Proximity Labeling

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Proximity Labeling

Author : Murat Sunbul
Publisher : Springer Nature
ISBN 13 : 1493995375
Total Pages : 231 pages
Book Rating : 4.4/5 (939 download)

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Book Synopsis Proximity Labeling by : Murat Sunbul

Download or read book Proximity Labeling written by Murat Sunbul and published by Springer Nature. This book was released on 2019-05-23 with total page 231 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides detailed protocols and untold tips and tricks regarding the most well-known examples of proximity labeling methods, in which the protein of interest is genetically fused to or labeled with an enzyme that can generate short-lived reactive species to non-specifically label molecules within a certain radius of up to twenty nanometers. Beginning with peroxidase-based proximity labeling methods, the volume continues with BioID, proximity labeling methods that describe the proximity ligation assay to detect RNA-DNA interactions, UV cross-linking to demonstrate RNA-protein interactions, and how chemical and enzymatic reactivities can be improved upon DNA-DNA and protein-protein interactions, as well as “proximity-induced self-labeling,” where the radius of labeling is zero. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Proximity Labeling: Methods and Protocols serves as an ideal guide for researchers exploring the crucial roles that proximity-driven reactions play in biological systems.

Graph-Theoretic Concepts in Computer Science

Author : Peter Widmayer
Publisher : Springer
ISBN 13 : 354046784X
Total Pages : 416 pages
Book Rating : 4.5/5 (44 download)

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Book Synopsis Graph-Theoretic Concepts in Computer Science by : Peter Widmayer

Download or read book Graph-Theoretic Concepts in Computer Science written by Peter Widmayer and published by Springer. This book was released on 2003-06-26 with total page 416 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 25th International Workshop on Graph-Theorie Concepts in Computer Science WG'99, held at the Centre Stefano Frascini on Monte Verita, Ascona, Switzerland in June 1999. The 33 revised full papers presented together with four invited contributions were carefully reviewed and selected from 64 papers submitted. The papers provide a wealth of new results for various graph classes, graph computations, graph algorithms and graph-theoretical applications in a variety of fields.

Primary Cilia

Author :
Publisher : Academic Press
ISBN 13 : 9780080962825
Total Pages : 408 pages
Book Rating : 4.9/5 (628 download)

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Book Synopsis Primary Cilia by :

Download or read book Primary Cilia written by and published by Academic Press. This book was released on 2009-11-30 with total page 408 pages. Available in PDF, EPUB and Kindle. Book excerpt: In recent years, the role of cilia in the study of health, development and disease has been increasingly clear, and new discoveries have made this an exciting and important field of research. This comprehensive volume, a complement to the new three-volume treatment of cilia and flagella by King and Pazour, presents easy-to-follow protocols and detailed background information for researchers working with cilia and flagella. *Covers protocols for primary cilia across several systems and species * Both classic and state-of-the-art methods readily adaptable across model systems, and designed to last the test of time * Relevant to clinicians and scientists working in a wide range of fields

Enzyme-Mediated Ligation Methods

Author : Timo Nuijens
Publisher : Springer Nature
ISBN 13 : 1493995464
Total Pages : 369 pages
Book Rating : 4.4/5 (939 download)

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Book Synopsis Enzyme-Mediated Ligation Methods by : Timo Nuijens

Download or read book Enzyme-Mediated Ligation Methods written by Timo Nuijens and published by Springer Nature. This book was released on 2019-06-03 with total page 369 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume discusses different enzyme-catalyzed ligation methodologies for a variety of different chemical transformations. This book wants readers to view enzymes as a powerful tool in both academic and industrial research. Chapters in this book cover topics such as sortase A-mediated generation of site-specifically conjugated antibody-drug conjugates; omniligase-catalyzed inter- and intramolecular ligation; ligation catalyzed by microbial transglutaminase; peptide cyclization mediated by cyanobactin macrocyclases, butelase 1 and sortase A; using BioID as a tool for protein proximity labeling in living cells; and inducible, selective labeling of proteins via enzymatic oxidation of tyrosine. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Cutting-edge and thorough, Enzyme-Mediated Ligation Methods is a valuable resource for students and scientists from different disciplines who are interested in using enzymatic strategies to answer their research questions.

RNA-protein Interactions

Author : Kiyoshi Nagai
Publisher : Oxford University Press, USA
ISBN 13 :
Total Pages : 302 pages
Book Rating : 4.3/5 (91 download)

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Book Synopsis RNA-protein Interactions by : Kiyoshi Nagai

Download or read book RNA-protein Interactions written by Kiyoshi Nagai and published by Oxford University Press, USA. This book was released on 1994 with total page 302 pages. Available in PDF, EPUB and Kindle. Book excerpt: The study of RNA-protein interactions is crucial to understanding the mechanisms and control of gene expression and protein synthesis. The realization that RNAs are often far more biologically active than was previously appreciated has stimulated a great deal of new research in this field. Uniquely, in this book, the world's leading researchers have collaborated to produce a comprehensive and current review of RNA-protein interactions for all scientists working in this area. Timely, comprehensive, and authoritative, this new Frontiers title will be invaluable for all researchers in molecular biology, biochemistry and structural biology.

Biology of Mycobacterial Lipids

Author : Zeeshan Fatima
Publisher : Academic Press
ISBN 13 : 0323919448
Total Pages : 316 pages
Book Rating : 4.3/5 (239 download)

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Book Synopsis Biology of Mycobacterial Lipids by : Zeeshan Fatima

Download or read book Biology of Mycobacterial Lipids written by Zeeshan Fatima and published by Academic Press. This book was released on 2022-06-03 with total page 316 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biology of Mycobacterial Lipids covers various topics pertaining to the advancements and current research in the field of mycobacterial lipids, and on the significant progress in lipidomics, in recent times. The chapters present comprehensive, yet systematic cutting-edge research, comprising mycobacterial lipid terminologies, classifications, biosynthetic pathways, tools and techniques, and functional burgeoning. This unique reference book has contributions from pioneer researchers, experts, and eminent veterans from around the globe. It covers ground-breaking work that will bridge the gap between understanding biochemical patterns related to virulence, pathogenesis, and resistance and elucidating new targets for drug design, identifying biomarkers for predicting risk, early diagnosis, and therapeutic outcome. Covers major biochemical aspects of mycobacterial lipids, nomenclature, structure and classification, and metabolic pathways Focuses on recent trends and state-of-the-art technology, used in mycobacterial lipids study Brings together the functional aspects of mycobacterial lipidome, involvement of lipids in cellular network and signaling, its involvement in virulence and resistance, and host factor manipulations Highlights the discovery of lipid biomarkers, for diagnostic and therapeutic interventions, using mycobacterial lipidomic studies Presents lipids at the interface of various other biomolecules with integrative omics aspects

Biomolecular Interactions Part B

Author :
Publisher : Academic Press
ISBN 13 : 0128233540
Total Pages : 366 pages
Book Rating : 4.1/5 (282 download)

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Book Synopsis Biomolecular Interactions Part B by :

Download or read book Biomolecular Interactions Part B written by and published by Academic Press. This book was released on 2022-05-25 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biomolecular Interactions: Part A, Volume 169, the latest release in the Methods in Cell Biology series, highlights new advances in the field, with this new volume presenting interesting chapters on a variety of timely topics, including Emerging Mechanisms of Targeted Protein Degradation by Molecular Glues, Design and use of programmable DNA Hydrogels, Oligomerization of membrane receptors: Approaches to measure in live cells, Interactions of alpha-synuclein with biomolecules, Gel-electrophoresis based method for biomolecular interaction, Recombinant centrosome expression in bacterial system, Reconstituting CCL5-CCR5 complex for structural and mechanistic analysis, Protein engineering and design in ion channel receptors, and much more. Provides the authority and expertise of leading contributors from an international board of authors Presents the latest release in the Methods in Cell Biology series Updated release includes the latest information on biomolecular interactions instead of protein-protein interactions

Bacterial Secretion Systems

Author : Laure Journet
Publisher : Springer Nature
ISBN 13 : 1071634453
Total Pages : 607 pages
Book Rating : 4.0/5 (716 download)

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Book Synopsis Bacterial Secretion Systems by : Laure Journet

Download or read book Bacterial Secretion Systems written by Laure Journet and published by Springer Nature. This book was released on 2023-11-06 with total page 607 pages. Available in PDF, EPUB and Kindle. Book excerpt: This second edition details new and updated protocols that cover techniques used to study secretion systems. Chapters focus on identifying and localizing the different subunits, defining interactions within subunits, monitoring conformational changes, purifying and imaging of large complexes, defining the assembly pathway by fluorescence microscopy and the role of energy during assembly and/or secretion, identifying secreted effectors as well as using reporters to follow effector transport. Written in the highly successful Methods in Molecular Biology series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and key tips on troubleshooting and avoiding known pitfalls. Authoritative and cutting-edge, Bacterial Secretion Systems: Methods and Protocols- Second Edition aims to be a useful and practical guide to new researchers and experts looking to expand their knowledge.

Guide to Research Techniques in Neuroscience

Author : Matt Carter
Publisher : Academic Press
ISBN 13 : 0323915612
Total Pages : 416 pages
Book Rating : 4.3/5 (239 download)

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Book Synopsis Guide to Research Techniques in Neuroscience by : Matt Carter

Download or read book Guide to Research Techniques in Neuroscience written by Matt Carter and published by Academic Press. This book was released on 2022-03-26 with total page 416 pages. Available in PDF, EPUB and Kindle. Book excerpt: Modern neuroscience research is inherently multidisciplinary, with a wide variety of cutting edge new techniques to explore multiple levels of investigation. This Third Edition of Guide to Research Techniques in Neuroscience provides a comprehensive overview of classical and cutting edge methods including their utility, limitations, and how data are presented in the literature. This book can be used as an introduction to neuroscience techniques for anyone new to the field or as a reference for any neuroscientist while reading papers or attending talks. Nearly 200 updated full-color illustrations to clearly convey the theory and practice of neuroscience methods Expands on techniques from previous editions and covers many new techniques including in vivo calcium imaging, fiber photometry, RNA-Seq, brain spheroids, CRISPR-Cas9 genome editing, and more Clear, straightforward explanations of each technique for anyone new to the field A broad scope of methods, from noninvasive brain imaging in human subjects, to electrophysiology in animal models, to recombinant DNA technology in test tubes, to transfection of neurons in cell culture Detailed recommendations on where to find protocols and other resources for specific techniques "Walk-through" boxes that guide readers through experiments step-by-step

Advances in Chemical Proteomics

Author : Xudong Yao
Publisher : Elsevier
ISBN 13 : 012821435X
Total Pages : 270 pages
Book Rating : 4.1/5 (282 download)

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Book Synopsis Advances in Chemical Proteomics by : Xudong Yao

Download or read book Advances in Chemical Proteomics written by Xudong Yao and published by Elsevier. This book was released on 2021-10-22 with total page 270 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Chemical Proteomics provides essential concepts and recent applications on probes, tool compounds and concepts for chemical proteomics and then moves on to applications, including solid-phase reagents, fragment screening, designer compounds and protein lipidation. As the second volume in the Developments in Organic Chemistry series, each chapter is written by experts in the field. Users will find this to be a valuable reference for organic chemists and chemical biologists who are interested in developing tool compounds and reagents to measure and interrogate proteome, develop drug leads, and measure off-target effects and drug toxicity. Analytical chemists who are interested in better understanding organic chemistry behind commonly used reagents for quantitative proteomics and tools compounds in the emerging field of chemical proteomics will also benefit from this comprehensive resource on the topics presented. Provides an ideal, introductory book to chemical proteomics for organic chemists, pharmaceutical chemists and chemical biologists Includes advanced, recent applications and reviews in chemical proteomics Presents valuable work by a global team of experts from the field of proteomics

The Evolving Chromatin and Transcriptional Landscapes – Emerging Methods, Tools and Techniques

Author : Jean-Philippe Lambert
Publisher : Frontiers Media SA
ISBN 13 : 2889719219
Total Pages : 157 pages
Book Rating : 4.8/5 (897 download)

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Book Synopsis The Evolving Chromatin and Transcriptional Landscapes – Emerging Methods, Tools and Techniques by : Jean-Philippe Lambert

Download or read book The Evolving Chromatin and Transcriptional Landscapes – Emerging Methods, Tools and Techniques written by Jean-Philippe Lambert and published by Frontiers Media SA. This book was released on 2022-01-03 with total page 157 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Neuroproteomics

Author : Angus C. Nairn
Publisher : MDPI
ISBN 13 : 3039281062
Total Pages : 318 pages
Book Rating : 4.0/5 (392 download)

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Book Synopsis Neuroproteomics by : Angus C. Nairn

Download or read book Neuroproteomics written by Angus C. Nairn and published by MDPI. This book was released on 2020-02-12 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Neuroproteomics Special Issue overviews the unique challenges that must be addressed to carry out meaningful MS/proteomics analyses on neural tissues and the technologies that are available to meet these challenges. The articles on Alzheimer’s disease, addiction, and schizophrenia illustrate how MS/proteomics technologies can be used to improve our ability to diagnose and understand the molecular basis for neurological diseases. Several articles will be of interest to investigators beyond the field of neurological disorders. The review on the discovery of biofluid biomarkers of neurodegenerative dementias will be of interest to investigators searching for other disease biomarkers. Similarly, the review on the role of neuroproteomics in elucidating mechanisms of drug addiction provides an overview of the utility of MS/proteomics approaches for addressing critical questions in addiction neuroscience that should be applicable to investigators involved in virtually any area of biomedical research. Likewise, the article on developing targeted MS approaches for quantifying postsynaptic density proteins will be useful for any investigator who wishes to design targeted assays for virtually any protein. Finally, the peroxidase-mediated proximity labeling technology, described in the article on mapping the proteome of the synaptic cleft, will be of interest to investigators interested in mapping other spatially restricted proteomes.

High-Throughput Screening for Drug Discovery

Author : Shailendra K. Saxena
Publisher : BoD – Books on Demand
ISBN 13 : 1839629479
Total Pages : 130 pages
Book Rating : 4.8/5 (396 download)

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Book Synopsis High-Throughput Screening for Drug Discovery by : Shailendra K. Saxena

Download or read book High-Throughput Screening for Drug Discovery written by Shailendra K. Saxena and published by BoD – Books on Demand. This book was released on 2022-05-25 with total page 130 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book focuses on various aspects and properties of high-throughput screening (HTS), which is of great importance in the development of novel drugs to treat communicable and non-communicable diseases. Chapters in this volume discuss HTS methodologies, resources, and technologies and highlight the significance of HTS in personalized and precision medicine.

Integrated Methods in Protein Biochemistry: Part B

Author :
Publisher : Elsevier
ISBN 13 : 032399265X
Total Pages : 422 pages
Book Rating : 4.3/5 (239 download)

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Book Synopsis Integrated Methods in Protein Biochemistry: Part B by :

Download or read book Integrated Methods in Protein Biochemistry: Part B written by and published by Elsevier. This book was released on 2023-01-20 with total page 422 pages. Available in PDF, EPUB and Kindle. Book excerpt: Integrated Methods in Protein Biochemistry: Part B, Volume 678 in the Methods in Enzymology series, highlights new advances in the field, with this new volume presenting interesting chapters on a variety of topics, including Precise modification of native proteins, purification, and analysis of bioconjugates, NanoBiT-based methods to monitor the activation and modulation of RTKs, The interplay of G-protein ß? subunit and PLC-ß enzyme in PIP2 hydrolysis and downstream signaling, Structure and function of bacterial secretion system, Tools and protocols for probing protein sumoylation, Spectroscopic analysis of cysteine dioxygenase: a mammalian thiol-dioxygenase, DeGlyPHER: MS-based analysis of viral spike N-glycoforms, and more. Additional sections cover Covalent protein painting: MS-based protein footprinting, Characterization of GPCR signaling complexes using negative-staining electron microscopy, Probing protein misfolding and dissociation with free electron laser, Optimized protocol for the characterization of Cas12a activities, Proximity proteomics for the identification and characterization of extracellular vesicles, Structural and Functional characterization of lytic polysaccharide monooxygenases, and much more. Provides the authority and expertise of leading contributors from an international board of authors Presents the latest release in Methods in Enzymology series Includes the latest information on Integrated Methods in Protein Biochemistry

Advances in Protein Chemistry and Structural Biology

Author :
Publisher : Elsevier
ISBN 13 : 0443193436
Total Pages : 448 pages
Book Rating : 4.4/5 (431 download)

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Book Synopsis Advances in Protein Chemistry and Structural Biology by :

Download or read book Advances in Protein Chemistry and Structural Biology written by and published by Elsevier. This book was released on 2024-01-11 with total page 448 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Protein Chemistry and Structural Biology, Volume 138 covers reviews of methodology and research in all aspects of protein chemistry, including purification/expression, proteomics, modeling and structural determination and design. Chapters in this release include Proteomic Applications in Identifying Protein-Protein Interactions, Understanding functions of eEF1 translation elongation factors beyond translation. A proteomic approach, Proteomics provides insights into theranostic potential of extracellular vesicles, Towards a shareable functional analysis of the structural proteome, Functional unfoldomics, In-silico Network Pharmacology Study on Glycyrrhiza glabra: Analyzing the Immune-Boosting phytochemical properties of Siddha Medicinal Plant against COVID-19, and more. Other chapters cover In silico Network Pharmacology Analysis and Molecular Docking Validation of Swasa Kudori for Screening Druggable Phytoconstituents of Asthma, Proteomics and Genomics Insights on Malignant Osteosarcoma, Application of functional proteomics in understanding RNA Virus-Mediated Infection, Biofilm proteome of Staphylococcus aureus: implications for therapeutic interventions to biofilm-associated infections, A computational pipeline elucidating functions of conserved hypothetical Trypanosoma cruzi proteins based on public proteomic data, Functional Proteomics based on Protein Microarray Technology for Biomedical Research, and an Analysis of endoglucanases production using proteomics and metatranscriptomics. Includes new information about Protein Aggregation Presents chapters by a wide range of leading experts Cover new, cutting-edge information that will serve as an essential addition to any bookshelf or laboratory

Biomimetic Radical Chemistry and Applications

Author : Chryssostomos Chatgilialoglu
Publisher : MDPI
ISBN 13 : 3039283928
Total Pages : 300 pages
Book Rating : 4.0/5 (392 download)

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Book Synopsis Biomimetic Radical Chemistry and Applications by : Chryssostomos Chatgilialoglu

Download or read book Biomimetic Radical Chemistry and Applications written by Chryssostomos Chatgilialoglu and published by MDPI. This book was released on 2020-03-25 with total page 300 pages. Available in PDF, EPUB and Kindle. Book excerpt: The enormous importance of free radical chemistry for a variety of biological events, including ageing and inflammation, has attracted a strong interest in understanding the related mechanistic steps at the molecular level. Modelling the free radical chemical reactivity of biological systems is an important research area. When studying free-radical-based chemical mechanisms, biomimetic chemistry and the design of established biomimetic models come into play to perform experiments in a controlled environment that is suitably designed to be in strict connection with cellular conditions. This Special Issue gives the reader a wide overview of biomimetic radical chemistry, where molecular mechanisms have been defined and molecular libraries of products are developed to also be used as traces for the discovery of some relevant biological processes. Several subjects are presented, with 12 articles and 6 reviews written by specialists in the fields of DNA, proteins, lipids, biotechnological applications, and bioinspired synthesis, having “free radicals” as a common denominator.

Chemical Tools in Microbiology 1

Author :
Publisher : Academic Press
ISBN 13 : 0323911307
Total Pages : 308 pages
Book Rating : 4.3/5 (239 download)

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Book Synopsis Chemical Tools in Microbiology 1 by :

Download or read book Chemical Tools in Microbiology 1 written by and published by Academic Press. This book was released on 2022-03-22 with total page 308 pages. Available in PDF, EPUB and Kindle. Book excerpt: Clinical Microbiology, Volume 664 in the Methods in Enzymology series, highlights new advances in the field with this new volume presenting interesting chapters on a variety of topics, including Synthesis of chemical probes to study bacterial adenylating enzymes, Fluoroquinolone-derived fluorescent probes for studies of bacterial penetration and efflux, Combining informatics with ABPP to identify serine hydrolyses in bacteria, A Ligand Selection Strategy Identifies Chemical Probes Targeting the Proteases of SARS-CoV-2, Activity-based probes for bacterial histidine kinases, Metabolomic approaches to enzyme function and pathway discovery, Identification of bile salt hydrolase activity in gut microbiota, and much more. Other chapters cover Multiplex fluorescence screening and identification using multiplex TMT, Customized Peptidoglycan Surfaces to Investigate Innate Immune Recognition via SPR, Site-Specific Siderocalin Binding to Ferric and Ferric-Free Enterobactin As Revealed by Mass Spectrometry, Proteomics of short-chain fatty acid probes in Salmonella, Development and application of highly sensitive labeling reagents for amino acids, and a variety of other timely topics. Provides the authority and expertise of leading contributors from an international board of authors Presents the latest release in Methods in Enzymology serials Updated release includes the latest information on Chemical Microbiology