Organohalide Respiration: New Findings in Metabolic Mechanisms and Bioremediation Applications

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Publisher : Frontiers Media SA
ISBN 13 : 2889458482
Total Pages : 190 pages
Book Rating : 4.8/5 (894 download)

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Book Synopsis Organohalide Respiration: New Findings in Metabolic Mechanisms and Bioremediation Applications by : Shanquan Wang

Download or read book Organohalide Respiration: New Findings in Metabolic Mechanisms and Bioremediation Applications written by Shanquan Wang and published by Frontiers Media SA. This book was released on 2019-05-21 with total page 190 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microbial reductive dehalogenation mediated by organohalide-respiring bacteria plays a critical role in the natural halogen cycle, representing a promising solution for removal of organohalide pollutants. This Research Topic presents many of the more recent advances that have been made in this area. Authors from leading research groups contributed to this eBook, and provided mechanistic insights into organohalide respiration, as well as their bioremediation implications, at molecular, cellular, community and system levels.

Genomic Adaptation for Organohalide Respiration of Vinyl Chloride and Other Priority Pollutants by the Anaerobic Bacterium Dehalococcoides

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Publisher : Stanford University
ISBN 13 :
Total Pages : 174 pages
Book Rating : 4.F/5 ( download)

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Book Synopsis Genomic Adaptation for Organohalide Respiration of Vinyl Chloride and Other Priority Pollutants by the Anaerobic Bacterium Dehalococcoides by : Paul Joseph McMurdie (II.)

Download or read book Genomic Adaptation for Organohalide Respiration of Vinyl Chloride and Other Priority Pollutants by the Anaerobic Bacterium Dehalococcoides written by Paul Joseph McMurdie (II.) and published by Stanford University. This book was released on 2011 with total page 174 pages. Available in PDF, EPUB and Kindle. Book excerpt: Vinyl chloride (VC) is a widespread groundwater pollutant and Group 1 carcinogen. Microbial respiration of VC is both critical for complete remediation of chloroethenes in situ, and a unique physiology only observed by certain strains of Dehalococcoides. Two different genes independently encoding VC respiration in Dehalococcoides, vcrA and bvcA, were identified previously, each a member of the diverse family of reductive dehalogenase homologous genes, or rdhA. In this thesis I report that vcrA and bvcA are among a subset of putative 'foreign' rdhA with a low GC3 codon usage that favors the nucleotide T, even though tRNAs recognizing T-ending codons are categorically absent in Dehalococcoides genomes. Comparative genomics of the first two complete genome sequences of microorganisms able to respire VC, Dehalococcoides strains VS and BAV1, reveals that vcrA and bvcA are both located within recently integrated, but different, genomic islands (GIs). These islands have different predicted integration sites and different relative positions in the genome, suggesting that bvcA and vcrA were acquired independently and through different mechanisms. In particular, the vcrA-containing GI appears to have integrated at the single-copy tmRNA encoding gene, ssrA, along with many other homologous elements that site-specifically integrate/excise at ssrA -- some of which contain other rdhA. A detailed analysis of these 'ssrA-GIs' in Dehalococcoides identifies the precise position of insertion as well as a conserved module of syntenic integration-associated genes that includes the likely ssrA-specific integrase. Further analysis of (meta)genomic data, as well as targeted sequencing from 4 additional VC-respiring cultures, provided a total of 8 syntenic vcr-GIs from independently derived cultures. Evolutionary estimates for the age of divergence of these 8 vcrA sequences is not confidently distinguishable from the first industrial synthesis of chlorinated ethenes approximately 100 years ago. By contrast, the estimated age of divergence of Dehalococcoides strains far precedes industrial civilization. Overall, ssrA-GIs appear to be a major contributor to the second of two high plasticity regions, genetically dynamic regions that interrupt an otherwise stable, syntenic, and streamlined Dehalococcoides genome -- among the smallest of any free living microorganism. The apparent compartmentalization of Dehalococcoides genome dynamics within specialized regions may enhance opportunistic adaptation to (new) organohalide respiratory niches while protecting a core genome that is highly adapted to life in the anoxic subsurface, exemplified here by the recent site-specific acquisition of VC reductase genes.

Organohalide-Respiring Bacteria

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Publisher : Springer
ISBN 13 : 3662498758
Total Pages : 632 pages
Book Rating : 4.6/5 (624 download)

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Book Synopsis Organohalide-Respiring Bacteria by : Lorenz Adrian

Download or read book Organohalide-Respiring Bacteria written by Lorenz Adrian and published by Springer. This book was released on 2016-08-03 with total page 632 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book summarizes the current state of knowledge concerning bacteria that use halogenated organic compounds as respiratory electron acceptors. The discovery of organohalide-respiring bacteria has expanded the range of electron acceptors used for energy conservation, and serves as a prime example of how scientific discoveries are enabling innovative engineering solutions that have transformed remediation practice. Individual chapters provide in-depth background information on the discovery, isolation, phylogeny, biochemistry, genomic features, and ecology of individual organohalide-respiring genera, including Dehalococcoides, Dehalogenimonas, Dehalobacter, Desulfitobacterium and Sulfurospirillum, as well as organohalide-respiring members of the Deltaproteobacteria. The book introduces readers to the fascinating biology of organohalide-respiring bacteria, offering a valuable resource for students, engineers and practitioners alike.

Advances in Microbial Physiology

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Publisher : Academic Press
ISBN 13 : 0128177136
Total Pages : 528 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Advances in Microbial Physiology by :

Download or read book Advances in Microbial Physiology written by and published by Academic Press. This book was released on 2019-05-22 with total page 528 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in Microbial Physiology, Volume 74, the latest release in this ongoing series, continues the long tradition of topical, important, cutting-edge reviews in microbiology. The book contains updates in the field, with comprehensive chapters covering The electrifying physiology of Geobacter bacteria 30 years on, Adaptive morphogenesis in bacteria, Bacterial energetics and respiratory metabolism, Bacteria respiration during infection, Regulation of Organohalide Respiration, Bioenergetics of Campylobacter jejuni, Formate Hydrogenlyases, Bioenergetical Aspects of the Bacterial and Archaeal Hydrogen Metabolism, and more. Contains contributions from leading authorities in microbial physiology Informs and updates on all the latest developments in the field of microbial physiology

Novel Insights into Algal Biology and Biotechnology

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Publisher : Frontiers Media SA
ISBN 13 : 2889458679
Total Pages : 190 pages
Book Rating : 4.8/5 (894 download)

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Book Synopsis Novel Insights into Algal Biology and Biotechnology by : Yuval Kaye

Download or read book Novel Insights into Algal Biology and Biotechnology written by Yuval Kaye and published by Frontiers Media SA. This book was released on 2019-05-23 with total page 190 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Organohalide Respiration

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Publisher :
ISBN 13 : 9781782520078
Total Pages : pages
Book Rating : 4.5/5 (2 download)

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Book Synopsis Organohalide Respiration by : David Leys

Download or read book Organohalide Respiration written by David Leys and published by . This book was released on 2013 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:

Microbial Ecotoxicology

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Publisher : Frontiers Media SA
ISBN 13 : 2889638812
Total Pages : 569 pages
Book Rating : 4.8/5 (896 download)

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Book Synopsis Microbial Ecotoxicology by : Stéphane Pesce

Download or read book Microbial Ecotoxicology written by Stéphane Pesce and published by Frontiers Media SA. This book was released on 2020-07-17 with total page 569 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Industrial Biotechnology

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Publisher : CRC Press
ISBN 13 : 1315342375
Total Pages : 277 pages
Book Rating : 4.3/5 (153 download)

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Book Synopsis Industrial Biotechnology by : Devarajan Thangadurai

Download or read book Industrial Biotechnology written by Devarajan Thangadurai and published by CRC Press. This book was released on 2017-03-03 with total page 277 pages. Available in PDF, EPUB and Kindle. Book excerpt: This important new book covers recent advancements, innovations, and technologies in industrial biotechnology, specifically addressing the application of various biomolecules in industrial production and in cleaning and environmental remediation sectors. The goal of industrial biotechnology is to develop new techniques and technologies to transform renewable raw materials into chemicals, materials, and fuels by the substitution of fossil fuels. With the increase in the world’s population and the resultant growing energy demand, the need for more energy can be successfully met with the advancements in industrial biotechnology. Currently across the globe significant research has been undertaken in the production of cleaner fuels, materials, and semi-synthetic chemicals, with environmental benefits. Developing countries have huge agricultural resources that could be utilized for production of value-added byproducts for the sustainable development of bio-based economy. The book opens with the chapter on the production of exopolysaccharides from halophilic microorganisms, a polymer that is normally very useful in various production sectors of the food, pharmaceutical, and petroleum industries. The book goes on to cover: The production of antimicrobial compounds from alkaliphilic bacteria Thermophilic actinomycetes Food, agro, and pharmaceutical potential and biotechnological applications of biosurfactants, halophiles, cyclodextrin glycosyl transferease, fungal chitinase, proteases, yeasts and yeast products Also covered in the book are the environmental aspects of industrial biotechnology such as the genetic enhancement for biofuel production, the production of biodegradable thermoplastics, advancements in the synthesis of bio-oil, ecofriendly treatment of agro-based lignocelluloses, and anaerobic bio reactors for hydrocarbon remediation. The international roster of chapter authors have been chosen for their renowned expertise and contribution to the various fields of industrial biotechnology. This book is suitable to chemists, biotechnologists from research institutes, academia, and students as well as for industry professionals

Principles and Applications of Soil Microbiology

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Publisher : Elsevier
ISBN 13 : 0323851401
Total Pages : 744 pages
Book Rating : 4.3/5 (238 download)

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Book Synopsis Principles and Applications of Soil Microbiology by : Terry Gentry

Download or read book Principles and Applications of Soil Microbiology written by Terry Gentry and published by Elsevier. This book was released on 2021-06-06 with total page 744 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written by leading experts in their respective fields, Principles and Applications of Soil Microbiology 3e, provides a comprehensive, balanced introduction to soil microbiology, and captures the rapid advances in the field such as recent discoveries regarding habitats and organisms, microbially mediated transformations, and applied environmental topics. Carefully edited for ease of reading, it aids users by providing an excellent multi-authored reference, the type of book that is continually used in the field. Background information is provided in the first part of the book for ease of comprehension. The following chapters then describe such fundamental topics as soil environment and microbial processes, microbial groups and their interactions, and thoroughly addresses critical nutrient cycles and important environmental and agricultural applications. An excellent textbook and desk reference, Principles and Applications of Soil Microbiology, 3e, provides readers with broad, foundational coverage of the vast array of microorganisms that live in soil and the major biogeochemical processes they control. Soil scientists, environmental scientists, and others, including soil health and conservation specialists, will find this material invaluable for understanding the amazingly diverse world of soil microbiology, managing agricultural and environmental systems, and formulating environmental policy. Includes discussion of major microbial methods, embedded within topical chapters Includes information boxes and case studies throughout the text to illustrate major concepts and connect fundamental knowledge with potential applications Study questions at the end of each chapter allow readers to evaluate their understanding of the materials

Handbook of Bioremediation

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Publisher : Academic Press
ISBN 13 : 0128193832
Total Pages : 766 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Handbook of Bioremediation by : Mirza Hasanuzzaman

Download or read book Handbook of Bioremediation written by Mirza Hasanuzzaman and published by Academic Press. This book was released on 2020-10-18 with total page 766 pages. Available in PDF, EPUB and Kindle. Book excerpt: Handbook of Bioremediation: Physiological, Molecular and Biotechnological Interventions discusses the mechanisms of responding to inorganic and organic pollutants in the environment using different approaches of phytoremediation and bioremediation. Part One focuses specifically on inorganic pollutants and the use of techniques such as metallothionein-assisted remediation, phytoextraction and genetic manipulation. Part Two covers organic pollutants and consider topics such as plant enzymes, antioxidant defense systems and the remediation mechanisms of different plant species. This comprehensive volume is a must-read for researchers interested in plant science, agriculture, soil science and environmental science. The techniques covered in this book will ensure scientists have the knowledge to practice effective bioremediation techniques themselves. Provides a comprehensive review of the latest advances in bioremediation of organic and inorganic pollutants Discusses a range of different phytoremediation techniques Evaluates the role of genomics and bioinformatics within bioremediation

Groundwater Ecology and Evolution

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Publisher : Elsevier
ISBN 13 : 0128191201
Total Pages : 642 pages
Book Rating : 4.1/5 (281 download)

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Book Synopsis Groundwater Ecology and Evolution by : Florian Malard

Download or read book Groundwater Ecology and Evolution written by Florian Malard and published by Elsevier. This book was released on 2023-03-11 with total page 642 pages. Available in PDF, EPUB and Kindle. Book excerpt: Groundwater Ecology and Evolution, Second Edition is designed to meet a multitude of audience needs. The state of the art in the discipline is provided by the articulation of six sections. The first three sections successively carry the reader into the basic attributes of groundwater ecosystems (section 1), the drivers and patterns of biodiversity (section 2), and the roles of organisms in groundwater ecosystems (section 3). The next two sections are devoted to evolutionary processes driving the acquisition of subterranean biological traits (section 4) and the way these traits are differently expressed among groundwater organisms (section 5). Finally, section 6 shows how knowledge acquired among multiple research fields (sections 1 to 5) is used to manage groundwater biodiversity and ecosystem services in the face of future groundwater resource use scenarios. Emphasis on the coherence and prospects of the whole book is given in the introduction and conclusion. Provides a modern synthesis of research dedicated to the study of groundwater biodiversity and ecosystems Bridges the gap between community ecology, evolution, and functional ecology, three research fields that have long been presented isolated from each other Explains how this trans-disciplinary integration of research contributes to understanding and managing of groundwater ecosystem functions Reveals the contribution of groundwater ecology and evolution in solving scientific questions well beyond the frontiers of groundwater systems

Biodegradative Bacteria

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Publisher : Springer Science & Business Media
ISBN 13 : 4431545204
Total Pages : 354 pages
Book Rating : 4.4/5 (315 download)

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Book Synopsis Biodegradative Bacteria by : Hideaki Nojiri

Download or read book Biodegradative Bacteria written by Hideaki Nojiri and published by Springer Science & Business Media. This book was released on 2013-11-01 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biodegradative Bacteria highlights the novel nature of bacterial cell functions in the field of biodegradation by putting them into three parts: (1) Genetic and genomic systems, (2) Degradative enzyme systems, and (3) Bacterial behavior in natural environmental systems. The first part of the book includes cell functions as degradative machinery, genome systems for effective degradation, and the evolution of degradative systems by mobile genetic elements. The second part deals with the structure, function, evolution, diversity, and application of degradative and related enzymes. The third part presents cell or genomic behaviors of biodegradative bacteria in natural ecosystems. Bacterial metabolic capacity, which plays an important role in the global material cycle, contributes significantly to the buffering capacity for the huge and unintended release of various chemicals. Recently, however, the prosperity and globalization of material civilization has led not only to severe local contamination by hazardous chemicals, but also to continuous increment of contaminant concentrations worldwide. To solve such urgent global issues, bacterial functions that are involved in biodegradation of hazardous chemicals have been analyzed. The term “biodegradative bacteria” refers to those bacteria that have the ability to degrade such xenobiotic (man-made) and/or hazardous chemicals. Analyses of biodegradative bacteria include diverse areas of study, such as genetics, enzymology, genomics, cell physiology, ecology, and evolutionary biology. In other words, the targets investigated in research on biodegradative bacteria include single molecules, single cell systems, bacterial consortia (interaction with surrounding microorganisms), and interaction with surrounding biotic and abiotic materials. Such complexity makes the research on biodegradative bacteria difficult but quite interesting.

Water Security: Big Data-Driven Risk Identification, Assessment and Control of Emerging Contaminants

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Publisher : Elsevier
ISBN 13 : 0443141711
Total Pages : 671 pages
Book Rating : 4.4/5 (431 download)

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Book Synopsis Water Security: Big Data-Driven Risk Identification, Assessment and Control of Emerging Contaminants by : Bin Liang

Download or read book Water Security: Big Data-Driven Risk Identification, Assessment and Control of Emerging Contaminants written by Bin Liang and published by Elsevier. This book was released on 2024-06-28 with total page 671 pages. Available in PDF, EPUB and Kindle. Book excerpt: Water Security: Big Data-Driven Risk Identification, Assessment and Control of Emerging Contaminants contains the latest information on big data–driven risk detection and analysis, risk assessment and environmental health effect, intelligent risk control technologies, and global control strategy of emerging contaminants. First, this book highlights advances and challenges throughout the detection of emerging chemical contaminants (e.g., antimicrobials, microplastics) by sensors or mass spectrometry, as well as emerging biological contaminant (e.g., ARGs, pathogens) by a combination of next- and third-generation sequencing technologies in aquatic environment. Second, it discusses in depth the ecological risk assessment and environmental health effects of emerging contaminants. Lastly, it presents the most up-to-date intelligent risk management technologies. This book shares instrumental global strategy and policy analysis on how to control emerging contaminants. Offering interdisciplinary and global perspectives from experts in environmental sciences and engineering, environmental microbiology and microbiome, environmental informatics and bioinformatics, intelligent systems, and knowledge engineering, this book provides an accessible and flexible resource for researchers and upper level students working in these fields. Covers the detection, high-throughput analyses, and environmental behavior of the typical emerging chemical and biological contaminants Focuses on chemical and biological big data driven aquatic ecological risk assessment models and techniques Highlights the intelligent management and control technologies and policies for emerging contaminants in water environments

Prokaryotic Metabolism and Physiology

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Publisher : Cambridge University Press
ISBN 13 : 1107171733
Total Pages : 509 pages
Book Rating : 4.1/5 (71 download)

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Book Synopsis Prokaryotic Metabolism and Physiology by : Byung Hong Kim

Download or read book Prokaryotic Metabolism and Physiology written by Byung Hong Kim and published by Cambridge University Press. This book was released on 2019-05-16 with total page 509 pages. Available in PDF, EPUB and Kindle. Book excerpt: Extensive and up-to-date review of key metabolic processes in bacteria and archaea and how metabolism is regulated under various conditions.

Coenzyme B12 Enzymes Part A

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Publisher : Academic Press
ISBN 13 : 0323915922
Total Pages : 392 pages
Book Rating : 4.3/5 (239 download)

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Book Synopsis Coenzyme B12 Enzymes Part A by :

Download or read book Coenzyme B12 Enzymes Part A written by and published by Academic Press. This book was released on 2022-05-17 with total page 392 pages. Available in PDF, EPUB and Kindle. Book excerpt: B12 Enzyme, Volume 667 in the Methods in Enzymology serial, highlights new advances in the field with this new volume presenting timely, interesting chapters, including Part I: B12 Biosynthesis and B12 Chaperones, Probing the preference and regioselectivity of lower ligand activation and its role in cobamide diversity, Biosynthesis of corrinoids, The human B12 trafficking chaperones: CblC, CblD and ATR, A method for the efficient adenosylation of corrinoids, Production, purification and liposome reconstitution of cobamide synthase, Extraction and Purification of Cobamides from Bacterial Cultures, Part II: The many faces of B12-dependent enzyme reactions, Methylcobalamin-dependent methionine synthase, and much more. Provides the authority and expertise of leading contributors from an international board of authors Presents the latest release in Methods in Enzymology serials Includes the latest information on B12 Enzymes

Naturally Occurring Organohalogen Compounds

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Publisher : Springer Nature
ISBN 13 : 3031266293
Total Pages : 553 pages
Book Rating : 4.0/5 (312 download)

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Book Synopsis Naturally Occurring Organohalogen Compounds by : A. Douglas Kinghorn

Download or read book Naturally Occurring Organohalogen Compounds written by A. Douglas Kinghorn and published by Springer Nature. This book was released on 2023-07-24 with total page 553 pages. Available in PDF, EPUB and Kindle. Book excerpt: The present volume is the third in a trilogy that documents naturally occurring organohalogen compounds, bringing the total number — from fewer than 25 in 1968 — to approximately 8,000 compounds to date. Nearly all of these natural products contain chlorine or bromine, with a few containing iodine and, fewer still, fluorine. Produced by ubiquitous marine (algae, sponges, corals, bryozoa, nudibranchs, fungi, bacteria) and terrestrial organisms (plants, fungi, bacteria, insects, higher animals) and universal abiotic processes (volcanos, forest fires, geothermal events), organohalogens pervade the global ecosystem. Newly identified extraterrestrial sources are also documented. In addition to chemical structures, biological activity, biohalogenation, biodegradation, natural function, and future outlook are presented.

Microbial Hydrogen Metabolism

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Publisher : Frontiers Media SA
ISBN 13 : 2889635406
Total Pages : 146 pages
Book Rating : 4.8/5 (896 download)

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Book Synopsis Microbial Hydrogen Metabolism by : Chris Greening

Download or read book Microbial Hydrogen Metabolism written by Chris Greening and published by Frontiers Media SA. This book was released on 2020-02-20 with total page 146 pages. Available in PDF, EPUB and Kindle. Book excerpt: