Scalable Gaussian Process Inference Using Variational Methods

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (16 download)

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Book Synopsis Scalable Gaussian Process Inference Using Variational Methods by : Alexander Graeme de Garis Matthews

Download or read book Scalable Gaussian Process Inference Using Variational Methods written by Alexander Graeme de Garis Matthews and published by . This book was released on 2017 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Scalable and Automated Inference for Gaussian Process Models

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ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (144 download)

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Book Synopsis Scalable and Automated Inference for Gaussian Process Models by : Trung Van Nguyen

Download or read book Scalable and Automated Inference for Gaussian Process Models written by Trung Van Nguyen and published by . This book was released on 2015 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Gaussian processes (GPs) are widely used in the Bayesian approach to supervised learning. Their ability to provide rich priors over functions is highly desirable for modeling real-world problems. Unfortunately, there exist two big challenges when doing Bayesian inference (i.e., learning the posteriors over functions) for GP models. The first is analytical intractability: The posteriors cannot be computed in closed- form when non-Gaussian likelihoods are employed. The second is scalability: The inference procedures often cannot be applied to large datasets due to their prohibitive computational costs. In this thesis, I develop practical variational inference methods to address the first challenge. Moreover, I introduce three GP models to deal with the second challenge. First, I focus on the analytical intractability challenge starting with the Gaussian process regression networks (GPRN), an expressive multi-output model with adaptive, input-dependent correlations. I derive a variational inference method with two different variational distributions to approximate the true posterior of GPRN. While one distribution is a standard Gaussian, the other is a Gaussian mixture which can capture more complex, multimodal posteriors. Both distributions are shown to be statistically efficient, requiring only a linear number of parameters to represent their inherent covariance matrices. Experimental results demonstrate clear benefits of having a multimodal variational approximation in GPRN. Next, I use the same two variational distributions to address the analytical in- tractability challenge for a large class of GP models. I show that the aforementioned statistical efficiency also stands for members of this class. I further prove that the gradients required for variational learning can either be approximated efficiently or computed analytically, regardless of the likelihood functions of the models. Based on these insights, I develop an automated variational inference method for GP models with general likelihoods. The method allows easy investigation of existing or new models without having to derive model-specific inference algorithms. I then turn to the scalability challenge, focusing on single-output and multi- output regression. The underpinning technique here is sparse GP - a GP augmented with so-called inducing points/variables that lead to lower computational demands. For single-output regression, I introduce a mixture-of-experts model (FGP) where the experts are independent sparse GPs each having their own inducing variables. Their inducing inputs further define a partitioning structure of the input space, allowing an efficient inference scheme in which computation is carried out locally by the experts. FGP can thus be K2 time faster and use K2 less memory than previous GP models, where K is the number of experts. For multi-output regression, I introduce the collaborative multi-output Gaussian process model (COGP) where the outputs are linear combinations of independent sparse GPs. Their inducing points are represented as global variables which correlate the outputs for joint learning. The variables are then exploited to derive a stochastic variational inference method that can deal with a much larger number of inputs and outputs compared to previous models. Superior empirical performance of FGP and COGP is demonstrated through extensive experiments on various real-world datasets.

Handbook of Statistical Genomics

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Publisher : John Wiley & Sons
ISBN 13 : 1119429250
Total Pages : 1828 pages
Book Rating : 4.1/5 (194 download)

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Book Synopsis Handbook of Statistical Genomics by : David J. Balding

Download or read book Handbook of Statistical Genomics written by David J. Balding and published by John Wiley & Sons. This book was released on 2019-07-09 with total page 1828 pages. Available in PDF, EPUB and Kindle. Book excerpt: A timely update of a highly popular handbook on statistical genomics This new, two-volume edition of a classic text provides a thorough introduction to statistical genomics, a vital resource for advanced graduate students, early-career researchers and new entrants to the field. It introduces new and updated information on developments that have occurred since the 3rd edition. Widely regarded as the reference work in the field, it features new chapters focusing on statistical aspects of data generated by new sequencing technologies, including sequence-based functional assays. It expands on previous coverage of the many processes between genotype and phenotype, including gene expression and epigenetics, as well as metabolomics. It also examines population genetics and evolutionary models and inference, with new chapters on the multi-species coalescent, admixture and ancient DNA, as well as genetic association studies including causal analyses and variant interpretation. The Handbook of Statistical Genomics focuses on explaining the main ideas, analysis methods and algorithms, citing key recent and historic literature for further details and references. It also includes a glossary of terms, acronyms and abbreviations, and features extensive cross-referencing between chapters, tying the different areas together. With heavy use of up-to-date examples and references to web-based resources, this continues to be a must-have reference in a vital area of research. Provides much-needed, timely coverage of new developments in this expanding area of study Numerous, brand new chapters, for example covering bacterial genomics, microbiome and metagenomics Detailed coverage of application areas, with chapters on plant breeding, conservation and forensic genetics Extensive coverage of human genetic epidemiology, including ethical aspects Edited by one of the leading experts in the field along with rising stars as his co-editors Chapter authors are world-renowned experts in the field, and newly emerging leaders. The Handbook of Statistical Genomics is an excellent introductory text for advanced graduate students and early-career researchers involved in statistical genetics.

Machine learning using approximate inference

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Publisher : Linköping University Electronic Press
ISBN 13 : 9176851613
Total Pages : 39 pages
Book Rating : 4.1/5 (768 download)

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Book Synopsis Machine learning using approximate inference by : Christian Andersson Naesseth

Download or read book Machine learning using approximate inference written by Christian Andersson Naesseth and published by Linköping University Electronic Press. This book was released on 2018-11-27 with total page 39 pages. Available in PDF, EPUB and Kindle. Book excerpt: Automatic decision making and pattern recognition under uncertainty are difficult tasks that are ubiquitous in our everyday life. The systems we design, and technology we develop, requires us to coherently represent and work with uncertainty in data. Probabilistic models and probabilistic inference gives us a powerful framework for solving this problem. Using this framework, while enticing, results in difficult-to-compute integrals and probabilities when conditioning on the observed data. This means we have a need for approximate inference, methods that solves the problem approximately using a systematic approach. In this thesis we develop new methods for efficient approximate inference in probabilistic models. There are generally two approaches to approximate inference, variational methods and Monte Carlo methods. In Monte Carlo methods we use a large number of random samples to approximate the integral of interest. With variational methods, on the other hand, we turn the integration problem into that of an optimization problem. We develop algorithms of both types and bridge the gap between them. First, we present a self-contained tutorial to the popular sequential Monte Carlo (SMC) class of methods. Next, we propose new algorithms and applications based on SMC for approximate inference in probabilistic graphical models. We derive nested sequential Monte Carlo, a new algorithm particularly well suited for inference in a large class of high-dimensional probabilistic models. Then, inspired by similar ideas we derive interacting particle Markov chain Monte Carlo to make use of parallelization to speed up approximate inference for universal probabilistic programming languages. After that, we show how we can make use of the rejection sampling process when generating gamma distributed random variables to speed up variational inference. Finally, we bridge the gap between SMC and variational methods by developing variational sequential Monte Carlo, a new flexible family of variational approximations.

Scalable Approximate Inference and Model Selection in Gaussian Process Regression

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ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (135 download)

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Book Synopsis Scalable Approximate Inference and Model Selection in Gaussian Process Regression by : David Burt

Download or read book Scalable Approximate Inference and Model Selection in Gaussian Process Regression written by David Burt and published by . This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Scalable Gaussian Process Methods for Single-cell Data

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (119 download)

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Book Synopsis Scalable Gaussian Process Methods for Single-cell Data by : Sumon Ahmed

Download or read book Scalable Gaussian Process Methods for Single-cell Data written by Sumon Ahmed and published by . This book was released on 2020 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

A Scalable and Flexible Framework for Gaussian Processes Via Matrix-vector Multiplication

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Publisher :
ISBN 13 :
Total Pages : 213 pages
Book Rating : 4.:/5 (124 download)

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Book Synopsis A Scalable and Flexible Framework for Gaussian Processes Via Matrix-vector Multiplication by : Geoff Pleiss

Download or read book A Scalable and Flexible Framework for Gaussian Processes Via Matrix-vector Multiplication written by Geoff Pleiss and published by . This book was released on 2020 with total page 213 pages. Available in PDF, EPUB and Kindle. Book excerpt: Gaussian processes (GPs) exhibit a classic tension of many machine learning methods: they possess desirable modelling capabilities yet suffer from important practical limitations. In many instances, GPs are able to offer well-calibrated uncertainty estimates, interpretable predictions, and the ability to encode prior knowledge. These properties have made them an indispensable tool for black-box optimization, time series forecasting, and high-risk applications like health care. Despite these benefits, GPs are typically not applied to datasets with more than a few thousand data points. This is in part due to an inference procedure that requires matrix inverses, determinants, and other expensive operations. Moreover, specialty models often require significant implementation efforts. This thesis aims to alleviate these practical concerns through a single simple design decision. Taking inspiration from neural network libraries, we construct GP inference algorithms using only matrix-vector multiplications (MVMs) and other linear operations. This MVM-based approach simultaneously address several of these practical concerns: it reduces asymptotic complexity, effectively utilizes GPU hardware, and provides straight-forward implementations for many specialty GP models. The chapters of this thesis each address a different aspect of Gaussian process inference. Chapter 3 introduces a MVM method for training Gaussian process regression models (i.e. optimizing kernel/likelihood hyperparameters). This approach unifies several existing methods into a highly-parallel and stable algorithm. Chapter 4 focuses on making predictions with Gaussian processes. A memory-efficient cache, which can be computed through MVMs, significantly reduces the computation of predictive distributions. Chapter 5 introduces a multi-purpose MVM algorithm that can be used to draw samples from GP posteriors and perform approximate Gaussian process inference. All three of these methods offer speedups ranging from 4x to 40x. Importantly, applying any of these algorithms to specialty models (e.g. multitask GPs and scalable approximations) simply requires a matrix-vector multiplication routine that exploits covariance structure afforded by the model. The MVM methods from this thesis form the building blocks of the GPyTorch library, an open-sourced GP implementation designed for scalability and simple implementations. In the final chapter, we evaluate GPyTorch models on several large-scale regression datasets. Using the proposed MVM methods, we can apply exact Gaussian processes to datasets that are 2 orders of magnitude larger than what has previously been reported - up to 1 million data points.

Gaussian Processes for Machine Learning

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Publisher : MIT Press
ISBN 13 : 026218253X
Total Pages : 266 pages
Book Rating : 4.2/5 (621 download)

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Book Synopsis Gaussian Processes for Machine Learning by : Carl Edward Rasmussen

Download or read book Gaussian Processes for Machine Learning written by Carl Edward Rasmussen and published by MIT Press. This book was released on 2005-11-23 with total page 266 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive and self-contained introduction to Gaussian processes, which provide a principled, practical, probabilistic approach to learning in kernel machines. Gaussian processes (GPs) provide a principled, practical, probabilistic approach to learning in kernel machines. GPs have received increased attention in the machine-learning community over the past decade, and this book provides a long-needed systematic and unified treatment of theoretical and practical aspects of GPs in machine learning. The treatment is comprehensive and self-contained, targeted at researchers and students in machine learning and applied statistics. The book deals with the supervised-learning problem for both regression and classification, and includes detailed algorithms. A wide variety of covariance (kernel) functions are presented and their properties discussed. Model selection is discussed both from a Bayesian and a classical perspective. Many connections to other well-known techniques from machine learning and statistics are discussed, including support-vector machines, neural networks, splines, regularization networks, relevance vector machines and others. Theoretical issues including learning curves and the PAC-Bayesian framework are treated, and several approximation methods for learning with large datasets are discussed. The book contains illustrative examples and exercises, and code and datasets are available on the Web. Appendixes provide mathematical background and a discussion of Gaussian Markov processes.

Scalable Inference for Structured Gaussian Process Models

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (89 download)

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Book Synopsis Scalable Inference for Structured Gaussian Process Models by : Yunus Saatçi

Download or read book Scalable Inference for Structured Gaussian Process Models written by Yunus Saatçi and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Kernel Mean Embedding of Distributions

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Publisher :
ISBN 13 : 9781680832884
Total Pages : 154 pages
Book Rating : 4.8/5 (328 download)

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Book Synopsis Kernel Mean Embedding of Distributions by : Krikamol Muandet

Download or read book Kernel Mean Embedding of Distributions written by Krikamol Muandet and published by . This book was released on 2017-06-28 with total page 154 pages. Available in PDF, EPUB and Kindle. Book excerpt: Provides a comprehensive review of kernel mean embeddings of distributions and, in the course of doing so, discusses some challenging issues that could potentially lead to new research directions. The targeted audience includes graduate students and researchers in machine learning and statistics.

Scalable Inference in Latent Gaussian Process Models

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (115 download)

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Book Synopsis Scalable Inference in Latent Gaussian Process Models by : Florian Wenzel

Download or read book Scalable Inference in Latent Gaussian Process Models written by Florian Wenzel and published by . This book was released on 2020 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Variational Inference for Composite Gaussian Process Models

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ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (139 download)

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Book Synopsis Variational Inference for Composite Gaussian Process Models by : Jakob Lindinger

Download or read book Variational Inference for Composite Gaussian Process Models written by Jakob Lindinger and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Quantitative Evaluation of Systems

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Publisher : Springer Nature
ISBN 13 : 3030851729
Total Pages : 469 pages
Book Rating : 4.0/5 (38 download)

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Book Synopsis Quantitative Evaluation of Systems by : Alessandro Abate

Download or read book Quantitative Evaluation of Systems written by Alessandro Abate and published by Springer Nature. This book was released on 2021-08-19 with total page 469 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the proceedings of the 18th International Conference on Quantitative Evaluation Systems, QEST 2021, held in Paris, France, in August 2021. The 21 full papers and 2 short papers presented together with 2 keynote papers were carefully reviewed and selected from 47 submissions. The papers are organized in the following topics: probabilistic model checking; quantitative models and metamodels: analysis and validation; queueing systems; learning and verification; simulation; performance evaluation; abstractions and aggregations; and stochastic models.

Data Analytics for Renewable Energy Integration: Informing the Generation and Distribution of Renewable Energy

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Publisher : Springer
ISBN 13 : 3319716433
Total Pages : 142 pages
Book Rating : 4.3/5 (197 download)

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Book Synopsis Data Analytics for Renewable Energy Integration: Informing the Generation and Distribution of Renewable Energy by : Wei Lee Woon

Download or read book Data Analytics for Renewable Energy Integration: Informing the Generation and Distribution of Renewable Energy written by Wei Lee Woon and published by Springer. This book was released on 2017-11-24 with total page 142 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes revised selected papers from the 5th ECML PKDD Workshop on Data Analytics for Renewable Energy Integration, DARE 2017, held in Skopje, Macedonia, in September 2017. The 11 papers presented in this volume were carefully reviewed and selected for inclusion in this book and handle topics such as time series forecasting, the detection of faults, cyber security, smart grid and smart cities, technology integration, demand response and many others.

Efficient Reinforcement Learning Using Gaussian Processes

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Publisher : KIT Scientific Publishing
ISBN 13 : 3866445695
Total Pages : 226 pages
Book Rating : 4.8/5 (664 download)

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Book Synopsis Efficient Reinforcement Learning Using Gaussian Processes by : Marc Peter Deisenroth

Download or read book Efficient Reinforcement Learning Using Gaussian Processes written by Marc Peter Deisenroth and published by KIT Scientific Publishing. This book was released on 2010 with total page 226 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book examines Gaussian processes in both model-based reinforcement learning (RL) and inference in nonlinear dynamic systems.First, we introduce PILCO, a fully Bayesian approach for efficient RL in continuous-valued state and action spaces when no expert knowledge is available. PILCO takes model uncertainties consistently into account during long-term planning to reduce model bias. Second, we propose principled algorithms for robust filtering and smoothing in GP dynamic systems.

Extreme Multi-label Learning with Gaussian Processes

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Publisher :
ISBN 13 :
Total Pages : 187 pages
Book Rating : 4.:/5 (116 download)

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Book Synopsis Extreme Multi-label Learning with Gaussian Processes by : Aristeidis Panos

Download or read book Extreme Multi-label Learning with Gaussian Processes written by Aristeidis Panos and published by . This book was released on 2019 with total page 187 pages. Available in PDF, EPUB and Kindle. Book excerpt: In modern probabilistic machine learning, Gaussian process models have provided both powerful and principled ways to approach a series of challenging problems. Nonetheless, their applicability can be significantly limited by cases where the number of training data points is large, something very typical in many modern machine learning applications. An additional restriction can be imposed when the posterior distribution is intractable due to non-Gaussian likelihoods used. Despite the fact that these two limitations have been efficiently addressed over the last decade, applications of Gaussian process models under extreme regimes where the number of the training data points and the dimensionality of both input and output space is extremely large have not appeared in literature so far. This thesis is focused on this kind of applications of Gaussian processes where supervised tasks such as multi-class and multi-label classification are considered. We start by discussing the main mathematical tools required in order to successfully cope with the large scale of the datasets. Those include a variational inference framework, suitably tailored for Gaussian processes. Furthermore, in our attempt to alleviate the computational burden, we introduce a new parametrization for the variational distribution while a representation trick for reducing storage requirements for large input dimensions is also discussed. A methodology is then presented which is based on this variational inference framework and a computationally efficient bound on the softmax function that allows the use of Gaussian processes for multi-class classification problems that involve arbitrarily large number of classes. A series of experiments test and compare the performance of this methodology with other methods. Finally, we move to the more general multi-label classification task and we develop a method, also relied on the same variational inference framework, which can deal with datasets involving hundreds of thousands data points, input dimensions and labels. The effectiveness of our method is supported by experiments on several real-world multi-label datasets.

A Robust-scalable Gaussian Process Regression Approach with Applications in Float Glass Manufacture

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Publisher :
ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (137 download)

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Book Synopsis A Robust-scalable Gaussian Process Regression Approach with Applications in Float Glass Manufacture by : Diego Echeverria Rios

Download or read book A Robust-scalable Gaussian Process Regression Approach with Applications in Float Glass Manufacture written by Diego Echeverria Rios and published by . This book was released on 2022 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: