a broad perspective of the current theoretical aspects and recent experimental findings in the field of biomolecular dynamics, revealing future research trends, especially in areas where theoreticians and experimentalists could fruitfully collaborate.

Computational Chemistry

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Author : Jerzy Leszczynski
Publisher : World Scientific
ISBN 13 : 9812560971
Total Pages : 260 pages
Book Rating : 4.8/5 (125 download)

Book Synopsis Computational Chemistry by : Jerzy Leszczynski

Download or read book Computational Chemistry written by Jerzy Leszczynski and published by World Scientific. This book was released on 2005 with total page 260 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Vast progress in the area of computational chemistry has been achieved in the last decade. Theoretical methods such as quantum mechanics, molecular dynamics and statistical mechanics have been successfully used to characterize chemical systems and to design new materials, drugs and chemicals. The reviews presented in this volume discuss the current advances in computational methodologies and their applications. The areas covered include materials science, nanotechnology, inorganic and biological systems. The major thrust of the book is to bring timely overviews of new findings and methods applied in the rapidly changing field of computational chemistry."--BOOK JACKET.

Computational Chemistry: Reviews Of Current Trends, Vol. 9

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Author : Jerzy Leszczynski
Publisher : World Scientific
ISBN 13 : 9814481394
Total Pages : 258 pages
Book Rating : 4.8/5 (144 download)

Book Synopsis Computational Chemistry: Reviews Of Current Trends, Vol. 9 by : Jerzy Leszczynski

Download or read book Computational Chemistry: Reviews Of Current Trends, Vol. 9 written by Jerzy Leszczynski and published by World Scientific. This book was released on 2005-05-30 with total page 258 pages. Available in PDF, EPUB and Kindle. Book excerpt: Vast progress in the area of computational chemistry has been achieved in the last decade. Theoretical methods such as quantum mechanics, molecular dynamics and statistical mechanics have been successfully used to characterize chemical systems and to design new materials, drugs and chemicals. The reviews presented in this volume discuss the current advances in computational methodologies and their applications. The areas covered include materials science, nanotechnology, inorganic and biological systems. The major thrust of the book is to bring timely overviews of new findings and methods applied in the rapidly changing field of computational chemistry.

Stochastic Modelling of Reaction–Diffusion Processes

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Author : Radek Erban
Publisher : Cambridge University Press
ISBN 13 : 1108572995
Total Pages : 322 pages
Book Rating : 4.1/5 (85 download)

Book Synopsis Stochastic Modelling of Reaction–Diffusion Processes by : Radek Erban

Download or read book Stochastic Modelling of Reaction–Diffusion Processes written by Radek Erban and published by Cambridge University Press. This book was released on 2020-01-30 with total page 322 pages. Available in PDF, EPUB and Kindle. Book excerpt: This practical introduction to stochastic reaction-diffusion modelling is based on courses taught at the University of Oxford. The authors discuss the essence of mathematical methods which appear (under different names) in a number of interdisciplinary scientific fields bridging mathematics and computations with biology and chemistry. The book can be used both for self-study and as a supporting text for advanced undergraduate or beginning graduate-level courses in applied mathematics. New mathematical approaches are explained using simple examples of biological models, which range in size from simulations of small biomolecules to groups of animals. The book starts with stochastic modelling of chemical reactions, introducing stochastic simulation algorithms and mathematical methods for analysis of stochastic models. Different stochastic spatio-temporal models are then studied, including models of diffusion and stochastic reaction-diffusion modelling. The methods covered include molecular dynamics, Brownian dynamics, velocity jump processes and compartment-based (lattice-based) models.

Statistical Thermodynamics And Stochastic Theory Of Nonequilibrium Systems

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Author : Ebeling Werner
Publisher : World Scientific Publishing Company
ISBN 13 : 9813104635
Total Pages : 344 pages
Book Rating : 4.8/5 (131 download)

Book Synopsis Statistical Thermodynamics And Stochastic Theory Of Nonequilibrium Systems by : Ebeling Werner

Download or read book Statistical Thermodynamics And Stochastic Theory Of Nonequilibrium Systems written by Ebeling Werner and published by World Scientific Publishing Company. This book was released on 2005-09-23 with total page 344 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents both the fundamentals and the major research topics in statistical physics of systems out of equilibrium. It summarizes different approaches to describe such systems on the thermodynamic and stochastic levels, and discusses a variety of areas including reactions, anomalous kinetics, and the behavior of self-propelling particles.

Cellular Oscillatory Mechanisms

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Author : Miguel Maroto
Publisher : Springer Science & Business Media
ISBN 13 : 0387097945
Total Pages : 166 pages
Book Rating : 4.3/5 (87 download)

Book Synopsis Cellular Oscillatory Mechanisms by : Miguel Maroto

Download or read book Cellular Oscillatory Mechanisms written by Miguel Maroto and published by Springer Science & Business Media. This book was released on 2008-12-19 with total page 166 pages. Available in PDF, EPUB and Kindle. Book excerpt: Oscillatory dynamics are a central feature of a wide range of biological processes. This text fully explores cellular oscillations, focusing particularly on elucidating the basic mechanisms that underlie these oscillations.

Biodiversity

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Author : Oscar Grillo
Publisher : BoD – Books on Demand
ISBN 13 : 9535113151
Total Pages : 382 pages
Book Rating : 4.5/5 (351 download)

Book Synopsis Biodiversity by : Oscar Grillo

Download or read book Biodiversity written by Oscar Grillo and published by BoD – Books on Demand. This book was released on 2014-05-14 with total page 382 pages. Available in PDF, EPUB and Kindle. Book excerpt: The current world biodiversity consists of an inestimable amount of living forms, that at all levels, from genes to biomes, from individuals to populations, from species to communities, are in constant pursuit of the best strategies to react to the natural and anthropic environmental changes. The arrangement of new and dynamic ecosystems balanced by the formation and the vanishing of species, is the direct consequence of these changes. This book contains comprehensive overviews and original studies focused on ecological and ecosystem functioning studies, hazards and conservation management, assessment of environmental variables affecting species diversity, also considering species richness and distribution, in order to identify the best management strategies to face and solve the conservation problems.

Terahertz Biomedical Science and Technology

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Author : Joo-Hiuk Son
Publisher : CRC Press
ISBN 13 : 146657044X
Total Pages : 382 pages
Book Rating : 4.4/5 (665 download)

Book Synopsis Terahertz Biomedical Science and Technology by : Joo-Hiuk Son

Download or read book Terahertz Biomedical Science and Technology written by Joo-Hiuk Son and published by CRC Press. This book was released on 2014-06-13 with total page 382 pages. Available in PDF, EPUB and Kindle. Book excerpt: A number of applications including scientific spectroscopy, security screening, and medical imaging have benefitted from the development and utilization of new and emerging terahertz (THz) generation and detection techniques. Exploring recent discoveries and the advancements of biological behaviors through THz spectroscopy and imaging and the development of THz medical techniques, Terahertz Biomedical Science and Technology contains contributions from scientists and researchers in the terahertz biomedical field and is exclusively dedicated to new and emerging terahertz biomedical research and applications. This text offers an assessment of terahertz technology, and provides a compilation of fundamental biological studies conducted using terahertz waves. It introduces THz electromagnetic waves as a new tool for convergent studies, includes laser-based generation techniques and solid-state devices, contains a number of detectors, and discusses high-field generation methods. The material covers recent advancements in terahertz imaging for medical applications—most specifically in cancer diagnosis—reviewing the current status of the THz imaging technique for diagnosing cancers, and exploring the potential medical applications of THz radiation. It also considers the development of future medical applications using terahertz technology. Summarizes the recent progress made in THz waveguides, which are absolutely essential in the development of THz endoscopes Describes the dynamic imaging of drug absorption in skin, exploiting the sensitivity of THz waves to pharmaceutical materials Explores the principle and applications of THz molecular imaging techniques using nanoparticle probes Scientists and engineers involved in biological research and medical applications using optical techniques, as well as graduate students and instructors in optics, physics, electrical engineering, biology, chemistry, and medicine can benefit from this text which highlights new and emerging biomedical studies utilizing novel THz wave techniques.

Statistical Physics of Biomolecules

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Author : Daniel M. Zuckerman
Publisher : CRC Press
ISBN 13 :
Total Pages : 366 pages
Book Rating : 4.F/5 ( download)

Book Synopsis Statistical Physics of Biomolecules by : Daniel M. Zuckerman

Download or read book Statistical Physics of Biomolecules written by Daniel M. Zuckerman and published by CRC Press. This book was released on 2010-06-02 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: It is essential for modern students of molecular behavior to understand the physics at the heart of modern molecular science, but traditional presentations of this material are often difficult to penetrate. This volume brings down to earth some of the most intimidating but important theories of molecular biophysics. Students build understanding by focusing on topics such as probability theory, low-dimensional models, and the simplest molecular systems. The book's accessible development of equilibrium and dynamical statistical physics makes this a valuable text for students with limited physics and chemistry backgrounds.

Frontiers of Quantum Chemistry

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Author : Marek J. Wójcik
Publisher : Springer
ISBN 13 : 981105651X
Total Pages : 512 pages
Book Rating : 4.8/5 (11 download)

Book Synopsis Frontiers of Quantum Chemistry by : Marek J. Wójcik

Download or read book Frontiers of Quantum Chemistry written by Marek J. Wójcik and published by Springer. This book was released on 2017-11-06 with total page 512 pages. Available in PDF, EPUB and Kindle. Book excerpt: The purpose of this book is to convey to the worldwide scientific community the rapid and enthusiastic progress of state-of-the-art quantum chemistry. Quantum chemistry continues to grow with remarkable success particularly due to rapid progress in supercomputers. The usefulness of quantum chemistry is almost limitless. Its application covers not only physical chemistry but also organic and inorganic chemistry, physics, and life sciences. This book deals with all of these topics. Frontiers of Quantum Chemistry is closely related to the symposium of the same name held at Kwansei Gakuin University at Nishinomiya, Japan, in November 2015. The book's contributors, however, include not only invited speakers at the symposium but also many other distinguished scientists from wide areas of quantum chemistry around the world.

Fluctuations and Noise in Biological, Biophysical, and Biomedical Systems

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Author : Sergey M. Bezrukov
Publisher : SPIE-International Society for Optical Engineering
ISBN 13 : 9780819449702
Total Pages : 384 pages
Book Rating : 4.4/5 (497 download)

Book Synopsis Fluctuations and Noise in Biological, Biophysical, and Biomedical Systems by : Sergey M. Bezrukov

Download or read book Fluctuations and Noise in Biological, Biophysical, and Biomedical Systems written by Sergey M. Bezrukov and published by SPIE-International Society for Optical Engineering. This book was released on 2003 with total page 384 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Structure, Dynamics and Function of Biological Macromolecules and Assemblies

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Author : Joseph D. Puglisi
Publisher :
ISBN 13 :
Total Pages : 204 pages
Book Rating : 4.X/5 (4 download)

Book Synopsis Structure, Dynamics and Function of Biological Macromolecules and Assemblies by : Joseph D. Puglisi

Download or read book Structure, Dynamics and Function of Biological Macromolecules and Assemblies written by Joseph D. Puglisi and published by . This book was released on 2005 with total page 204 pages. Available in PDF, EPUB and Kindle. Book excerpt: Proceedings of the International School of Structural Biology and Magnetic Resonance, held at Erice, Italy, in 2003.