Phylogenetics And Ecology

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Phylogenetic Ecology

Author : Nathan G. Swenson
Publisher : University of Chicago Press
ISBN 13 : 022667150X
Total Pages : 229 pages
Book Rating : 4.2/5 (266 download)

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Book Synopsis Phylogenetic Ecology by : Nathan G. Swenson

Download or read book Phylogenetic Ecology written by Nathan G. Swenson and published by University of Chicago Press. This book was released on 2019-11-20 with total page 229 pages. Available in PDF, EPUB and Kindle. Book excerpt: Over the past decade, ecologists have increasingly embraced phylogenetics, the study of evolutionary relationships among species. As a result, they have come to discover the field’s power to illuminate present ecological patterns and processes. Ecologists are now investigating whether phylogenetic diversity is a better measure of ecosystem health than more traditional metrics like species diversity, whether it can predict the future structure and function of communities and ecosystems, and whether conservationists might prioritize it when formulating conservation plans. In Phylogenetic Ecology, Nathan G. Swenson synthesizes this nascent field’s major conceptual, methodological, and empirical developments to provide students and practicing ecologists with a foundational overview. Along the way, he highlights those realms of phylogenetic ecology that will likely increase in relevance—such as the burgeoning subfield of phylogenomics—and shows how ecologists might lean on these new perspectives to inform their research programs.

Phylogenies in Ecology

Author : Marc W. Cadotte
Publisher : Princeton University Press
ISBN 13 : 0691157685
Total Pages : 264 pages
Book Rating : 4.6/5 (911 download)

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Book Synopsis Phylogenies in Ecology by : Marc W. Cadotte

Download or read book Phylogenies in Ecology written by Marc W. Cadotte and published by Princeton University Press. This book was released on 2016-08-09 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenies in Ecology is the first book to critically review the application of phylogenetic methods in ecology, and it serves as a primer to working ecologists and students of ecology wishing to understand these methods. This book demonstrates how phylogenetic information is transforming ecology by offering fresh ways to estimate the similarities and differences among species, and by providing deeper, evolutionary-based insights on species distributions, coexistence, and niche partitioning. Marc Cadotte and Jonathan Davies examine this emerging area's explosive growth, allowing for this new body of hypotheses testing. Cadotte and Davies systematically look at all the main areas of current ecophylogenetic methodology, testing, and inference. Each chapter of their book covers a unique topic, emphasizes key assumptions, and introduces the appropriate statistical methods and null models required for testing phylogenetically informed hypotheses. The applications presented throughout are supported and connected by examples relying on real-world data that have been analyzed using the open-source programming language, R. Showing how phylogenetic methods are shedding light on fundamental ecological questions related to species coexistence, conservation, and global change, Phylogenies in Ecology will interest anyone who thinks that evolution might be important in their data.

Functional and Phylogenetic Ecology in R

Author : Nathan G. Swenson
Publisher : Springer Science & Business Media
ISBN 13 : 1461495423
Total Pages : 217 pages
Book Rating : 4.4/5 (614 download)

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Book Synopsis Functional and Phylogenetic Ecology in R by : Nathan G. Swenson

Download or read book Functional and Phylogenetic Ecology in R written by Nathan G. Swenson and published by Springer Science & Business Media. This book was released on 2014-03-26 with total page 217 pages. Available in PDF, EPUB and Kindle. Book excerpt: Functional and Phylogenetic Ecology in R is designed to teach readers to use R for phylogenetic and functional trait analyses. Over the past decade, a dizzying array of tools and methods were generated to incorporate phylogenetic and functional information into traditional ecological analyses. Increasingly these tools are implemented in R, thus greatly expanding their impact. Researchers getting started in R can use this volume as a step-by-step entryway into phylogenetic and functional analyses for ecology in R. More advanced users will be able to use this volume as a quick reference to understand particular analyses. The volume begins with an introduction to the R environment and handling relevant data in R. Chapters then cover phylogenetic and functional metrics of biodiversity; null modeling and randomizations for phylogenetic and functional trait analyses; integrating phylogenetic and functional trait information; and interfacing the R environment with a popular C-based program. This book presents a unique approach through its focus on ecological analyses and not macroevolutionary analyses. The author provides his own code, so that the reader is guided through the computational steps to calculate the desired metrics. This guided approach simplifies the work of determining which package to use for any given analysis. Example datasets are shared to help readers practice, and readers can then quickly turn to their own datasets.

Phylogeny, Ecology, and Behavior

Author : Daniel R. Brooks
Publisher : University of Chicago Press
ISBN 13 : 9780226075716
Total Pages : 456 pages
Book Rating : 4.0/5 (757 download)

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Book Synopsis Phylogeny, Ecology, and Behavior by : Daniel R. Brooks

Download or read book Phylogeny, Ecology, and Behavior written by Daniel R. Brooks and published by University of Chicago Press. This book was released on 1991 with total page 456 pages. Available in PDF, EPUB and Kindle. Book excerpt: "The merits of this work are many. A rigorous integration of phylogenetic hypotheses into studies of adaptation, adaptive radiation, and coevolution is absolutely necessary and can change dramatically our collective 'gestalt' about much in evolutionary biology. The authors advance and illustrate this thesis beautifully. The writing is often lucid, the examples are plentiful and diverse, and the juxtaposition of examples from different biological systems argues forcefully for the validity of the thesis. Many new insights are offered here, and the work is usually accessible to both the practiced phylogeneticist and the naive ecologist."—Joseph Travis, Florida State University "[Phylogeny, Ecology, and Behavior] presents its arguments forcefully and cogently, with ample . . .support. Brooks and McLennan conclude as they began, with the comment that evolution is a result, not a process, and that it is the result of an interaction of a variety of processes, environmental and historical. Evolutionary explanations must consider all these components, else they are incomplete. As Darwin's explanations of descent with modification integrated genealogical and ecological information, so must workers now incorporate historical and nonhistorical, and biological and nonbiological, processes in their evolutionary perspective."—Marvalee H. Wake, Bioscience "This book is well-written and thought-provoking, and should be read by those of us who do not routinely turn to phylogenetic analysis when investigating adaptation, evolutionary ecology and co-evolution."—Mark R. MacNair, Journal of Natural History

Phylogenies in Ecology

Author : Marc W. Cadotte
Publisher : Princeton University Press
ISBN 13 : 1400881196
Total Pages : 264 pages
Book Rating : 4.4/5 (8 download)

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Book Synopsis Phylogenies in Ecology by : Marc W. Cadotte

Phylogenetics and Ecology

Author : Paul Eggleton
Publisher : Academic Press
ISBN 13 :
Total Pages : 400 pages
Book Rating : 4.:/5 (318 download)

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Book Synopsis Phylogenetics and Ecology by : Paul Eggleton

Download or read book Phylogenetics and Ecology written by Paul Eggleton and published by Academic Press. This book was released on 1994-11-10 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: The relationship between systematics and ecology has recently been invigorated, and developed a long way from the "old" field of comparative biology. This change has been two-fold. Advances in phylogenetic research have allowed explicit phylogenetic hypotheses to be constructed for a range of different groups of organisms, and ecologists are now more aware that organism traits are influenced by the interaction of past and present. This volume discusses the impact of these modern phylogenetic methods on ecology, especially those using comparative methods. Although unification of these areas has proved difficult, a number of conclusions can be drawn from the text. These include the need for a "working" bridge between evolutionary biologists using logic-based cladistic methods and those using probability-based statistical methods, for care in the selection of tree types for comparative studies and for systematists to attempt to analyse ecologically important groups. Comparative ecologists and systematists need to come together to develop these ideas further, but this volume presents a very useful starting point for all those interested in systematics and ecology.

Handbook of Trait-Based Ecology

Author : Francesco de Bello
Publisher : Cambridge University Press
ISBN 13 : 1108472915
Total Pages : 311 pages
Book Rating : 4.1/5 (84 download)

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Book Synopsis Handbook of Trait-Based Ecology by : Francesco de Bello

Download or read book Handbook of Trait-Based Ecology written by Francesco de Bello and published by Cambridge University Press. This book was released on 2021-03-11 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: Trait-based ecology is rapidly expanding. This comprehensive and accessible guide covers the main concepts and tools in functional ecology.

Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology

Author : László Zsolt Garamszegi
Publisher : Springer
ISBN 13 : 3662435500
Total Pages : 552 pages
Book Rating : 4.6/5 (624 download)

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Book Synopsis Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology by : László Zsolt Garamszegi

Download or read book Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology written by László Zsolt Garamszegi and published by Springer. This book was released on 2014-07-29 with total page 552 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenetic comparative approaches are powerful analytical tools for making evolutionary inferences from interspecific data and phylogenies. The phylogenetic toolkit available to evolutionary biologists is currently growing at an incredible speed, but most methodological papers are published in the specialized statistical literature and many are incomprehensible for the user community. This textbook provides an overview of several newly developed phylogenetic comparative methods that allow to investigate a broad array of questions on how phenotypic characters evolve along the branches of phylogeny and how such mechanisms shape complex animal communities and interspecific interactions. The individual chapters were written by the leading experts in the field and using a language that is accessible for practicing evolutionary biologists. The authors carefully explain the philosophy behind different methodologies and provide pointers – mostly using a dynamically developing online interface – on how these methods can be implemented in practice. These “conceptual” and “practical” materials are essential for expanding the qualification of both students and scientists, but also offer a valuable resource for educators. Another value of the book are the accompanying online resources (available at: http://www.mpcm-evolution.com), where the authors post and permanently update practical materials to help embed methods into practice.

Biodiversity Conservation and Phylogenetic Systematics

Author : Roseli Pellens
Publisher : Springer
ISBN 13 : 3319224611
Total Pages : 396 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Biodiversity Conservation and Phylogenetic Systematics by : Roseli Pellens

Download or read book Biodiversity Conservation and Phylogenetic Systematics written by Roseli Pellens and published by Springer. This book was released on 2016-02-24 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is about phylogenetic diversity as an approach to reduce biodiversity losses in this period of mass extinction. Chapters in the first section deal with questions such as the way we value phylogenetic diversity among other criteria for biodiversity conservation; the choice of measures; the loss of phylogenetic diversity with extinction; the importance of organisms that are deeply branched in the tree of life, and the role of relict species. The second section is composed by contributions exploring methodological aspects, such as how to deal with abundance, sampling effort, or conflicting trees in analysis of phylogenetic diversity. The last section is devoted to applications, showing how phylogenetic diversity can be integrated in systematic conservation planning, in EDGE and HEDGE evaluations. This wide coverage makes the book a reference for academics, policy makers and stakeholders dealing with biodiversity conservation.

Phylogeny and Conservation

Author : Andy Purvis
Publisher : Cambridge University Press
ISBN 13 : 9780521825023
Total Pages : 456 pages
Book Rating : 4.8/5 (25 download)

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Book Synopsis Phylogeny and Conservation by : Andy Purvis

Download or read book Phylogeny and Conservation written by Andy Purvis and published by Cambridge University Press. This book was released on 2005-09-22 with total page 456 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogeny is a potentially powerful tool for conserving biodiversity. This book explores how it can be used to tackle questions of great practical importance and urgency for conservation. Using case studies from many different taxa and regions of the world, the volume evaluates how useful phylogeny is in understanding the processes that have generated today's diversity and the processes that now threaten it. The urgency with which conservation decisions have to be made as well as the need for the best possible decisions make this volume of great value to researchers, practitioners and policy-makers.

Phylogenetics

Author : Charles Semple
Publisher : Oxford University Press on Demand
ISBN 13 : 9780198509424
Total Pages : 258 pages
Book Rating : 4.5/5 (94 download)

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Book Synopsis Phylogenetics by : Charles Semple

Download or read book Phylogenetics written by Charles Semple and published by Oxford University Press on Demand. This book was released on 2003 with total page 258 pages. Available in PDF, EPUB and Kindle. Book excerpt: 'Phylogenetics' is the reconstruction and analysis of phylogenetic (evolutionary) trees and networks based on inherited characteristics. It is a flourishing area of intereaction between mathematics, statistics, computer science and biology.The main role of phylogenetic techniques lies in evolutionary biology, where it is used to infer historical relationships between species. However, the methods are also relevant to a diverse range of fields including epidemiology, ecology, medicine, as well as linguistics and cognitive psychologyThis graduate-level book, based on the authors lectures at The University of Canterbury, New Zealand, focuses on the mathematical aspects of phylogenetics. It brings together the central results of the field (providing proofs of the main theorem), outlines their biological significance,and indicateshow algorithms may be derived. The presentation is self-contained and relies on discrete mathematics with some probability theory. A set of exercises and at least one specialist topic ends each chapter.This book is intended for biologists interested in the mathematical theory behind phylogenetic methods, and for mathematicians, statisticians, and computer scientists eager to learn about this emerging area of discrete mathematics.'Phylogenetics' in the 24th volume in the Oxford Lecture Series in Mathematics and its Applications. This series contains short books suitable for graduate students and researchers who want a well-written account of mathematics that is fundamental to current to research. The series emphasises futuredirections of research and focuses on genuine applications of mathematics to finance, engineering and the physical and biological sciences.

Phylogenetics

Author : E. O. Wiley
Publisher : John Wiley & Sons
ISBN 13 : 0470905964
Total Pages : 444 pages
Book Rating : 4.4/5 (79 download)

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Book Synopsis Phylogenetics by : E. O. Wiley

Download or read book Phylogenetics written by E. O. Wiley and published by John Wiley & Sons. This book was released on 2011-06-07 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: The long-awaited revision of the industry standard on phylogenetics Since the publication of the first edition of this landmark volume more than twenty-five years ago, phylogenetic systematics has taken its place as the dominant paradigm of systematic biology. It has profoundly influenced the way scientists study evolution, and has seen many theoretical and technical advances as the field has continued to grow. It goes almost without saying that the next twenty-five years of phylogenetic research will prove as fascinating as the first, with many exciting developments yet to come. This new edition of Phylogenetics captures the very essence of this rapidly evolving discipline. Written for the practicing systematist and phylogeneticist, it addresses both the philosophical and technical issues of the field, as well as surveys general practices in taxonomy. Major sections of the book deal with the nature of species and higher taxa, homology and characters, trees and tree graphs, and biogeography—the purpose being to develop biologically relevant species, character, tree, and biogeographic concepts that can be applied fruitfully to phylogenetics. The book then turns its focus to phylogenetic trees, including an in-depth guide to tree-building algorithms. Additional coverage includes: Parsimony and parsimony analysis Parametric phylogenetics including maximum likelihood and Bayesian approaches Phylogenetic classification Critiques of evolutionary taxonomy, phenetics, and transformed cladistics Specimen selection, field collecting, and curating Systematic publication and the rules of nomenclature Providing a thorough synthesis of the field, this important update to Phylogenetics is essential for students and researchers in the areas of evolutionary biology, molecular evolution, genetics and evolutionary genetics, paleontology, physical anthropology, and zoology.

Analysis of Phylogenetics and Evolution with R

Author : Emmanuel Paradis
Publisher : Springer Science & Business Media
ISBN 13 : 0387351000
Total Pages : 221 pages
Book Rating : 4.3/5 (873 download)

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Book Synopsis Analysis of Phylogenetics and Evolution with R by : Emmanuel Paradis

Download or read book Analysis of Phylogenetics and Evolution with R written by Emmanuel Paradis and published by Springer Science & Business Media. This book was released on 2006-11-25 with total page 221 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.

Phylogenetic Diversity

Author : Rosa A. Scherson
Publisher : Springer
ISBN 13 : 3319931458
Total Pages : 217 pages
Book Rating : 4.3/5 (199 download)

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Book Synopsis Phylogenetic Diversity by : Rosa A. Scherson

Download or read book Phylogenetic Diversity written by Rosa A. Scherson and published by Springer. This book was released on 2018-08-31 with total page 217 pages. Available in PDF, EPUB and Kindle. Book excerpt: “Biodiversity” refers to the variety of life. It is now agreed that there is a “biodiversity crisis”, corresponding to extinction rates of species that may be 1000 times what is thought to be “normal”. Biodiversity science has a higher profile than ever, with the new Intergovernmental Science-Policy Platform on Biodiversity and Ecosystem Services involving more than 120 countries and 1000s of scientists. At the same time, the discipline is re-evaluating its foundations – including its philosophy and even core definitions. The value of biodiversity is being debated. In this context, the tree of life (“phylogeny”) is emerging as an important way to look at biodiversity, with relevance cutting across current areas of concern – from the question of resilience within ecosystems, to conservation priorities for globally threatened species – while capturing the values of biodiversity that have been hard to quantify, including resilience and maintaining options for future generations. This increased appreciation of the importance of conserving “phylogenetic diversity”, from microbial communities in the human gut to global threatened species, has inevitably resulted in an explosion of new indices, methods, and case studies. This book recognizes and responds to the timely opportunity for synthesis and sharing experiences in practical applications. The book recognizes that the challenge of finding a synthesis, and building shared concepts and a shared toolbox, requires both an appreciation of the past and a look into the future. Thus, the book is organized as a flow from history, concepts and philosophy, through to methods and tools, and followed by selected case studies. A positive vision and plan of action emerges from these chapters, that includes coping with inevitable uncertainties, effectively communicating the importance of this “evolutionary heritage” to the public and to policy-makers, and ultimately contributing to biodiversity conservation policy from local to global scales.

Interaction and Coevolution

Author : John N. Thompson
Publisher : University of Chicago Press
ISBN 13 : 022612732X
Total Pages : 190 pages
Book Rating : 4.2/5 (261 download)

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Book Synopsis Interaction and Coevolution by : John N. Thompson

Download or read book Interaction and Coevolution written by John N. Thompson and published by University of Chicago Press. This book was released on 2014-02-14 with total page 190 pages. Available in PDF, EPUB and Kindle. Book excerpt: “It is not only the species that change evolutionarily through interactions . . . the interactions themselves also change.” Thus states John N. Thompson in the foreword to Interaction and Coevolution, the first title in his series of books exploring the relentless nature of evolution and the processes that shape the web of life. Originally published in 1982 more as an idea piece—an early attempt to synthesize then academically distinct but logically linked strands of ecological thought and to suggest avenues for further research—than as a data-driven monograph, Interaction and Coevolution would go on to be considered a landmark study that pointed to the beginning of a new discipline. Through chapters on antagonism, mutualism, and the effects of these interactions on populations, speciation, and community structure, Thompson seeks to explain not only how interactions differ in the selection pressures they exert on species, but also when interactions are most likely to lead to coevolution. In this era of climate change and swiftly transforming environments, the ideas Thompson puts forward in Interaction and Coevolution are more relevant than ever before.

The Theory of Evolution

Author : Samuel M. Scheiner
Publisher : University of Chicago Press
ISBN 13 : 022667133X
Total Pages : 455 pages
Book Rating : 4.2/5 (266 download)

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Book Synopsis The Theory of Evolution by : Samuel M. Scheiner

Download or read book The Theory of Evolution written by Samuel M. Scheiner and published by University of Chicago Press. This book was released on 2020-04-03 with total page 455 pages. Available in PDF, EPUB and Kindle. Book excerpt: Darwin’s nineteenth-century writings laid the foundations for modern studies of evolution, and theoretical developments in the mid-twentieth century fostered the Modern Synthesis. Since that time, a great deal of new biological knowledge has been generated, including details of the genetic code, lateral gene transfer, and developmental constraints. Our improved understanding of these and many other phenomena have been working their way into evolutionary theory, changing it and improving its correspondence with evolution in nature. And while the study of evolution is thriving both as a basic science to understand the world and in its applications in agriculture, medicine, and public health, the broad scope of evolution—operating across genes, whole organisms, clades, and ecosystems—presents a significant challenge for researchers seeking to integrate abundant new data and content into a general theory of evolution. This book gives us that framework and synthesis for the twenty-first century. The Theory of Evolution presents a series of chapters by experts seeking this integration by addressing the current state of affairs across numerous fields within evolutionary biology, ranging from biogeography to multilevel selection, speciation, and macroevolutionary theory. By presenting current syntheses of evolution’s theoretical foundations and their growth in light of new datasets and analyses, this collection will enhance future research and understanding.

Relentless Evolution

Author : John N. Thompson
Publisher : University of Chicago Press
ISBN 13 : 022601889X
Total Pages : 510 pages
Book Rating : 4.2/5 (26 download)

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Book Synopsis Relentless Evolution by : John N. Thompson

Download or read book Relentless Evolution written by John N. Thompson and published by University of Chicago Press. This book was released on 2013-04-15 with total page 510 pages. Available in PDF, EPUB and Kindle. Book excerpt: At a glance, most species seem adapted to the environment in which they live. Yet species relentlessly evolve, and populations within species evolve in different ways. Evolution, as it turns out, is much more dynamic than biologists realized just a few decades ago. In Relentless Evolution, John N. Thompson explores why adaptive evolution never ceases and why natural selection acts on species in so many different ways. Thompson presents a view of life in which ongoing evolution is essential and inevitable. Each chapter focuses on one of the major problems in adaptive evolution: How fast is evolution? How strong is natural selection? How do species co-opt the genomes of other species as they adapt? Why does adaptive evolution sometimes lead to more, rather than less, genetic variation within populations? How does the process of adaptation drive the evolution of new species? How does coevolution among species continually reshape the web of life? And, more generally, how are our views of adaptive evolution changing? Relentless Evolution draws on studies of all the major forms of life—from microbes that evolve in microcosms within a few weeks to plants and animals that sometimes evolve in detectable ways within a few decades. It shows evolution not as a slow and stately process, but rather as a continual and sometimes frenetic process that favors yet more evolutionary change.