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Perl Programming For Biologists
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Book Synopsis Perl Programming for Biologists by : D. Curtis Jamison
Download or read book Perl Programming for Biologists written by D. Curtis Jamison and published by John Wiley & Sons. This book was released on 2003-07-14 with total page 206 pages. Available in PDF, EPUB and Kindle. Book excerpt: Working on the assumption that the reader has no formal training in programming, Perl Programming for Biologists demonstrates how Perl is used to solve biological problems. Each chapter opens with a set of learning objectives, provides numerous review questions and self-study exercises, and concludes with a bulleted summary of key points. The author incorporates numerous real-life examples throughout the text. Upon completing the book, readers are able to quickly perform such tasks as correcting recurring errors in spreadsheets, scanning a Fasta sequence for every occurrence of an EcoRI site, adapting other writers' scripts to one's own purposes, and most important, writing reusable and maintainable scripts that spare the rote repetition of code.
Book Synopsis Beginning Perl for Bioinformatics by : James Tisdall
Download or read book Beginning Perl for Bioinformatics written by James Tisdall and published by "O'Reilly Media, Inc.". This book was released on 2001-10-22 with total page 388 pages. Available in PDF, EPUB and Kindle. Book excerpt: With its highly developed capacity to detect patterns in data, Perl has become one of the most popular languages for biological data analysis. But if you're a biologist with little or no programming experience, starting out in Perl can be a challenge. Many biologists have a difficult time learning how to apply the language to bioinformatics. The most popular Perl programming books are often too theoretical and too focused on computer science for a non-programming biologist who needs to solve very specific problems.Beginning Perl for Bioinformatics is designed to get you quickly over the Perl language barrier by approaching programming as an important new laboratory skill, revealing Perl programs and techniques that are immediately useful in the lab. Each chapter focuses on solving a particular bioinformatics problem or class of problems, starting with the simplest and increasing in complexity as the book progresses. Each chapter includes programming exercises and teaches bioinformatics by showing and modifying programs that deal with various kinds of practical biological problems. By the end of the book you'll have a solid understanding of Perl basics, a collection of programs for such tasks as parsing BLAST and GenBank, and the skills to take on more advanced bioinformatics programming. Some of the later chapters focus in greater detail on specific bioinformatics topics. This book is suitable for use as a classroom textbook, for self-study, and as a reference.The book covers: Programming basics and working with DNA sequences and strings Debugging your code Simulating gene mutations using random number generators Regular expressions and finding motifs in data Arrays, hashes, and relational databases Regular expressions and restriction maps Using Perl to parse PDB records, annotations in GenBank, and BLAST output
Book Synopsis Perl Programming for Medicine and Biology by : Jules J. Berman
Download or read book Perl Programming for Medicine and Biology written by Jules J. Berman and published by Jones & Bartlett Learning. This book was released on 2007 with total page 428 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written for biomedical professionals and hospital practitioners interested in creating their own programs, Perl Programming for Medicine and Biology, discusses and reviews biomedical data resources, data standards, data organization, medicolegal and ethical conduct for data miners, and grants-related data sharing responsibilities. It teaches readers the basic Perl programming skills necessary for collecting, analyzing, and distributing biomedical data and provides solutions to in-depth problems that face researchers and healthcare professionals. Non-technical "Background" sections open each chapter to help non-programmers easily comprehend programming procedures. Explanations are provided for the biomedical issues underlying the Perl scripts that follow, and examples of real-world implementation are provided. Perl Programming for Medicine and Biology will show you how to transform, merge, and examine large and complex databases with ease.
Book Synopsis Mastering Perl for Bioinformatics by : James Tisdall
Download or read book Mastering Perl for Bioinformatics written by James Tisdall and published by "O'Reilly Media, Inc.". This book was released on 2003-09-25 with total page 399 pages. Available in PDF, EPUB and Kindle. Book excerpt: Historically, programming hasn't been considered a critical skill for biologists. But now, with access to vast amounts of biological data contained in public databases, programming skills are increasingly in strong demand in biology research and development. Perl, with its highly developed capacities in string handling, text processing, networking, and rapid prototyping, has emerged as the programming language of choice for biological data analysis.Mastering Perl for Bioinformatics covers the core Perl language and many of its module extensions, presenting them in the context of biological data and problems of pressing interest to the biological community. This book, along with Beginning Perl for Bioinformatics, forms a basic course in Perl programming. This second volume finishes the basic Perl tutorial material (references, complex data structures, object-oriented programming, use of modules--all presented in a biological context) and presents some advanced topics of considerable interest in bioinformatics.The range of topics covered in Mastering Perl for Bioinformatics prepares the reader for enduring and emerging developments in critical areas of bioinformatics programming such as: Gene finding String alignment Methods of data storage and retrieval (SML and databases) Modeling of networks (graphs and Petri nets) Graphics (Tk) Parallelization Interfacing with other programming languages Statistics (PDL) Protein structure determination Biological models of computation (DNA Computers) Biologists and computer scientists who have conquered the basics of Perl and are ready to move even further in their mastery of this versatile language will appreciate the author's well-balanced approach to applying Perl's analytical abilities to the field of bioinformatics. Full of practical examples and real-world biological problem solving, this book is a must for any reader wanting to move beyond beginner level Perl in bioinformatics.
Book Synopsis UNIX and Perl to the Rescue! by : Keith Bradnam
Download or read book UNIX and Perl to the Rescue! written by Keith Bradnam and published by Cambridge University Press. This book was released on 2012-07-19 with total page 429 pages. Available in PDF, EPUB and Kindle. Book excerpt: Your research has generated gigabytes of data and now you need to analyse it. You hate using spreadsheets but it is all you know, so what else can you do? This book will transform how you work with large and complex data sets, teaching you powerful programming tools for slicing and dicing data to suit your needs. Written in a fun and accessible style, this step-by-step guide will inspire and inform non-programmers about the essential aspects of Unix and Perl. It shows how, with just a little programming knowledge, you can write programs that could save you hours, or even days. No prior experience is required and new concepts are introduced using numerous code examples that you can try out for yourself. Going beyond the basics, the authors touch upon many broader topics that will help those new to programming, including debugging and how to write in a good programming style.
Book Synopsis The programming language "Perl" for Biologists by : Asheesh Shanker
Download or read book The programming language "Perl" for Biologists written by Asheesh Shanker and published by GRIN Verlag. This book was released on 2015-03-02 with total page 181 pages. Available in PDF, EPUB and Kindle. Book excerpt: Document from the year 2015 in the subject Computer Science - Programming, , course: Bioinformatics, language: English, abstract: This book is designed to be useful in theory and practical classes of UG and PG bioinformatics students. Moreover, it will be beneficial to other persons who wish to learn Perl programming language. To explain the Perl jargon, program based approach is used throughout the book. Important points are provided at the end of each chapter along with questions to test the skills. Solutions of find errors are provided at the end of the book. All the programs are tested on Windows 7 with Perl v5.18.1. The book is divided into thirteen chapters which gradually take a reader from basic to advanced Perl. Although the book has been drafted with utmost care, it is quite possible that some errors/misprints might have crept in the book. I request the readers for their valuable suggestions and comments for further improvement of the book.
Book Synopsis Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R by : Gabriel Valiente
Download or read book Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R written by Gabriel Valiente and published by CRC Press. This book was released on 2009-04-08 with total page 368 pages. Available in PDF, EPUB and Kindle. Book excerpt: Emphasizing the search for patterns within and between biological sequences, trees, and graphs, Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R shows how combinatorial pattern matching algorithms can solve computational biology problems that arise in the analysis of genomic, transcriptomic, proteomic, metabolomic, and interactomic data. It implements the algorithms in Perl and R, two widely used scripting languages in computational biology. The book provides a well-rounded explanation of traditional issues as well as an up-to-date account of more recent developments, such as graph similarity and search. It is organized around the specific algorithmic problems that arise when dealing with structures that are commonly found in computational biology, including biological sequences, trees, and graphs. For each of these structures, the author makes a clear distinction between problems that arise in the analysis of one structure and in the comparative analysis of two or more structures. He also presents phylogenetic trees and networks as examples of trees and graphs in computational biology. This book supplies a comprehensive view of the whole field of combinatorial pattern matching from a computational biology perspective. Along with thorough discussions of each biological problem, it includes detailed algorithmic solutions in pseudo-code, full Perl and R implementation, and pointers to other software, such as those on CPAN and CRAN.
Book Synopsis Computational Biology by : Röbbe Wünschiers
Download or read book Computational Biology written by Röbbe Wünschiers and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt: -Teaches the reader how to use Unix, which is the key to basic computing and allows the most flexibility for bioinformatics applications -Written specifically with the needs of molecular biologists in mind -Easy to follow, written for beginners with no computational knowledge -Includes examples from biological data analysis -Can be use either for self-teaching or in courses
Book Synopsis Computer Science & Perl Programming by : Jon Orwant
Download or read book Computer Science & Perl Programming written by Jon Orwant and published by "O'Reilly Media, Inc.". This book was released on 2002-11-04 with total page 766 pages. Available in PDF, EPUB and Kindle. Book excerpt: These are the best and most timeless articles printed in "The Perl Journal." Topics include networking, software development, coding style, internals, and others.
Book Synopsis Perl for Exploring DNA by : Mark D. LeBlanc
Download or read book Perl for Exploring DNA written by Mark D. LeBlanc and published by Oxford University Press, USA. This book was released on 2007 with total page 296 pages. Available in PDF, EPUB and Kindle. Book excerpt: Publisher description
Book Synopsis Methods in Medical Informatics by : Jules J. Berman
Download or read book Methods in Medical Informatics written by Jules J. Berman and published by CRC Press. This book was released on 2010-09-22 with total page 413 pages. Available in PDF, EPUB and Kindle. Book excerpt: Too often, healthcare workers are led to believe that medical informatics is a complex field that can only be mastered by teams of professional programmers. This is simply not the case. With just a few dozen simple algorithms, easily implemented with open source programming languages, you can fully utilize the medical information contained in clini
Book Synopsis Developing Bioinformatics Computer Skills by : Cynthia Gibas
Download or read book Developing Bioinformatics Computer Skills written by Cynthia Gibas and published by "O'Reilly Media, Inc.". This book was released on 2001 with total page 452 pages. Available in PDF, EPUB and Kindle. Book excerpt: This practical, hands-on guide shows how to develop a structured approach to biological data and the tools needed to analyze it. It's aimed at scientists and students learning computational approaches to biological data, as well as experienced biology researchers starting to use computers to handle data.
Book Synopsis Integer Linear Programming in Computational and Systems Biology by : Dan Gusfield
Download or read book Integer Linear Programming in Computational and Systems Biology written by Dan Gusfield and published by Cambridge University Press. This book was released on 2019-06-13 with total page 431 pages. Available in PDF, EPUB and Kindle. Book excerpt: This hands-on tutorial text for non-experts demonstrates biological applications of a versatile modeling and optimization technique.
Download or read book Learning Perl written by Randal Schwartz and published by "O'Reilly Media, Inc.". This book was released on 2011-06-23 with total page 389 pages. Available in PDF, EPUB and Kindle. Book excerpt: The sixth edition of this bestselling Perl tutorial includes recent changes to the language. Years of classroom testing and experience helped shape the book's pace and scope, and this edition is packed with exercises that let readers practice the concepts while they follow the text.
Download or read book Genomic Perl written by Rex A. Dwyer and published by Cambridge University Press. This book was released on 2003 with total page 360 pages. Available in PDF, EPUB and Kindle. Book excerpt: This introduction to computational molecular biology will help programmers and biologists learn the skills needed to start work in this important, expanding field. The author explains many of the basic computational problems and gives concise, working programs to solve them in the Perl programming language. With minimal prerequisites, the author explains the biological background for each problem, develops a model for the solution, then introduces the Perl concepts needed to implement the solution. The book covers pairwise and multiple sequence alignment, fast database searches for homologous sequences, protein motif identification, genome rearrangement, physical mapping, phylogeny reconstruction, satellite identification, sequence assembly, gene finding, and RNA secondary structure. The concrete examples and step-by-step approach make it easy to grasp the computational and statistical methods, including dynamic programming, branch-and-bound optimization, greedy methods, maximum likelihood methods, substitution matrices, BLAST searching, and Karlin-Altschul statistics. Perl code is provided on the accompanying CD.
Book Synopsis Python for Biologists by : Martin Jones
Download or read book Python for Biologists written by Martin Jones and published by Createspace Independent Publishing Platform. This book was released on 2013 with total page 248 pages. Available in PDF, EPUB and Kindle. Book excerpt: Python for biologists is a complete programming course for beginners that will give you the skills you need to tackle common biological and bioinformatics problems.
Download or read book Perl written by Jules Berman and published by Jones & Bartlett Learning. This book was released on 2008-05-13 with total page 57 pages. Available in PDF, EPUB and Kindle. Book excerpt: A perfect companion to Computer Science Illuminated or Concepts in Computing, as well as an excellent primer, Perl: The Programming Language offers a clear introduction to this practical language. Perl has been known to be the all-purpose tool in programming and system administration. This overview describes the fundamentals of this efficient open-source programming system. Beginning programmers will be relieved this dynamic language is not only easy to learn but easy to implement as well.
