Quantitative Methods In Biology

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Quantitative Biology

Author : Brian Munsky
Publisher : MIT Press
ISBN 13 : 0262038080
Total Pages : 729 pages
Book Rating : 4.2/5 (62 download)

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Book Synopsis Quantitative Biology by : Brian Munsky

Download or read book Quantitative Biology written by Brian Munsky and published by MIT Press. This book was released on 2018-08-21 with total page 729 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to the quantitative modeling of biological processes, presenting modeling approaches, methodology, practical algorithms, software tools, and examples of current research. The quantitative modeling of biological processes promises to expand biological research from a science of observation and discovery to one of rigorous prediction and quantitative analysis. The rapidly growing field of quantitative biology seeks to use biology's emerging technological and computational capabilities to model biological processes. This textbook offers an introduction to the theory, methods, and tools of quantitative biology. The book first introduces the foundations of biological modeling, focusing on some of the most widely used formalisms. It then presents essential methodology for model-guided analyses of biological data, covering such methods as network reconstruction, uncertainty quantification, and experimental design; practical algorithms and software packages for modeling biological systems; and specific examples of current quantitative biology research and related specialized methods. Most chapters offer problems, progressing from simple to complex, that test the reader's mastery of such key techniques as deterministic and stochastic simulations and data analysis. Many chapters include snippets of code that can be used to recreate analyses and generate figures related to the text. Examples are presented in the three popular computing languages: Matlab, R, and Python. A variety of online resources supplement the the text. The editors are long-time organizers of the Annual q-bio Summer School, which was founded in 2007. Through the school, the editors have helped to train more than 400 visiting students in Los Alamos, NM, Santa Fe, NM, San Diego, CA, Albuquerque, NM, and Fort Collins, CO. This book is inspired by the school's curricula, and most of the contributors have participated in the school as students, lecturers, or both. Contributors John H. Abel, Roberto Bertolusso, Daniela Besozzi, Michael L. Blinov, Clive G. Bowsher, Fiona A. Chandra, Paolo Cazzaniga, Bryan C. Daniels, Bernie J. Daigle, Jr., Maciej Dobrzynski, Jonathan P. Doye, Brian Drawert, Sean Fancer, Gareth W. Fearnley, Dirk Fey, Zachary Fox, Ramon Grima, Andreas Hellander, Stefan Hellander, David Hofmann, Damian Hernandez, William S. Hlavacek, Jianjun Huang, Tomasz Jetka, Dongya Jia, Mohit Kumar Jolly, Boris N. Kholodenko, Markek Kimmel, Michał Komorowski, Ganhui Lan, Heeseob Lee, Herbert Levine, Leslie M Loew, Jason G. Lomnitz, Ard A. Louis, Grant Lythe, Carmen Molina-París, Ion I. Moraru, Andrew Mugler, Brian Munsky, Joe Natale, Ilya Nemenman, Karol Nienałtowski, Marco S. Nobile, Maria Nowicka, Sarah Olson, Alan S. Perelson, Linda R. Petzold, Sreenivasan Ponnambalam, Arya Pourzanjani, Ruy M. Ribeiro, William Raymond, William Raymond, Herbert M. Sauro, Michael A. Savageau, Abhyudai Singh, James C. Schaff, Boris M. Slepchenko, Thomas R. Sokolowski, Petr Šulc, Andrea Tangherloni, Pieter Rein ten Wolde, Philipp Thomas, Karen Tkach Tuzman, Lev S. Tsimring, Dan Vasilescu, Margaritis Voliotis, Lisa Weber

Quantitative Methods in Biological and Medical Sciences

Author : H.O. Lancaster
Publisher : Springer Science & Business Media
ISBN 13 : 1461226589
Total Pages : 310 pages
Book Rating : 4.4/5 (612 download)

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Book Synopsis Quantitative Methods in Biological and Medical Sciences by : H.O. Lancaster

Download or read book Quantitative Methods in Biological and Medical Sciences written by H.O. Lancaster and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt: My original intention was to write a history of medical statistics, used in its prewar sense, expanding the writings on the subject by Major Greenwood, from which I formed many of my ideas in the early days immediately after the Second World War. In later years, I decided that the scope of his works was narrower than what I think is appropriate now, for he was writing in an era before the acceptance and use of the Fisherian methods and he was probably not aware of the mathematization of many parts of biological theory. Further, the boundary between the medical and biological sciences has largely disappeared. Many texts have now been written on branches of the theory and practice inspired by R. A. Fisher (see §4. 13). I discuss the history of the use of quantitative methods in the biological sciences, defined after the style of Peller (1967) as that branch of science that uses a quantitative approach to, or quantitative logical reasoning on, or biology. The mathematical tech any issue having to do with medicine niques are various and not classified here. Within the book I use "biological sciences" to include medicine but use the longer phrase in its title to avoid misunderstandings as to content. Moreover, most of the experimental work carried out in medical research laboratories is performed on animals other than man.

The Quantitative method in biology

Author : Jules MacLeod
Publisher :
ISBN 13 :
Total Pages : 286 pages
Book Rating : 4.F/5 ( download)

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Book Synopsis The Quantitative method in biology by : Jules MacLeod

Download or read book The Quantitative method in biology written by Jules MacLeod and published by . This book was released on 1919 with total page 286 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Quantitative Methods for Conservation Biology

Author : Scott Ferson
Publisher : Springer Science & Business Media
ISBN 13 : 0387954864
Total Pages : 334 pages
Book Rating : 4.3/5 (879 download)

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Book Synopsis Quantitative Methods for Conservation Biology by : Scott Ferson

Download or read book Quantitative Methods for Conservation Biology written by Scott Ferson and published by Springer Science & Business Media. This book was released on 2002-06-13 with total page 334 pages. Available in PDF, EPUB and Kindle. Book excerpt: Reviews the quantitative tools used in the study of subjects such as biodiversity, resource management and endangered species preservation. Topics covered include population viability analysis, population dynamics, metapopulation models, estimating timing of extinctions, quasi-extinction and more.

Quantitative Biology

Author : Michael E. Wall
Publisher : CRC Press
ISBN 13 : 1439827222
Total Pages : 406 pages
Book Rating : 4.4/5 (398 download)

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Book Synopsis Quantitative Biology by : Michael E. Wall

Download or read book Quantitative Biology written by Michael E. Wall and published by CRC Press. This book was released on 2012-08-25 with total page 406 pages. Available in PDF, EPUB and Kindle. Book excerpt: Quantitative methods are revolutionizing modern molecular and cellular biology. Groundbreaking technical advances are fueling the rapid expansion in our ability to observe, as seen in multidisciplinary studies that integrate theory, computation, experimental assays, and the control of microenvironments. Integrating new experimental and theoretical methods, Quantitative Biology: From Molecular to Cellular Systems gives both new and established researchers a solid foundation for starting work in this field. The book is organized into three sections: Fundamental Concepts covers bold ideas that inspire novel approaches in modern quantitative biology. It offers perspectives on evolutionary dynamics, system design principles, chance and memory, and information processing in biology. Methods describes recently developed or improved techniques that are transforming biological research. It covers experimental methods for studying single-molecule biochemistry, small-angle scattering from biomolecules, subcellular localization of proteins, and single-cell behavior. It also describes theoretical methods for synthetic biology and modeling random variations among cells. Molecular and Cellular Systems focuses on specific biological systems where modern quantitative biology methods are making an impact. It incorporates case studies of biological systems for which new concepts or methods are increasing our understanding. Examples include protein kinase at the molecular level, the genetic switch of phage lambda at the regulatory system level, and Escherichia coli chemotaxis at the cellular level. In short, Quantitative Biology presents practical tools for the observation, modeling, design, and manipulation of biological systems from the molecular to the cellular levels.

The Theoretical Biologist's Toolbox

Author : Marc Mangel
Publisher : Cambridge University Press
ISBN 13 : 1139455869
Total Pages : 323 pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis The Theoretical Biologist's Toolbox by : Marc Mangel

Download or read book The Theoretical Biologist's Toolbox written by Marc Mangel and published by Cambridge University Press. This book was released on 2006-07-27 with total page 323 pages. Available in PDF, EPUB and Kindle. Book excerpt: Mathematical modelling is widely used in ecology and evolutionary biology and it is a topic that many biologists find difficult to grasp. In this new textbook Marc Mangel provides a no-nonsense introduction to the skills needed to understand the principles of theoretical and mathematical biology. Fundamental theories and applications are introduced using numerous examples from current biological research, complete with illustrations to highlight key points. Exercises are also included throughout the text to show how theory can be applied and to test knowledge gained so far. Suitable for advanced undergraduate courses in theoretical and mathematical biology, this book forms an essential resource for anyone wanting to gain an understanding of theoretical ecology and evolution.

Quantitative Methods in Biology

Author : M. A. Williams
Publisher :
ISBN 13 :
Total Pages : 234 pages
Book Rating : 4.:/5 (251 download)

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Book Synopsis Quantitative Methods in Biology by : M. A. Williams

Download or read book Quantitative Methods in Biology written by M. A. Williams and published by . This book was released on 1977 with total page 234 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Quantitative Social Science

Author : Kosuke Imai
Publisher : Princeton University Press
ISBN 13 : 0691191093
Total Pages : 464 pages
Book Rating : 4.6/5 (911 download)

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Book Synopsis Quantitative Social Science by : Kosuke Imai

Download or read book Quantitative Social Science written by Kosuke Imai and published by Princeton University Press. This book was released on 2021-03-16 with total page 464 pages. Available in PDF, EPUB and Kindle. Book excerpt: "Princeton University Press published Imai's textbook, Quantitative Social Science: An Introduction, an introduction to quantitative methods and data science for upper level undergrads and graduates in professional programs, in February 2017. What is distinct about the book is how it leads students through a series of applied examples of statistical methods, drawing on real examples from social science research. The original book was prepared with the statistical software R, which is freely available online and has gained in popularity in recent years. But many existing courses in statistics and data sciences, particularly in some subject areas like sociology and law, use STATA, another general purpose package that has been the market leader since the 1980s. We've had several requests for STATA versions of the text as many programs use it by default. This is a "translation" of the original text, keeping all the current pedagogical text but inserting the necessary code and outputs from STATA in their place"--

Quantitative Imaging in Cell Biology

Author :
Publisher : Academic Press
ISBN 13 : 0124202012
Total Pages : 609 pages
Book Rating : 4.1/5 (242 download)

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Book Synopsis Quantitative Imaging in Cell Biology by :

Download or read book Quantitative Imaging in Cell Biology written by and published by Academic Press. This book was released on 2014-06-25 with total page 609 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new volume, number 123, of Methods in Cell Biology looks at methods for quantitative imaging in cell biology. It covers both theoretical and practical aspects of using optical fluorescence microscopy and image analysis techniques for quantitative applications. The introductory chapters cover fundamental concepts and techniques important for obtaining accurate and precise quantitative data from imaging systems. These chapters address how choice of microscope, fluorophores, and digital detector impact the quality of quantitative data, and include step-by-step protocols for capturing and analyzing quantitative images. Common quantitative applications, including co-localization, ratiometric imaging, and counting molecules, are covered in detail. Practical chapters cover topics critical to getting the most out of your imaging system, from microscope maintenance to creating standardized samples for measuring resolution. Later chapters cover recent advances in quantitative imaging techniques, including super-resolution and light sheet microscopy. With cutting-edge material, this comprehensive collection is intended to guide researchers for years to come. Covers sections on model systems and functional studies, imaging-based approaches and emerging studies Chapters are written by experts in the field Cutting-edge material

Handbook of Quantitative Ecology

Author : Justin Kitzes
Publisher : University of Chicago Press
ISBN 13 : 0226818330
Total Pages : 174 pages
Book Rating : 4.2/5 (268 download)

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Book Synopsis Handbook of Quantitative Ecology by : Justin Kitzes

Download or read book Handbook of Quantitative Ecology written by Justin Kitzes and published by University of Chicago Press. This book was released on 2022-08-16 with total page 174 pages. Available in PDF, EPUB and Kindle. Book excerpt: An essential guide to quantitative research methods in ecology and conservation biology, accessible for even the most math-averse student or professional. Quantitative research techniques have become increasingly important in ecology and conservation biology, but the sheer breadth of methods that must be understood—from population modeling and probabilistic thinking to modern statistics, simulation, and data science—and a lack of computational or mathematics training have hindered quantitative literacy in these fields. In this book, ecologist Justin Kitzes addresses those challenges for students and practicing scientists alike. Requiring only basic algebra and the ability to use a spreadsheet, Handbook of Quantitative Ecology is designed to provide a practical, intuitive, and integrated introduction to widely used quantitative methods. Kitzes builds each chapter around a specific ecological problem and arrives, step by step, at a general principle through the process of solving that problem. Grouped into five broad categories—difference equations, probability, matrix models, likelihood statistics, and other numerical methods—the book introduces basic concepts, starting with exponential and logistic growth, and helps readers to understand the field’s more advanced subjects, such as bootstrapping, stochastic optimization, and cellular automata. Complete with online solutions to all numerical problems, Kitzes’s Handbook of Quantitative Ecology is an ideal coursebook for both undergraduate and graduate students of ecology, as well as a useful and necessary resource for mathematically out-of-practice scientists.

Quantitative Methods in The Study of Animal behavior

Author : Brian Hazlett
Publisher : Elsevier
ISBN 13 : 0323159648
Total Pages : 233 pages
Book Rating : 4.3/5 (231 download)

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Book Synopsis Quantitative Methods in The Study of Animal behavior by : Brian Hazlett

Download or read book Quantitative Methods in The Study of Animal behavior written by Brian Hazlett and published by Elsevier. This book was released on 2012-12-02 with total page 233 pages. Available in PDF, EPUB and Kindle. Book excerpt: Quantitative Methods in the Study of Animal Behavior covers a symposium on quantitative methods in behavior. In this book, mathematics is used in two ways – statistical approaches (techniques that describe the main patterns and variability of behavior patterns) and model building. Composed of six chapters, the book opens with a discussion on the three areas of classical ethology – social dominance, behavioral taxonomy, and behavioral variability. The following chapter focuses on the information theory as an ethological tool. In Chapter 3, application of multivariate analyses to diverse ethological data is discussed. The next part of the book discusses more in detail the animal behavioral patterns, relationships, and sequences. The book is a good reference for various fields such as biological science, marine science, and zoology. Students, teachers, scientists, and researchers interested in the aspects of statistics and patterns in animal behavior can make use of this book as a valuable resource.

A Text-Book of Biology for Students in General, Medical and Technical Courses

Author : William Martin Smallwood
Publisher : Legare Street Press
ISBN 13 : 9781015994317
Total Pages : 0 pages
Book Rating : 4.9/5 (943 download)

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Book Synopsis A Text-Book of Biology for Students in General, Medical and Technical Courses by : William Martin Smallwood

Download or read book A Text-Book of Biology for Students in General, Medical and Technical Courses written by William Martin Smallwood and published by Legare Street Press. This book was released on 2022-10-27 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This work has been selected by scholars as being culturally important, and is part of the knowledge base of civilization as we know it. This work is in the "public domain in the United States of America, and possibly other nations. Within the United States, you may freely copy and distribute this work, as no entity (individual or corporate) has a copyright on the body of the work. Scholars believe, and we concur, that this work is important enough to be preserved, reproduced, and made generally available to the public. We appreciate your support of the preservation process, and thank you for being an important part of keeping this knowledge alive and relevant.

The Quantitative method in biology

Author : Jules MacLeod
Publisher :
ISBN 13 :
Total Pages : 286 pages
Book Rating : 4.F/5 ( download)

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Book Synopsis The Quantitative method in biology by : Jules MacLeod

Quantitative Methods for Conservation Biology

Author : Scott Ferson
Publisher : Springer Science & Business Media
ISBN 13 : 0387226486
Total Pages : 334 pages
Book Rating : 4.3/5 (872 download)

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Book Synopsis Quantitative Methods for Conservation Biology by : Scott Ferson

Download or read book Quantitative Methods for Conservation Biology written by Scott Ferson and published by Springer Science & Business Media. This book was released on 2006-05-09 with total page 334 pages. Available in PDF, EPUB and Kindle. Book excerpt: Quantitative methods are needed in conservation biology more than ever as an increasing number of threatened species find their way onto international and national “red lists. ” Objective evaluation of population decline and extinction probability are required for sound decision making. Yet, as our colleague Selina Heppell points out, population viability analysis and other forms of formal risk assessment are underused in policy formation because of data uncertainty and a lack of standardized methodologies and unambiguous criteria (i. e. , “rules of thumb”). Models used in conservation biology range from those that are purely heuristic to some that are highly predictive. Model selection should be dependent on the questions being asked and the data that are available. We need to develop a toolbox of quantitative methods that can help scientists and managers with a wide range of systems and that are subject to varying levels of data uncertainty and environmental variability. The methods outlined in the following chapters represent many of the tools needed to fill that toolbox. When used in conjunction with adaptive management, they should provide information for improved monitoring, risk assessment, and evaluation of management alternatives. The first two chapters describe the application of methods for detecting trends and extinctions from sighting data. Presence/absence data are used in general linear and additive models in Chapters 3 and 4 to predict the extinction proneness of birds and to build habitat models for plants.

Biology by Numbers

Author : Richard F. Burton
Publisher : Cambridge University Press
ISBN 13 : 9780521576987
Total Pages : 260 pages
Book Rating : 4.5/5 (769 download)

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Book Synopsis Biology by Numbers by : Richard F. Burton

Download or read book Biology by Numbers written by Richard F. Burton and published by Cambridge University Press. This book was released on 1998-02-26 with total page 260 pages. Available in PDF, EPUB and Kindle. Book excerpt: A practical undergraduate textbook for maths-shy biology students showing how basic maths reveals important insights.

The SAGE Handbook of Quantitative Methodology for the Social Sciences

Author : David Kaplan
Publisher : SAGE
ISBN 13 : 9780761923596
Total Pages : 532 pages
Book Rating : 4.9/5 (235 download)

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Book Synopsis The SAGE Handbook of Quantitative Methodology for the Social Sciences by : David Kaplan

Download or read book The SAGE Handbook of Quantitative Methodology for the Social Sciences written by David Kaplan and published by SAGE. This book was released on 2004-06-21 with total page 532 pages. Available in PDF, EPUB and Kindle. Book excerpt: Quantitative methodology is a highly specialized field, and as with any highly specialized field, working through idiosyncratic language can be very difficult made even more so when concepts are conveyed in the language of mathematics and statistics. The Sage Handbook of Quantitative Methodology for the Social Sciences was conceived as a way of introducing applied statisticians, empirical researchers, and graduate students to the broad array of state-of-the-art quantitative methodologies in the social sciences. The contributing authors of the Handbook were asked to write about their areas of expertise in a way that would convey to the reader the utility of their respective methodologies. Relevance to real-world problems in the social sciences is an essential ingredient of each chapter. The Handbook consists of six sections comprising twenty-five chapters, from topics in scaling and measurement, to advances in statistical modelling methodologies, and finally to broad philosophical themes that transcend many of the quantitative methodologies covered in this handbook.

Computational Network Analysis with R

Author : Matthias Dehmer
Publisher : John Wiley & Sons
ISBN 13 : 3527339582
Total Pages : 364 pages
Book Rating : 4.5/5 (273 download)

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Book Synopsis Computational Network Analysis with R by : Matthias Dehmer

Download or read book Computational Network Analysis with R written by Matthias Dehmer and published by John Wiley & Sons. This book was released on 2016-12-12 with total page 364 pages. Available in PDF, EPUB and Kindle. Book excerpt: This new title in the well-established "Quantitative Network Biology" series includes innovative and existing methods for analyzing network data in such areas as network biology and chemoinformatics. With its easy-to-follow introduction to the theoretical background and application-oriented chapters, the book demonstrates that R is a powerful language for statistically analyzing networks and for solving such large-scale phenomena as network sampling and bootstrapping. Written by editors and authors with an excellent track record in the field, this is the ultimate reference for R in Network Analysis.