Quantitative Biology Of Endocytosis

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Quantitative Biology of Endocytosis

Author : Julien Berro
Publisher : Biota Publishing
ISBN 13 : 1615047859
Total Pages : 88 pages
Book Rating : 4.6/5 (15 download)

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Book Synopsis Quantitative Biology of Endocytosis by : Julien Berro

Download or read book Quantitative Biology of Endocytosis written by Julien Berro and published by Biota Publishing. This book was released on 2018-07-25 with total page 88 pages. Available in PDF, EPUB and Kindle. Book excerpt: Clathrin-mediated endocytosis (CME) is a ubiquitous internalization process in eukaryotic cells. It consists of the formation of an approximately 50-nm diameter vesicle out of a flat membrane. Genetics, biochemistry, and microscopy experiments performed in the last four decades have been instrumental to discover and characterize major endocytic proteins in yeast and mammals. However, due to the highly dynamic nature of the endocytic assembly and its small size, many questions remain unresolved: how are endocytic proteins organized spatially and dynamically? How are forces produced and how are their directions controlled? How do the biochemical activities of endocytic proteins and the membrane shape and mechanics regulate each other? These questions are virtually impossible to visualize or measure directly with conventional approaches but thanks to new quantitative biology methods, it is now possible to infer the mechanisms of endocytosis in exquisite detail. This book introduces quantitative microscopy and mathematical modeling approaches that have been used to count the copy number of endocytic proteins, infer their localization with nanometer precision, and infer molecular and physical mechanisms that are involved in the robust formation of endocytic vesicles.

Exocytosis and Endocytosis

Author : Andrei I. Ivanov
Publisher : Springer Science & Business Media
ISBN 13 : 1588298655
Total Pages : 407 pages
Book Rating : 4.5/5 (882 download)

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Book Synopsis Exocytosis and Endocytosis by : Andrei I. Ivanov

Download or read book Exocytosis and Endocytosis written by Andrei I. Ivanov and published by Springer Science & Business Media. This book was released on 2008 with total page 407 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this book, skilled experts provide the most up-to-date, step-by-step laboratory protocols for examining molecular machinery and biological functions of exocytosis and endocytosis in vitro and in vivo. The book is insightful to both newcomers and seasoned professionals. It offers a unique and highly practical guide to versatile laboratory tools developed to study various aspects of intracellular vesicle trafficking in simple model systems and living organisms.

Molecular Biology of The Cell

Author : Bruce Alberts
Publisher :
ISBN 13 : 9780815332183
Total Pages : 0 pages
Book Rating : 4.3/5 (321 download)

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Book Synopsis Molecular Biology of The Cell by : Bruce Alberts

Download or read book Molecular Biology of The Cell written by Bruce Alberts and published by . This book was released on 2002 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Molecular Biology of Signal Transduction

Author :
Publisher : Cold Spring Harbor Laboratory Press
ISBN 13 :
Total Pages : 1049 pages
Book Rating : 4.:/5 (196 download)

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Book Synopsis Molecular Biology of Signal Transduction by :

Download or read book Molecular Biology of Signal Transduction written by and published by Cold Spring Harbor Laboratory Press. This book was released on 1988 with total page 1049 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Endocytosis in Plants

Author : Jozef Šamaj
Publisher : Springer Science & Business Media
ISBN 13 : 3642324622
Total Pages : 337 pages
Book Rating : 4.6/5 (423 download)

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Book Synopsis Endocytosis in Plants by : Jozef Šamaj

Download or read book Endocytosis in Plants written by Jozef Šamaj and published by Springer Science & Business Media. This book was released on 2012-10-02 with total page 337 pages. Available in PDF, EPUB and Kindle. Book excerpt: Endocytosis is a fundamental cellular process by means of which cells internalize extracellular and plasma membrane cargos for recycling or degradation. It is important for the establishment and maintenance of cell polarity, subcellular signaling and uptake of nutrients into specialized cells, but also for plant cell interactions with pathogenic and symbiotic microbes. Endocytosis starts by vesicle formation at the plasma membrane and progresses through early and late endosomal compartments. In these endosomes cargo is sorted and it is either recycled back to the plasma membrane, or degraded in the lytic vacuole. This book presents an overview of our current knowledge of endocytosis in plants with a main focus on the key molecules undergoing and regulating endocytosis. It also provides up to date methodological approaches as well as principles of protein, structural lipid, sugar and microbe internalization in plant cells. The individual chapters describe clathrin-mediated and fluid-phase endocytosis, as well as flotillin-mediated endocytosis and internalization of microbes. The book was written for a broad spectrum of readers including students, teachers and researchers.

Introduction to Quantitative Cell Biology

Author : Wallace F. Marshall
Publisher : Biota Publishing
ISBN 13 : 1615046690
Total Pages : 60 pages
Book Rating : 4.6/5 (15 download)

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Book Synopsis Introduction to Quantitative Cell Biology by : Wallace F. Marshall

Download or read book Introduction to Quantitative Cell Biology written by Wallace F. Marshall and published by Biota Publishing. This book was released on 2017-07-20 with total page 60 pages. Available in PDF, EPUB and Kindle. Book excerpt: For the past decade or more, much of cell biology research has been focused on determining the key molecules involved in different cellular processes, an analytical problem that has been amenable to biochemical and genetic approaches. Now, we face an integrative problem of understanding how all of these molecules work together to produce living cells, a challenge that requires using quantitative approaches to model the complex interactions within a cell, and testing those models with careful quantitative measurements. This book is an introductory overview of the various approaches, methods, techniques, and models employed in quantitative cell biology, which are reviewed in greater detail in the other volumes in this e-book series. Particular emphasis is placed on the goals and purpose of quantitative analysis and modeling, and the special challenges that cell biology holds for understanding life at the physical level.

Exocytosis and Endocytosis

Author : Florence Niedergang
Publisher : Humana
ISBN 13 : 9781071610466
Total Pages : 329 pages
Book Rating : 4.6/5 (14 download)

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Book Synopsis Exocytosis and Endocytosis by : Florence Niedergang

Download or read book Exocytosis and Endocytosis written by Florence Niedergang and published by Humana. This book was released on 2021-12-06 with total page 329 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume provides basic and cutting-edge methods and protocols to study the major characteristics of eukaryotic cells. Chapters detail the different pathways of endocytosis in vivo, real time imaging of endocytic steps, endocytosis in model organisms, super-resolution methods to follow proteins involved in exocytosis, specific protocols for exocytosis in specialized cells such as neutrophils or neuroendocrine cells, as well as secretion of exosomes. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and clearly written, Exocytosis and Endocytosis: Methods and Protocols is a valuable resource for researchers in the fields of cell biology, neurology, immunology, oncology, and those interested in studying protein trafficking and signal regulation.

Clathrin-Mediated Endocytosis

Author : Laura E. Swan
Publisher : Humana
ISBN 13 : 9781493993741
Total Pages : 253 pages
Book Rating : 4.9/5 (937 download)

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Book Synopsis Clathrin-Mediated Endocytosis by : Laura E. Swan

Download or read book Clathrin-Mediated Endocytosis written by Laura E. Swan and published by Humana. This book was released on 2019-09-04 with total page 253 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents a methodological introduction on clathrin-mediated endocytosis. Chapters guide readers through a number of model systems, purifications, reconstitutions, analysis techniques and systemic alterations of membrane function, which has been pivotal in understanding the role of clathrin and is panoply of interactors. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Clathrin-Mediated Endoytsis: Methods and Protocols aims to ensure successful results in the further study of this vital field.

Endocytosis and Signaling

Author : Christophe Lamaze
Publisher : Springer
ISBN 13 : 3319967045
Total Pages : 329 pages
Book Rating : 4.3/5 (199 download)

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Book Synopsis Endocytosis and Signaling by : Christophe Lamaze

Download or read book Endocytosis and Signaling written by Christophe Lamaze and published by Springer. This book was released on 2018-08-10 with total page 329 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on the context dependency of cell signaling by showing how the endosomal system helps to structure and regulate signaling pathways. The location and concentration of signaling nodes regulate their activation cycles and engagement with distinct effector pathways. Whilst many cell signaling pathways are initiated from the cell surface, endocytosis provides an opportunity for modulating signaling networks’ output. In this book, first a series of reviews describe the endocytic and endosomal system and show how these subcellular platforms sort and regulate a wide range of signaling pathway components and phenotypic outputs. The book then reviews the latest scientific insights into how endocytic trafficking and subcellular location modulate a set of major pathways that are essential to normal cellular function and organisms’ development.

Endocytosis

Author : Sandra Louise Schmid
Publisher : Cold Spring Harbor Perspective
ISBN 13 : 9781621820246
Total Pages : 0 pages
Book Rating : 4.8/5 (22 download)

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Book Synopsis Endocytosis by : Sandra Louise Schmid

Download or read book Endocytosis written by Sandra Louise Schmid and published by Cold Spring Harbor Perspective. This book was released on 2014 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: During endocytosis, extracellular molecules and plasma membrane components are selectively internalized by cells. This fundamental process of "cellular ingestion" is required for diverse activities such as nutrient uptake, cell adhesion and migration, signal transduction, cytokinesis, neurotransmission, and antigen presentation. Pathogens (e.g., HIV) exploit endocytic pathways to gain entry into cells, and defects in the endocytic machinery can lead to diseases such as cancer. Written and edited by experts in the field, this collection from Cold Spring Harbor Perspectives in Biology covers all of the major pathways of endocytosis and post-endocytic trafficking, and how they regulate cellular and organismal physiology. Contributors describe how cargo enters the cell via clathrin-mediated and clathrin-independent pathways, including caveolar endocytosis, micropinocytosis, cholesterol-sensitive endocytosis, phagocytosis, and the CLIC/GEEC pathway. They review the numerous machineries (e.g., Rab GTPases, tethering factors, and retromer) that transport cargo through endosomes and deliver it to lysosomes or recycle it back to the cell surface, and the signals and mechanisms governing these sorting decisions. Topics such as lysosomal dynamics, the biophysical challenges of bending membranes, and the evolution of endocytic systems are also covered. This volume also includes substantial discussion of the roles of endocytic trafficking in organismal development, physiology, and disease. It is thus an indispensable reference for cell biologists, but also neuroscientists, immunologists, developmental biologists, microbiologists, and others concerned with the physiological and therapeutic implications of this key cellular process.

Quantitative Fundamentals of Molecular and Cellular Bioengineering

Author : K. Dane Wittrup
Publisher : MIT Press
ISBN 13 : 0262042657
Total Pages : 593 pages
Book Rating : 4.2/5 (62 download)

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Book Synopsis Quantitative Fundamentals of Molecular and Cellular Bioengineering by : K. Dane Wittrup

Download or read book Quantitative Fundamentals of Molecular and Cellular Bioengineering written by K. Dane Wittrup and published by MIT Press. This book was released on 2020-01-07 with total page 593 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive presentation of essential topics for biological engineers, focusing on the development and application of dynamic models of biomolecular and cellular phenomena. This book describes the fundamental molecular and cellular events responsible for biological function, develops models to study biomolecular and cellular phenomena, and shows, with examples, how models are applied in the design and interpretation of experiments on biological systems. Integrating molecular cell biology with quantitative engineering analysis and design, it is the first textbook to offer a comprehensive presentation of these essential topics for chemical and biological engineering. The book systematically develops the concepts necessary to understand and study complex biological phenomena, moving from the simplest elements at the smallest scale and progressively adding complexity at the cellular organizational level, focusing on experimental testing of mechanistic hypotheses. After introducing the motivations for formulation of mathematical rate process models in biology, the text goes on to cover such topics as noncovalent binding interactions; quantitative descriptions of the transient, steady state, and equilibrium interactions of proteins and their ligands; enzyme kinetics; gene expression and protein trafficking; network dynamics; quantitative descriptions of growth dynamics; coupled transport and reaction; and discrete stochastic processes. The textbook is intended for advanced undergraduate and graduate courses in chemical engineering and bioengineering, and has been developed by the authors for classes they teach at MIT and the University of Minnesota.

Cell Biology by the Numbers

Author : Ron Milo
Publisher : Garland Science
ISBN 13 : 1317230698
Total Pages : 400 pages
Book Rating : 4.3/5 (172 download)

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Book Synopsis Cell Biology by the Numbers by : Ron Milo

Download or read book Cell Biology by the Numbers written by Ron Milo and published by Garland Science. This book was released on 2015-12-07 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: A Top 25 CHOICE 2016 Title, and recipient of the CHOICE Outstanding Academic Title (OAT) Award. How much energy is released in ATP hydrolysis? How many mRNAs are in a cell? How genetically similar are two random people? What is faster, transcription or translation?Cell Biology by the Numbers explores these questions and dozens of others provid

Cold Spring Harbor Symposia on Quantitative Biology

Author : Cold Spring Harbor Laboratory Press
Publisher :
ISBN 13 : 9780879690250
Total Pages : 423 pages
Book Rating : 4.6/5 (92 download)

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Book Synopsis Cold Spring Harbor Symposia on Quantitative Biology by : Cold Spring Harbor Laboratory Press

Download or read book Cold Spring Harbor Symposia on Quantitative Biology written by Cold Spring Harbor Laboratory Press and published by . This book was released on 1962-01-01 with total page 423 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Molecular Regulation of Endocytosis

Author : Brian Ceresa
Publisher : BoD – Books on Demand
ISBN 13 : 9535106627
Total Pages : 470 pages
Book Rating : 4.5/5 (351 download)

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Book Synopsis Molecular Regulation of Endocytosis by : Brian Ceresa

Download or read book Molecular Regulation of Endocytosis written by Brian Ceresa and published by BoD – Books on Demand. This book was released on 2012-07-06 with total page 470 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular Regulation of Endocytosis is a compilation of scientific "short stories" about the entry of external substances into cells. As one can see from the chapters, endocytosis regulates diverse processes such as homeostasis of the cell, signal transduction, entry of pathogens and viruses. In addition to the experimental techniques embedded in each chapter, entire chapters are dedicated to experimental approaches that will be useful to all scientists and their model systems. For those more clinically oriented, the final chapters look to the future and ways of utilizing endocytic pathways for therapeutic purposes.

Cell Biology E-Book

Author : Thomas D. Pollard
Publisher : Elsevier Health Sciences
ISBN 13 : 0323400027
Total Pages : 908 pages
Book Rating : 4.3/5 (234 download)

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Book Synopsis Cell Biology E-Book by : Thomas D. Pollard

Download or read book Cell Biology E-Book written by Thomas D. Pollard and published by Elsevier Health Sciences. This book was released on 2016-11-01 with total page 908 pages. Available in PDF, EPUB and Kindle. Book excerpt: The much-anticipated 3rd edition of Cell Biology delivers comprehensive, clearly written, and richly illustrated content to today’s students, all in a user-friendly format. Relevant to both research and clinical practice, this rich resource covers key principles of cellular function and uses them to explain how molecular defects lead to cellular dysfunction and cause human disease. Concise text and visually amazing graphics simplify complex information and help readers make the most of their study time. Clearly written format incorporates rich illustrations, diagrams, and charts. Uses real examples to illustrate key cell biology concepts. Includes beneficial cell physiology coverage. Clinically oriented text relates cell biology to pathophysiology and medicine. Takes a mechanistic approach to molecular processes. Major new didactic chapter flow leads with the latest on genome organization, gene expression and RNA processing. Boasts exciting new content including the evolutionary origin of eukaryotes, super resolution fluorescence microscopy, cryo-electron microscopy, gene editing by CRISPR/Cas9, contributions of high throughput DNA sequencing to understand genome organization and gene expression, microRNAs, IncRNAs, membrane-shaping proteins, organelle-organelle contact sites, microbiota, autophagy, ERAD, motor protein mechanisms, stem cells, and cell cycle regulation. Features specially expanded coverage of genome sequencing and regulation, endocytosis, cancer genomics, the cytoskeleton, DNA damage response, necroptosis, and RNA processing. Includes hundreds of new and updated diagrams and micrographs, plus fifty new protein and RNA structures to explain molecular mechanisms in unprecedented detail.

Advances in Systems Biology

Author : Igor I. Goryanin
Publisher : Springer Science & Business Media
ISBN 13 : 1441972099
Total Pages : 679 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis Advances in Systems Biology by : Igor I. Goryanin

Download or read book Advances in Systems Biology written by Igor I. Goryanin and published by Springer Science & Business Media. This book was released on 2011-12-08 with total page 679 pages. Available in PDF, EPUB and Kindle. Book excerpt: The International Society for Systems Biology (ISSB) is a society aimed at advancing world-wide systems biology research by providing a forum for scientific discussions and various academic services. The ISSB helps coordinate researchers to form alliances for meeting the unique needs of multidisciplinary and international systems biology research. The annual International Conference on Systems Biology (ICSB) serves as the main meeting for the society and is one of the largest academic and commercial gatherings under the broad heading of ‘Systems Biology’.

Computational Methods in Systems Biology

Author : Vincent Danos
Publisher : Springer Science & Business Media
ISBN 13 : 3540253750
Total Pages : 288 pages
Book Rating : 4.5/5 (42 download)

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Book Synopsis Computational Methods in Systems Biology by : Vincent Danos

Download or read book Computational Methods in Systems Biology written by Vincent Danos and published by Springer Science & Business Media. This book was released on 2005-03-24 with total page 288 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Computational Methods in Systems Biology (CMSB) workshop series was established in 2003 by Corrado Priami. The purpose of the workshop series is to help catalyze the convergence between computer scientists interested in language design, concurrency theory, software engineering or program verification, and physicists, mathematicians and biologists interested in the systems-level understanding of cellular processes. Systems biology was perceived as being increasingly in search of sophisticated modeling frameworks whether for representing and processing syst- level dynamics or for model analysis, comparison and refinement. One has here a clear-cut case of a must-explore field of application for the formal methods developed in computer science in the last decade. This proceedings consists of papers from the CMSB 2003 workshop. A good third of the 24 papers published here have a distinct formal methods origin; we take this as a confirmation that a synergy is building that will help solidify CMSB as a forum for cross-community exchange, thereby opening new theoretical avenues and making the field less of a potential application and more of a real one. Publication in Springer's new Lecture Notes in Bioinformatics (LNBI) offers particular visibility and impact, which we gratefully acknowledge. Our keynote speakers, Alfonso Valencia and Trey Ideker, gave challenging and somewhat humbling lectures: they made it clear that strong applications to systems biology are still some way ahead. We thank them all the more for accepting the invitation to speak and for the clarity and excitement they brought to the conference.