Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology

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Publisher : Springer
ISBN 13 : 3662435500
Total Pages : 553 pages
Book Rating : 4.6/5 (624 download)

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Book Synopsis Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology by : László Zsolt Garamszegi

Download or read book Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology written by László Zsolt Garamszegi and published by Springer. This book was released on 2014-07-29 with total page 553 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenetic comparative approaches are powerful analytical tools for making evolutionary inferences from interspecific data and phylogenies. The phylogenetic toolkit available to evolutionary biologists is currently growing at an incredible speed, but most methodological papers are published in the specialized statistical literature and many are incomprehensible for the user community. This textbook provides an overview of several newly developed phylogenetic comparative methods that allow to investigate a broad array of questions on how phenotypic characters evolve along the branches of phylogeny and how such mechanisms shape complex animal communities and interspecific interactions. The individual chapters were written by the leading experts in the field and using a language that is accessible for practicing evolutionary biologists. The authors carefully explain the philosophy behind different methodologies and provide pointers – mostly using a dynamically developing online interface – on how these methods can be implemented in practice. These “conceptual” and “practical” materials are essential for expanding the qualification of both students and scientists, but also offer a valuable resource for educators. Another value of the book are the accompanying online resources (available at: http://www.mpcm-evolution.com), where the authors post and permanently update practical materials to help embed methods into practice.

Phylogenetic Comparative Methods in R

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Author :
Publisher : Princeton University Press
ISBN 13 : 0691219044
Total Pages : 441 pages
Book Rating : 4.6/5 (912 download)

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Book Synopsis Phylogenetic Comparative Methods in R by : Liam J. Revell

Download or read book Phylogenetic Comparative Methods in R written by Liam J. Revell and published by Princeton University Press. This book was released on 2022-07-12 with total page 441 pages. Available in PDF, EPUB and Kindle. Book excerpt: An authoritative introduction to the latest comparative methods in evolutionary biology Phylogenetic comparative methods are a suite of statistical approaches that enable biologists to analyze and better understand the evolutionary tree of life, and shed vital new light on patterns of divergence and common ancestry among all species on Earth. This textbook shows how to carry out phylogenetic comparative analyses in the R statistical computing environment. Liam Revell and Luke Harmon provide an incisive conceptual overview of each method along with worked examples using real data and challenge problems that encourage students to learn by doing. By working through this book, students will gain a solid foundation in these methods and develop the skills they need to interpret patterns in the tree of life. Covers every major method of modern phylogenetic comparative analysis in R Explains the basics of R and discusses topics such as trait evolution, diversification, trait-dependent diversification, biogeography, and visualization Features a wealth of exercises and challenge problems Serves as an invaluable resource for students and researchers, with applications in ecology, evolution, anthropology, disease transmission, conservation biology, and a host of other areas Written by two of today’s leading developers of phylogenetic comparative methods

Phylogenetic Comparative Methods

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Publisher :
ISBN 13 : 9781719584463
Total Pages : 286 pages
Book Rating : 4.5/5 (844 download)

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Book Synopsis Phylogenetic Comparative Methods by : Luke J. Harmon

Download or read book Phylogenetic Comparative Methods written by Luke J. Harmon and published by . This book was released on 2018-05-23 with total page 286 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to statistical analyses of phylogenetic trees using comparative methods.

Analysis of Phylogenetics and Evolution with R

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Publisher : Springer Science & Business Media
ISBN 13 : 0387351000
Total Pages : 221 pages
Book Rating : 4.3/5 (873 download)

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Book Synopsis Analysis of Phylogenetics and Evolution with R by : Emmanuel Paradis

Download or read book Analysis of Phylogenetics and Evolution with R written by Emmanuel Paradis and published by Springer Science & Business Media. This book was released on 2006-11-25 with total page 221 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.

Phylogenies and the Comparative Method in Animal Behavior

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Publisher : Oxford University Press, USA
ISBN 13 : 0195092104
Total Pages : 429 pages
Book Rating : 4.1/5 (95 download)

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Book Synopsis Phylogenies and the Comparative Method in Animal Behavior by : Emília P. Martins

Download or read book Phylogenies and the Comparative Method in Animal Behavior written by Emília P. Martins and published by Oxford University Press, USA. This book was released on 1996 with total page 429 pages. Available in PDF, EPUB and Kindle. Book excerpt: In the last ten years, the "comparative method" has been revolutionized by modern statistical ways of incorporating phylogenies into the design and analysis of comparative studies. The results of this revolution are particularly important in the study of animal behavior, which has relied on interspecific comparisons to infer universal trends and evolutionary patterns. The chapters of this edited volume consider the impact of modern phylogenetic comparative methods on the study of animal behavior and discuss the main issues that need to be considered in design and analysis of a comparative study, considers possible differences between the evolution of behavior and the evolution of morphology, and reviews how phylogenetic comparative studies have been used in certain areas of behavioral research.

The Comparative Approach in Evolutionary Anthropology and Biology

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Publisher : University of Chicago Press
ISBN 13 : 0226608980
Total Pages : 392 pages
Book Rating : 4.2/5 (266 download)

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Book Synopsis The Comparative Approach in Evolutionary Anthropology and Biology by : Charles L. Nunn

Download or read book The Comparative Approach in Evolutionary Anthropology and Biology written by Charles L. Nunn and published by University of Chicago Press. This book was released on 2011-11-30 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: And when new fossils are found, such as those of the tiny humans of Flores, scientists compare these remains to other fossils and contemporary humans.

The Comparative Method in Evolutionary Biology

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Publisher : Oxford University Press, USA
ISBN 13 :
Total Pages : 252 pages
Book Rating : 4.4/5 (91 download)

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Book Synopsis The Comparative Method in Evolutionary Biology by : Paul H. Harvey

Download or read book The Comparative Method in Evolutionary Biology written by Paul H. Harvey and published by Oxford University Press, USA. This book was released on 1991 with total page 252 pages. Available in PDF, EPUB and Kindle. Book excerpt: Several different methods for analyzing comparative data have been suggested over the past few years. This book places comparative studies firmly in their biological context, and equally firmly in their statistical context.

Parasite Diversity and Diversification

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Publisher : Cambridge University Press
ISBN 13 : 1107037654
Total Pages : 503 pages
Book Rating : 4.1/5 (7 download)

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Book Synopsis Parasite Diversity and Diversification by : Serge Morand

Download or read book Parasite Diversity and Diversification written by Serge Morand and published by Cambridge University Press. This book was released on 2015-02-26 with total page 503 pages. Available in PDF, EPUB and Kindle. Book excerpt: By joining phylogenetics and evolutionary ecology, this book explores the patterns of parasite diversity while revealing diversification processes.

The Phylogenetic Handbook

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Publisher : Cambridge University Press
ISBN 13 : 0521877105
Total Pages : 750 pages
Book Rating : 4.5/5 (218 download)

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Book Synopsis The Phylogenetic Handbook by : Marco Salemi

Download or read book The Phylogenetic Handbook written by Marco Salemi and published by Cambridge University Press. This book was released on 2009-03-26 with total page 750 pages. Available in PDF, EPUB and Kindle. Book excerpt: A broad, hands on guide with detailed explanations of current methodology, relevant exercises and popular software tools.

Phylogenetics

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Publisher : John Wiley & Sons
ISBN 13 : 1118017870
Total Pages : 444 pages
Book Rating : 4.1/5 (18 download)

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Book Synopsis Phylogenetics by : E. O. Wiley

Download or read book Phylogenetics written by E. O. Wiley and published by John Wiley & Sons. This book was released on 2011-10-11 with total page 444 pages. Available in PDF, EPUB and Kindle. Book excerpt: The long-awaited revision of the industry standard on phylogenetics Since the publication of the first edition of this landmark volume more than twenty-five years ago, phylogenetic systematics has taken its place as the dominant paradigm of systematic biology. It has profoundly influenced the way scientists study evolution, and has seen many theoretical and technical advances as the field has continued to grow. It goes almost without saying that the next twenty-five years of phylogenetic research will prove as fascinating as the first, with many exciting developments yet to come. This new edition of Phylogenetics captures the very essence of this rapidly evolving discipline. Written for the practicing systematist and phylogeneticist, it addresses both the philosophical and technical issues of the field, as well as surveys general practices in taxonomy. Major sections of the book deal with the nature of species and higher taxa, homology and characters, trees and tree graphs, and biogeography—the purpose being to develop biologically relevant species, character, tree, and biogeographic concepts that can be applied fruitfully to phylogenetics. The book then turns its focus to phylogenetic trees, including an in-depth guide to tree-building algorithms. Additional coverage includes: Parsimony and parsimony analysis Parametric phylogenetics including maximum likelihood and Bayesian approaches Phylogenetic classification Critiques of evolutionary taxonomy, phenetics, and transformed cladistics Specimen selection, field collecting, and curating Systematic publication and the rules of nomenclature Providing a thorough synthesis of the field, this important update to Phylogenetics is essential for students and researchers in the areas of evolutionary biology, molecular evolution, genetics and evolutionary genetics, paleontology, physical anthropology, and zoology.

Handbook of Trait-Based Ecology

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Publisher : Cambridge University Press
ISBN 13 : 1108472915
Total Pages : 311 pages
Book Rating : 4.1/5 (84 download)

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Book Synopsis Handbook of Trait-Based Ecology by : Francesco de Bello

Download or read book Handbook of Trait-Based Ecology written by Francesco de Bello and published by Cambridge University Press. This book was released on 2021-03-11 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: Trait-based ecology is rapidly expanding. This comprehensive and accessible guide covers the main concepts and tools in functional ecology.

Inferring Phylogenies

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Publisher : Sinauer Associates Incorporated
ISBN 13 : 9780878931774
Total Pages : 664 pages
Book Rating : 4.9/5 (317 download)

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Book Synopsis Inferring Phylogenies by : Joseph Felsenstein

Download or read book Inferring Phylogenies written by Joseph Felsenstein and published by Sinauer Associates Incorporated. This book was released on 2004-01 with total page 664 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenies, or evolutionary trees, are the basic structures necessary to think about and analyze differences between species. Statistical, computational, and algorithmic work in this field has been ongoing for four decades now, and there have been great advances in understanding. Yet no book has summarized this work. Inferring Phylogenies does just that in a single, compact volume. Phylogenies are inferred with various kinds of data. This book concentrates on some of the central ones: discretely coded characters, molecular sequences, gene frequencies, and quantitative traits. Also covered are restriction sites, RAPDs, and microsatellites.

Functional and Phylogenetic Ecology in R

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Publisher : Springer Science & Business Media
ISBN 13 : 1461495423
Total Pages : 217 pages
Book Rating : 4.4/5 (614 download)

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Book Synopsis Functional and Phylogenetic Ecology in R by : Nathan G. Swenson

Download or read book Functional and Phylogenetic Ecology in R written by Nathan G. Swenson and published by Springer Science & Business Media. This book was released on 2014-03-26 with total page 217 pages. Available in PDF, EPUB and Kindle. Book excerpt: Functional and Phylogenetic Ecology in R is designed to teach readers to use R for phylogenetic and functional trait analyses. Over the past decade, a dizzying array of tools and methods were generated to incorporate phylogenetic and functional information into traditional ecological analyses. Increasingly these tools are implemented in R, thus greatly expanding their impact. Researchers getting started in R can use this volume as a step-by-step entryway into phylogenetic and functional analyses for ecology in R. More advanced users will be able to use this volume as a quick reference to understand particular analyses. The volume begins with an introduction to the R environment and handling relevant data in R. Chapters then cover phylogenetic and functional metrics of biodiversity; null modeling and randomizations for phylogenetic and functional trait analyses; integrating phylogenetic and functional trait information; and interfacing the R environment with a popular C-based program. This book presents a unique approach through its focus on ecological analyses and not macroevolutionary analyses. The author provides his own code, so that the reader is guided through the computational steps to calculate the desired metrics. This guided approach simplifies the work of determining which package to use for any given analysis. Example datasets are shared to help readers practice, and readers can then quickly turn to their own datasets.

Tempo and Mode in Evolution

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Publisher :
ISBN 13 :
Total Pages : 256 pages
Book Rating : 4.:/5 (319 download)

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Book Synopsis Tempo and Mode in Evolution by : George Gaylord Simpson

Download or read book Tempo and Mode in Evolution written by George Gaylord Simpson and published by . This book was released on 1965 with total page 256 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Phylogenies in Ecology

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Publisher : Princeton University Press
ISBN 13 : 0691157685
Total Pages : 264 pages
Book Rating : 4.6/5 (911 download)

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Book Synopsis Phylogenies in Ecology by : Marc W. Cadotte

Download or read book Phylogenies in Ecology written by Marc W. Cadotte and published by Princeton University Press. This book was released on 2016-08-09 with total page 264 pages. Available in PDF, EPUB and Kindle. Book excerpt: Phylogenies in Ecology is the first book to critically review the application of phylogenetic methods in ecology, and it serves as a primer to working ecologists and students of ecology wishing to understand these methods. This book demonstrates how phylogenetic information is transforming ecology by offering fresh ways to estimate the similarities and differences among species, and by providing deeper, evolutionary-based insights on species distributions, coexistence, and niche partitioning. Marc Cadotte and Jonathan Davies examine this emerging area's explosive growth, allowing for this new body of hypotheses testing. Cadotte and Davies systematically look at all the main areas of current ecophylogenetic methodology, testing, and inference. Each chapter of their book covers a unique topic, emphasizes key assumptions, and introduces the appropriate statistical methods and null models required for testing phylogenetically informed hypotheses. The applications presented throughout are supported and connected by examples relying on real-world data that have been analyzed using the open-source programming language, R. Showing how phylogenetic methods are shedding light on fundamental ecological questions related to species coexistence, conservation, and global change, Phylogenies in Ecology will interest anyone who thinks that evolution might be important in their data.

Computational Molecular Evolution

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Publisher : Oxford University Press, USA
ISBN 13 : 0198566999
Total Pages : 374 pages
Book Rating : 4.1/5 (985 download)

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Book Synopsis Computational Molecular Evolution by : Ziheng Yang

Download or read book Computational Molecular Evolution written by Ziheng Yang and published by Oxford University Press, USA. This book was released on 2006-10-05 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes the models, methods and algorithms that are most useful for analysing the ever-increasing supply of molecular sequence data, with a view to furthering our understanding of the evolution of genes and genomes.

Biological Evolution and Statistical Physics

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Publisher :
ISBN 13 : 9783662143698
Total Pages : 356 pages
Book Rating : 4.1/5 (436 download)

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Book Synopsis Biological Evolution and Statistical Physics by : M. Lassig

Download or read book Biological Evolution and Statistical Physics written by M. Lassig and published by . This book was released on 2014-10-01 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt: