Phase Retrieval from Continuous and Discrete Ptychographic Measurements

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ISBN 13 : 9781392157947
Total Pages : 123 pages
Book Rating : 4.1/5 (579 download)

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Book Synopsis Phase Retrieval from Continuous and Discrete Ptychographic Measurements by : Sami Eid Merhi

Download or read book Phase Retrieval from Continuous and Discrete Ptychographic Measurements written by Sami Eid Merhi and published by . This book was released on 2019 with total page 123 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this dissertation, we present and study two novel approaches to phase retrieval -- an inverse problem in which one attempts to reconstruct a complex-valued function (or vector) from phaseless (or magnitude-only) measurements. Phase retrieval arises in several scientific areas including bio-chemistry, optics, astronomy, quantum mechanics, and speech signal processing. Early solutions to phase retrieval, although practical, lacked robustness guarantees. To this day, practitioners in scientific imaging are still seeking demonstrably stable and robust recovery algorithms. Ptychography is a form of coherent diffractive imaging where diffraction patterns are processed by algorithms to recover an image of a specimen. More specifically, small regions of a specimen are illuminated one-at-a-time, and a detector captures the intensities of the resulting diffraction patterns. As such, the measurements are local and phaseless. In this work, we present two algorithms to recover signals from ptychographic measurements. The first algorithm aims to recover a discrete one-dimensional signal from discrete spectrogram measurements via a modified Wigner distribution deconvolution (WDD) method. While the method is known to practitioners of scientific imaging, robustness and recovery guarantees are lacking, if not absent; our contribution is to supply such guarantees. The second algorithm aims to approximately recover a compactly supported function from continuous spectrogram measurements via lifting and angular synchronization. This setup can be interpreted as the infinite-dimensional equivalent of discrete ptychographic imaging. Our contribution is a model which assumes infinite-dimensional signals and measurements ab initio, as opposed to most recent algorithms in which discrete models are a necessity. Finally, we consider the worst-case noise robustness of any phase retrieval algorithm which aims to reconstruct all nonvanishing vectors from the magnitudes of an arbitrary collection of local correlation measurements. The robustness results provided therein apply to a wide range of ptychographic imaging scenarios. In particular, our contribution is to show that stable recovery of high-resolution images of extremely large samples is likely to require a vast number of measurements, independent of the recovery algorithm employed. The first chapter introduces the phase retrieval problem and presents historical context, as well as applications in which phase retrieval manifests. In addition, we introduce ptychography, discuss existing WDD formulations, and compare these to our contribution in the discrete setting. Chapter 2 provides recovery guarantees for using aliased WDD methods to solve the phase retrieval problem in a discrete setting with sub-sampled measurements. In Chapter 3 we provide lower Lipschitz bounds for generic phase retrieval algorithms from locally supported measurements. Finally, Chapter 4 presents a numerical method to recover compactly supported functions from local measurements via lifting and angular synchronization.

Phase Retrieval from Locally Supported Measurements

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ISBN 13 :
Total Pages : 231 pages
Book Rating : 4.:/5 (17 download)

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Book Synopsis Phase Retrieval from Locally Supported Measurements by : Brian Patrick Preskitt

Download or read book Phase Retrieval from Locally Supported Measurements written by Brian Patrick Preskitt and published by . This book was released on 2018 with total page 231 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this dissertation, we study a new approach to the problem of phase retrieval, which is the task of reconstructing a complex-valued signal from magnitude-only measurements. This problem occurs naturally in several specialized imaging applications such as electron microscopy and X-ray crystallography. Although solutions were first proposed for this problem as early as the 1970s, these algorithms have lacked theoretical guarantees of success, and phase retrieval has suffered from a considerable gap between practice and theory for almost the entire history of its study. A common technique in fields that use phase retrieval is that of ptychography, where measurements are collected by only illuminating small sections of the sample at any time. We refer to measurements designed in this way as local measurements, and in this dissertation, we develop and expand the theory for solving phase retrieval in measurement regimes of this kind. Our first contribution is a basic model for this setup in the case of a one-dimensional signal, along with an algorithm that robustly solves phase retrieval under this model. This work is unique in many ways that represent substantial improvements over previously existing solutions: perhaps most significantly, many of the recovery guarantees in recent work rely on the measurements being generated by a random process, while we devise a class of measurements for which the conditioning of the system is known and quickly checkable. These advantages constitute major progress towards producing theoretical results for phase retrieval that are directly usable in laboratory settings. Chapter 1 conducts a survey of the history of phase retrieval and its applications, as well as the recent literature on the subject. Chapter 2 presents co-authored results defining and establishing the setting and solution of the base model explored in this dissertation. Chapter 3 expands the theory on what measurement schemes are admissible in our model, including an analysis of conditioning and runtime. Chapter 4 introduces an alternate solution for angular synchronization that yields helpful theoretical results. Chapter 5 brings our model nearer to the actual practice of ptychography. Chapter 6 extends the base model to two dimensions.

Phase Retrieval from Short-Time Fourier Measurements and Applications to Ptychography

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ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (138 download)

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Book Synopsis Phase Retrieval from Short-Time Fourier Measurements and Applications to Ptychography by : Oleh Melnyk

Download or read book Phase Retrieval from Short-Time Fourier Measurements and Applications to Ptychography written by Oleh Melnyk and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Fourier Ptychographic Imaging

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Publisher : Morgan & Claypool Publishers
ISBN 13 : 168174273X
Total Pages : 94 pages
Book Rating : 4.6/5 (817 download)

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Book Synopsis Fourier Ptychographic Imaging by : Guoan Zheng

Download or read book Fourier Ptychographic Imaging written by Guoan Zheng and published by Morgan & Claypool Publishers. This book was released on 2016-06-30 with total page 94 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book demonstrates the concept of Fourier ptychography, a new imaging technique that bypasses the resolution limit of the employed optics. In particular, it transforms the general challenge of high-throughput, high-resolution imaging from one that is coupled to the physical limitations of the optics to one that is solvable through computation. Demonstrated in a tutorial form and providing many MATLAB® simulation examples for the reader, it also discusses the experimental implementation and recent developments of Fourier ptychography. This book will be of interest to researchers and engineers learning simulation techniques for Fourier optics and the Fourier ptychography concept.

Springer Handbook of Microscopy

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Publisher : Springer Nature
ISBN 13 : 3030000699
Total Pages : 1561 pages
Book Rating : 4.0/5 (3 download)

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Book Synopsis Springer Handbook of Microscopy by : Peter W. Hawkes

Download or read book Springer Handbook of Microscopy written by Peter W. Hawkes and published by Springer Nature. This book was released on 2019-11-02 with total page 1561 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book features reviews by leading experts on the methods and applications of modern forms of microscopy. The recent awards of Nobel Prizes awarded for super-resolution optical microscopy and cryo-electron microscopy have demonstrated the rich scientific opportunities for research in novel microscopies. Earlier Nobel Prizes for electron microscopy (the instrument itself and applications to biology), scanning probe microscopy and holography are a reminder of the central role of microscopy in modern science, from the study of nanostructures in materials science, physics and chemistry to structural biology. Separate chapters are devoted to confocal, fluorescent and related novel optical microscopies, coherent diffractive imaging, scanning probe microscopy, transmission electron microscopy in all its modes from aberration corrected and analytical to in-situ and time-resolved, low energy electron microscopy, photoelectron microscopy, cryo-electron microscopy in biology, and also ion microscopy. In addition to serving as an essential reference for researchers and teachers in the fields such as materials science, condensed matter physics, solid-state chemistry, structural biology and the molecular sciences generally, the Springer Handbook of Microscopy is a unified, coherent and pedagogically attractive text for advanced students who need an authoritative yet accessible guide to the science and practice of microscopy.

Investigating Ptychographic Phase Retrieval in Terms of Vibration Correction, Online Data Analysis, and Direct 3D Reconstuction

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ISBN 13 :
Total Pages : 0 pages
Book Rating : 4.:/5 (142 download)

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Book Synopsis Investigating Ptychographic Phase Retrieval in Terms of Vibration Correction, Online Data Analysis, and Direct 3D Reconstuction by : Silvio Achilles

Download or read book Investigating Ptychographic Phase Retrieval in Terms of Vibration Correction, Online Data Analysis, and Direct 3D Reconstuction written by Silvio Achilles and published by . This book was released on 2023 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Iterative Algorithms for Ptychographic Phase Retrieval

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (873 download)

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Book Synopsis Iterative Algorithms for Ptychographic Phase Retrieval by :

Download or read book Iterative Algorithms for Ptychographic Phase Retrieval written by and published by . This book was released on 2011 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Ptychography promises diffraction limited resolution without the need for high resolution lenses. To achieve high resolution one has to solve the phase problem for many partially overlapping frames. Here we review some of the existing methods for solving ptychographic phase retrieval problem from a numerical analysis point of view, and propose alternative methods based on numerical optimization.

The Phase Retrieval Problem

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (11 download)

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Book Synopsis The Phase Retrieval Problem by : David Aaron Barmherzig

Download or read book The Phase Retrieval Problem written by David Aaron Barmherzig and published by . This book was released on 2019 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: The phase retrieval problem is an inverse problem which consists of recovering a signal from a set of squared magnitude measurements. One version of this problem, often known as Fourier phase retrieval, arises ubiquitously in scientific imaging fields (such as diffraction imaging, crystallography, and optics, etc.) where one seeks to recover an image or signal from squared magnitude measurements of its Fourier transform. Another version, known as Gaussian phase retrieval, is manifested as the study of solving random systems of quadratic equations, and constitutes an important problem in the field of nonconvex optimization. The first part of this thesis introduces a general mathematical framework for the holographic phase retrieval problem. In this problem, which arises in holographic coherent diffraction imaging, a "reference" portion of the signal to be recovered via (Fourier) phase retrieval is a priori known from experimental design. A general formula is also derived for the expected recovery error when the measurement data is corrupted by Poisson shot noise. This facilitates an optimization perspective towards reference design and analysis, which is then employed towards quantifying the performance of various known reference choices. Based on insights gained from these results, a new "dual-reference" design is proposed which consists of two reference portions - being "block" and "pinhole" shaped regions - adjacent to the imaging specimen. Expected error analysis on data following a Poisson shot noise model shows that the dual-reference scheme produces uniformly superior performance over the leading single-reference schemes. Numerical experiments on simulated data corroborate these theoretical results, and demonstrate the advantage of the dual-reference design. Based on this work, a prototype experiment for holographic coherent diffraction imaging using a dual-reference has been designed at the SLAC National Accelerator Laboratory. The second part studies the one-dimensional Fourier phase retrieval problem, as well as the closely related spectral factorization problem. In its first chapter, a comprehensive exposition of the problem theory is provided. This includes a full characterization of its general nonuniqueness, as well as the special cases for which unique solutions exists. In the second chapter, a semidefinite programming formulation is derived for the Fourier phase retrieval problem. It is shown that this approach provides guaranteed recovery whenever there exists a unique phase retrieval solution. A correspondence is also established between solutions of the phase retrieval SDP, and sum-of-squares decompositions of Laurent and trigonometric polynomials. In the third chapter, a least-squares formulation is presented for the one-dimensional Fourier phase retrieval and spectral factorization problems. This formulation allows for the successful implementation of numerous first- and second-order optimization methods. In the third part, a biconvex formulation of the Gaussian phase retrieval problem is introduced. This allows for alternating-projection algorithms, such as ADMM and block coordinate descent, to be successfully applied to Gaussian phase retrieval. Both theoretical guarantees and numerical simulations demonstrate the success of these methods.

Nanoscale Photonic Imaging

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Publisher : Springer Nature
ISBN 13 : 3030344134
Total Pages : 634 pages
Book Rating : 4.0/5 (33 download)

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Book Synopsis Nanoscale Photonic Imaging by : Tim Salditt

Download or read book Nanoscale Photonic Imaging written by Tim Salditt and published by Springer Nature. This book was released on 2020-06-09 with total page 634 pages. Available in PDF, EPUB and Kindle. Book excerpt: This open access book, edited and authored by a team of world-leading researchers, provides a broad overview of advanced photonic methods for nanoscale visualization, as well as describing a range of fascinating in-depth studies. Introductory chapters cover the most relevant physics and basic methods that young researchers need to master in order to work effectively in the field of nanoscale photonic imaging, from physical first principles, to instrumentation, to mathematical foundations of imaging and data analysis. Subsequent chapters demonstrate how these cutting edge methods are applied to a variety of systems, including complex fluids and biomolecular systems, for visualizing their structure and dynamics, in space and on timescales extending over many orders of magnitude down to the femtosecond range. Progress in nanoscale photonic imaging in Göttingen has been the sum total of more than a decade of work by a wide range of scientists and mathematicians across disciplines, working together in a vibrant collaboration of a kind rarely matched. This volume presents the highlights of their research achievements and serves as a record of the unique and remarkable constellation of contributors, as well as looking ahead at the future prospects in this field. It will serve not only as a useful reference for experienced researchers but also as a valuable point of entry for newcomers.

Phase-retrieval Method and Applications

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ISBN 13 : 9789881730411
Total Pages : 184 pages
Book Rating : 4.7/5 (34 download)

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Book Synopsis Phase-retrieval Method and Applications by : Pui Sum Yuen

Download or read book Phase-retrieval Method and Applications written by Pui Sum Yuen and published by . This book was released on 2008 with total page 184 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Geometry of the Phase Retrieval Problem

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Publisher : Cambridge University Press
ISBN 13 : 1316518876
Total Pages : 321 pages
Book Rating : 4.3/5 (165 download)

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Book Synopsis Geometry of the Phase Retrieval Problem by : Alexander H. Barnett

Download or read book Geometry of the Phase Retrieval Problem written by Alexander H. Barnett and published by Cambridge University Press. This book was released on 2022-05-05 with total page 321 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book provides a theoretical foundation and conceptual framework for the problem of recovering the phase of the Fourier transform.

Transmission Electron Microscopy

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Publisher : Springer
ISBN 13 : 3319266519
Total Pages : 543 pages
Book Rating : 4.3/5 (192 download)

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Book Synopsis Transmission Electron Microscopy by : C. Barry Carter

Download or read book Transmission Electron Microscopy written by C. Barry Carter and published by Springer. This book was released on 2016-08-24 with total page 543 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text is a companion volume to Transmission Electron Microscopy: A Textbook for Materials Science by Williams and Carter. The aim is to extend the discussion of certain topics that are either rapidly changing at this time or that would benefit from more detailed discussion than space allowed in the primary text. World-renowned researchers have contributed chapters in their area of expertise, and the editors have carefully prepared these chapters to provide a uniform tone and treatment for this exciting material. The book features an unparalleled collection of color figures showcasing the quality and variety of chemical data that can be obtained from today’s instruments, as well as key pitfalls to avoid. As with the previous TEM text, each chapter contains two sets of questions, one for self assessment and a second more suitable for homework assignments. Throughout the book, the style follows that of Williams & Carter even when the subject matter becomes challenging—the aim is always to make the topic understandable by first-year graduate students and others who are working in the field of Materials Science Topics covered include sources, in-situ experiments, electron diffraction, Digital Micrograph, waves and holography, focal-series reconstruction and direct methods, STEM and tomography, energy-filtered TEM (EFTEM) imaging, and spectrum imaging. The range and depth of material makes this companion volume essential reading for the budding microscopist and a key reference for practicing researchers using these and related techniques.

Wave Optical Simulations of X-ray Nano-focusing Optics

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Publisher : Universitätsverlag Göttingen
ISBN 13 : 3863950542
Total Pages : 167 pages
Book Rating : 4.8/5 (639 download)

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Book Synopsis Wave Optical Simulations of X-ray Nano-focusing Optics by : Markus Osterhoff

Download or read book Wave Optical Simulations of X-ray Nano-focusing Optics written by Markus Osterhoff and published by Universitätsverlag Göttingen. This book was released on 2012 with total page 167 pages. Available in PDF, EPUB and Kindle. Book excerpt: Curved x-ray multilayer mirrors focus synchrotron beams down to tens of nano metres. A wave-optical theory describing propagation of two waves in an elliptically curved focusing multilayer mirror is developed in this thesis. Using numerical integration, the layer shapes can be optimised for reflectivity and aberrations. Within this framework, performance of both existing and currently upgraded synchrotron beamlines is simulated. Using a more theoretical model case, limits of the theory are studied. A significant part of this work is dedicated to partial spatial coherence, modelled using the method of stochastic superpositions. Coherence propagation and filtering by x-ray waveguides is shown analytically and numerically. This comprehensive model is put forward that shall help in development and testing of new algorithms for a variety of imaging techniques using coherent x-ray beams. Advanced simulations accounting for real structure effects are compared to experimental data obtained at the GINIX instrument at the coherence beamline P10 at PETRA III, DESY. This thesis presents results of a collaboration between the Georg-August-Universität Göttingen and the European Synchrotron Radiation Facility (ESRF) Grenoble.

Solution of the Phase Problem. I. The Centrosystemmetric Crystal

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ISBN 13 :
Total Pages : 428 pages
Book Rating : 4.:/5 (319 download)

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Book Synopsis Solution of the Phase Problem. I. The Centrosystemmetric Crystal by : Herbert Aaron Hauptman

Download or read book Solution of the Phase Problem. I. The Centrosystemmetric Crystal written by Herbert Aaron Hauptman and published by . This book was released on 1953 with total page 428 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Fourier Analysis and Applications

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Publisher : Springer Science & Business Media
ISBN 13 : 1461215986
Total Pages : 434 pages
Book Rating : 4.4/5 (612 download)

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Book Synopsis Fourier Analysis and Applications by : Claude Gasquet

Download or read book Fourier Analysis and Applications written by Claude Gasquet and published by Springer Science & Business Media. This book was released on 2013-12-01 with total page 434 pages. Available in PDF, EPUB and Kindle. Book excerpt: The object of this book is two-fold -- on the one hand it conveys to mathematical readers a rigorous presentation and exploration of the important applications of analysis leading to numerical calculations. On the other hand, it presents physics readers with a body of theory in which the well-known formulae find their justification. The basic study of fundamental notions, such as Lebesgue integration and theory of distribution, allow the establishment of the following areas: Fourier analysis and convolution Filters and signal analysis time-frequency analysis (gabor transforms and wavelets). The whole is rounded off with a large number of exercises as well as selected worked-out solutions.

Image Recovery: Theory and Application

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Publisher : Elsevier
ISBN 13 : 0323145973
Total Pages : 565 pages
Book Rating : 4.3/5 (231 download)

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Book Synopsis Image Recovery: Theory and Application by : Henry Stark

Download or read book Image Recovery: Theory and Application written by Henry Stark and published by Elsevier. This book was released on 2013-04-25 with total page 565 pages. Available in PDF, EPUB and Kindle. Book excerpt: Image Recovery: Theory and Application focuses on signal recovery and synthesis problems. This book discusses the concepts of image recovery, including regularization, the projection theorem, and the pseudoinverse operator. Comprised of 13 chapters, this volume begins with a review of the basic properties of linear vector spaces and associated operators, followed by a discussion on the Gerchberg-Papoulis algorithm. It then explores image restoration and the basic mathematical theory in image restoration problems. The reader is also introduced to the problem of obtaining artifact-free computed tomographic reconstruction. Other chapters consider the importance of Bayesian approach in the context of medical imaging. In addition, the book discusses the linear programming method, which is particularly important for images with large number of pixels with zero value. Such images are usually found in medical imaging, microscopy, electron microscopy, and astronomy. This book can be a valuable resource to materials scientists, engineers, computed tomography technologists, and astronomers.

ARPACK Users' Guide

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Publisher : SIAM
ISBN 13 : 0898714079
Total Pages : 150 pages
Book Rating : 4.8/5 (987 download)

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Book Synopsis ARPACK Users' Guide by : Richard B. Lehoucq

Download or read book ARPACK Users' Guide written by Richard B. Lehoucq and published by SIAM. This book was released on 1998-01-01 with total page 150 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a guide to understanding and using the software package ARPACK to solve large algebraic eigenvalue problems. The software described is based on the implicitly restarted Arnoldi method, which has been heralded as one of the three most important advances in large scale eigenanalysis in the past ten years. The book explains the acquisition, installation, capabilities, and detailed use of the software for computing a desired subset of the eigenvalues and eigenvectors of large (sparse) standard or generalized eigenproblems. It also discusses the underlying theory and algorithmic background at a level that is accessible to the general practitioner.