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Book Synopsis On Optimality and Efficiency of Parallel Magnetic Resonance Imaging Reconstruction by : Roger Nana
Download or read book On Optimality and Efficiency of Parallel Magnetic Resonance Imaging Reconstruction written by Roger Nana and published by . This book was released on 2008 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Imaging speed is an important issue in magnetic resonance imaging (MRI), as subject motion during image acquisition is liable to produce artifacts in the image. However, the speed at which data can be collected in conventional MRI is fundamentally limited by physical and physiological constraints. Parallel MRI is a technique that utilizes multiple receiver coils to increase the imaging speed beyond previous limits by reducing the amount of acquired data without degrading the image quality. In order to remove the image aliasing due to k-space undersampling, parallel MRI reconstructions invert the encoding matrix that describes the net effect of the magnetic field gradient encoding and the coil sensitivity profiles. The accuracy, stability, and efficiency of a matrix inversion strategy largely dictate the quality of the reconstructed image. This thesis addresses five specific issues pertaining to this linear inverse problem with practical solutions to improve clinical and research applications.
Book Synopsis Regularized Image Reconstruction in Parallel MRI with MATLAB by : Joseph Suresh Paul
Download or read book Regularized Image Reconstruction in Parallel MRI with MATLAB written by Joseph Suresh Paul and published by CRC Press. This book was released on 2019-11-05 with total page 306 pages. Available in PDF, EPUB and Kindle. Book excerpt: Regularization becomes an integral part of the reconstruction process in accelerated parallel magnetic resonance imaging (pMRI) due to the need for utilizing the most discriminative information in the form of parsimonious models to generate high quality images with reduced noise and artifacts. Apart from providing a detailed overview and implementation details of various pMRI reconstruction methods, Regularized image reconstruction in parallel MRI with MATLAB examples interprets regularized image reconstruction in pMRI as a means to effectively control the balance between two specific types of error signals to either improve the accuracy in estimation of missing samples, or speed up the estimation process. The first type corresponds to the modeling error between acquired and their estimated values. The second type arises due to the perturbation of k-space values in autocalibration methods or sparse approximation in the compressed sensing based reconstruction model. Features: Provides details for optimizing regularization parameters in each type of reconstruction. Presents comparison of regularization approaches for each type of pMRI reconstruction. Includes discussion of case studies using clinically acquired data. MATLAB codes are provided for each reconstruction type. Contains method-wise description of adapting regularization to optimize speed and accuracy. This book serves as a reference material for researchers and students involved in development of pMRI reconstruction methods. Industry practitioners concerned with how to apply regularization in pMRI reconstruction will find this book most useful.
Download or read book MRI written by Angshul Majumdar and published by CRC Press. This book was released on 2018-09-03 with total page 222 pages. Available in PDF, EPUB and Kindle. Book excerpt: The field of magnetic resonance imaging (MRI) has developed rapidly over the past decade, benefiting greatly from the newly developed framework of compressed sensing and its ability to drastically reduce MRI scan times. MRI: Physics, Image Reconstruction, and Analysis presents the latest research in MRI technology, emphasizing compressed sensing-based image reconstruction techniques. The book begins with a succinct introduction to the principles of MRI and then: Discusses the technology and applications of T1rho MRI Details the recovery of highly sampled functional MRIs Explains sparsity-based techniques for quantitative MRIs Describes multi-coil parallel MRI reconstruction techniques Examines off-line techniques in dynamic MRI reconstruction Explores advances in brain connectivity analysis using diffusion and functional MRIs Featuring chapters authored by field experts, MRI: Physics, Image Reconstruction, and Analysis delivers an authoritative and cutting-edge treatment of MRI reconstruction techniques. The book provides engineers, physicists, and graduate students with a comprehensive look at the state of the art of MRI.
Book Synopsis Improvement in High Acceleration Parallel Magnetic Resonance Imaging Using Efficient Graph-based Energy Minimization Methods by : Gurmeet Singh
Download or read book Improvement in High Acceleration Parallel Magnetic Resonance Imaging Using Efficient Graph-based Energy Minimization Methods written by Gurmeet Singh and published by . This book was released on 2008 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Magnetic Resonance Image Reconstruction by : Mehmet Akcakaya
Download or read book Magnetic Resonance Image Reconstruction written by Mehmet Akcakaya and published by Academic Press. This book was released on 2022-11-04 with total page 518 pages. Available in PDF, EPUB and Kindle. Book excerpt: Magnetic Resonance Image Reconstruction: Theory, Methods and Applications presents the fundamental concepts of MR image reconstruction, including its formulation as an inverse problem, as well as the most common models and optimization methods for reconstructing MR images. The book discusses approaches for specific applications such as non-Cartesian imaging, under sampled reconstruction, motion correction, dynamic imaging and quantitative MRI. This unique resource is suitable for physicists, engineers, technologists and clinicians with an interest in medical image reconstruction and MRI. Explains the underlying principles of MRI reconstruction, along with the latest research“/li> Gives example codes for some of the methods presented Includes updates on the latest developments, including compressed sensing, tensor-based reconstruction and machine learning based reconstruction
Book Synopsis Parallelism, Patterns, and Performance in Iterative MRI Reconstruction by : Mark Murphy
Download or read book Parallelism, Patterns, and Performance in Iterative MRI Reconstruction written by Mark Murphy and published by . This book was released on 2011 with total page 250 pages. Available in PDF, EPUB and Kindle. Book excerpt: Magnetic Resonance Imaging (MRI) is a non-invasive and highly flexible medical imaging modality that does not expose patients ionizing radiation. MR Image acquisitions can be designed by varying a large number of contrast-generation parameters, and many clinical diagnostic applications exist. However, imaging speed is a fundamental limitation to many potential applications. Traditionally, MRI data have been collected at Nyquist sampling rates to produce alias-free images. However, many recent scan acceleration techniques produce sub-Nyquist samplings. For example, Parallel Imaging is a well-established acceleration technique that receives the MR signal simultaneously from multiple receive channels. Compressed sensing leverages randomized undersampling and the compressibility (e.g. via Wavelet transforms or Total-Variation) of medical images to allow more aggressive undersampling. Reconstruction of clinically viable images from these highly accelerated acquisitions requires powerful, usually iterative algorithms. Non-Cartesian pulse sequences that perform non-equispaced sampling of k-space further increase computational intensity of reconstruction, as they preclude direct use of the Fast Fourier Transform (FFT). Most iterative algorithms can be understood by considering the MRI reconstruction as an inverse problem, where measurements of un-observable parameters are made via an observation function that models the acquisition process. Traditional direct reconstruction methods attempt to invert this observation function, whereas iterative methods require its repeated computation and computation of its adjoint. As a result, na\"ive sequential implementations of iterative reconstructions produce unfeasibly long runtimes. Their computational intensity is a substantial barrier to their adoption in clinical MRI practice. A powerful new family of massively parallel microprocessor architectures has emerged simultaneously with the development of these new reconstruction techniques. Due to fundamental limitations in silicon fabrication technology, sequential microprocessors reached the power-dissipation limits of commodity cooling systems in the early 2000's. The techniques used by processor architects to extract instruction-level parallelism from sequential programs face ever-diminishing returns, and further performance improvement of sequential processors via increasing clock-frequency has become impractical. However, circuit density and process feature sizes still improve at Moore's Law rates. With every generation of silicon fabrication technology, a larger number of transistors are available to system architects. Consequently, all microprocessor vendors now exclusively produce multi-core parallel processors. Additionally, the move towards on-chip parallelism has allowed processor architects a larger degree of freedom in the design of multi-threaded pipelines and memory hierarchies. Many of the inefficiencies inherent in superscalar out-of-order design are being replaced by the high efficiency afforded by throughput-oriented designs. The move towards on-chip parallelism has resulted in a vast increase in the amount of computational power available in commodity systems. However, this move has also shifted the burden of computational performance towards software developers. In particular, the highly efficient implementation of MRI reconstructions on these systems requires manual parallelization and optimization. Thus, while ubiquitous parallelism provides a solution to the computational intensity of iterative MRI reconstructions, it also poses a substantial software productivity challenge. In this thesis, we propose that a principled approach to the design and implementation of reconstruction algorithms can ameliorate this software productivity issue. We draw much inspiration from developments in the field of computational science, which has faced similar parallelization and software development challenges for several decades. We propose a Software Architecture for the implementation of reconstruction algorithms, which composes two Design Patterns that originated in the domain of massively parallel scientific computing. This architecture allows for the most computationally intense operations performed by MRI reconstructions to be implemented as re-usable libraries. Thus the software development effort required to produce highly efficient and heavily optimized implementations of these operations can be amortized over many different reconstruction systems. Additionally, the architecture prescribes several different strategies for mapping reconstruction algorithms onto parallel processors, easing the burden of parallelization. We describe the implementation of a complete reconstruction, $\ell_1$-SPIRiT, according to these strategies. $\ell_1$-SPIRiT is a general reconstruction framework that seamlessly integrates all three of the scan acceleration techniques mentioned above. Our implementation achieves substantial performance improvement over baseline, and has enabled substantial clinical evaluation of its approach to combining Parallel Imaging and Compressive Sensing. Additionally, we include an in-depth description of the performance optimization of the non-uniform Fast Fourier Transform (nuFFT), an operation used in all non-Cartesian reconstructions. This discussion complements well our description of $\ell_1$-SPIRiT, which we have only implemented for Cartesian samplings.
Book Synopsis Advances in Parallel Imaging Reconstruction Techniques by : Peng Qu
Download or read book Advances in Parallel Imaging Reconstruction Techniques written by Peng Qu and published by . This book was released on 2017-01-27 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: This dissertation, "Advances in Parallel Imaging Reconstruction Techniques" by Peng, Qu, 瞿蓬, was obtained from The University of Hong Kong (Pokfulam, Hong Kong) and is being sold pursuant to Creative Commons: Attribution 3.0 Hong Kong License. The content of this dissertation has not been altered in any way. We have altered the formatting in order to facilitate the ease of printing and reading of the dissertation. All rights not granted by the above license are retained by the author. Abstract: Abstract of thesis entitled Advances in Parallel Imaging Reconstruction Techniques submitted by Qu Peng for the degree of Doctor of Philosophy at The University of Hong Kong in February 2006 In recent years, a new approach to magnetic resonance imaging (MRI), known as "parallel imaging," has revolutionized the field of fast MRI. By using sensitivity information from an RF coil array to perform some of the spatial encoding which is traditionally accomplished by magnetic field gradient, parallel imaging techniques allow reduction of phase encoding steps and consequently decrease the scan time. This thesis presents the author''s investigations in the reconstruction techniques of parallel MRI. After reviewing the conventional methods, such as the image-domain-based sensitivity encoding (SENSE), the k-space-based simultaneous acquisition of spatial harmonics (SMASH), generalized auto-calibrating partially parallel acquisition (GRAPPA), and the iterative SENSE method which is applicable to arbitrary k-space trajectories, the author proposes several advanced reconstruction strategies to enhance the performance of parallel imaging in terms of signal-to-noise (SNR), the power of aliasing artifacts, and computational efficiency. First, the conventional GRAPPA technique is extended in that the data interpolation scheme is tailored and optimized for each specific reconstruction. This novel approach extracts a subset of signal points corresponding to the most linearly independent base vectors in the coefficient matrix for the fit procedure, effectively preventing incorporating redundant signals which only bring noise into reconstruction with little contribution to the exactness of fit. Phantom and in vivo MRI experiments demonstrate that this subset selection strategy can reduce residual artifacts for GRAPPA reconstruction. Second, a novel discrepancy-based method for regularization parameter choice is introduced into GRAPPA reconstruction. By this strategy, adaptive regularization in GRAPPA can be realized which can automatically choose nearly optimal parameters for the reconstructions so as to achieve good compromise between SNR and artifacts. It is demonstrated by MRI experiments that the discrepancy-based parameter choice strategy significantly outperforms those based on the L-curve or on a fixed singular value threshold. Third, the convergence behavior of the iterative non-Cartesian SENSE reconstruction is analyzed, and two different strategies are proposed to make reconstructions more stable and robust. One idea is to stop the iteration process in due time so that artifacts and SNR are well balanced and fine overall image quality is achieved; as an alternative, the inner-regularization method, in combination with the Lanczos iteration process, is introduced into non-Cartesian SENSE to mitigate the ill-conditioning effect and improve the convergence behavior. Finally, a novel multi-resolution successive iteration (MRSI) algorithm for non-Cartesian parallel imaging is proposed. The conjugate gradient (CG) iteration is performed in several successive phases with increasing resolution. It is demonstrated by spiral MRI results that the total reconstruction time can be reduced by over 30% by using low resolution in initial stages of iteration. In sum, the author describes several developments in image reconstruction for sensitivity-encoded MRI. The great potential of parallel imaging in modern applications can be further enh
Book Synopsis Regularized Image Reconstruction in Parallel MRI with MATLAB by : Joseph Suresh Paul
Download or read book Regularized Image Reconstruction in Parallel MRI with MATLAB written by Joseph Suresh Paul and published by CRC Press. This book was released on 2019-11-05 with total page 271 pages. Available in PDF, EPUB and Kindle. Book excerpt: Regularization becomes an integral part of the reconstruction process in accelerated parallel magnetic resonance imaging (pMRI) due to the need for utilizing the most discriminative information in the form of parsimonious models to generate high quality images with reduced noise and artifacts. Apart from providing a detailed overview and implementation details of various pMRI reconstruction methods, Regularized image reconstruction in parallel MRI with MATLAB examples interprets regularized image reconstruction in pMRI as a means to effectively control the balance between two specific types of error signals to either improve the accuracy in estimation of missing samples, or speed up the estimation process. The first type corresponds to the modeling error between acquired and their estimated values. The second type arises due to the perturbation of k-space values in autocalibration methods or sparse approximation in the compressed sensing based reconstruction model. Features: Provides details for optimizing regularization parameters in each type of reconstruction. Presents comparison of regularization approaches for each type of pMRI reconstruction. Includes discussion of case studies using clinically acquired data. MATLAB codes are provided for each reconstruction type. Contains method-wise description of adapting regularization to optimize speed and accuracy. This book serves as a reference material for researchers and students involved in development of pMRI reconstruction methods. Industry practitioners concerned with how to apply regularization in pMRI reconstruction will find this book most useful.
Book Synopsis Magnetic Resonance Imaging with Nonlinear Gradient Fields by : Gerrit Schultz
Download or read book Magnetic Resonance Imaging with Nonlinear Gradient Fields written by Gerrit Schultz and published by Springer Science & Business Media. This book was released on 2013-04-04 with total page 343 pages. Available in PDF, EPUB and Kindle. Book excerpt: Within the past few decades MRI has become one of the most important imaging modalities in medicine. For a reliable diagnosis of pathologies further technological improvements are of primary importance. This study deals with a radically new approach of image encoding. Gradient linearity has ever since been an unquestioned technological design criterion. With the advent of parallel imaging, this approach may be questioned, making way of much a more flexible gradient hardware that uses encoding fields with an arbitrary geometry. The theoretical basis of this new imaging modality – PatLoc imaging – are comprehensively presented, suitable image reconstruction algorithms are developed for a variety of imaging sequences and imaging results – including in vivo data – are explored based on novel hardware designs.
Book Synopsis Parallel Magnetic Resonance Imaging by : Swati Rane
Download or read book Parallel Magnetic Resonance Imaging written by Swati Rane and published by VDM Publishing. This book was released on 2008-01 with total page 72 pages. Available in PDF, EPUB and Kindle. Book excerpt: Parallel Magnetic Resonance Imaging has had a significant impact in rapid and real time MR imaging. With multiple images captured within a fraction of a second, this method has facilitated real time cardiac imaging and intra operative imaging with ease. This method uses an array of coils with extremely localized sensitivities, thereby reducing the effective field of view that is unique to every coil element. Subsequent sub-sampling of the k space data obtained from each coil therefore results in a set of aliased images. Parallel imaging reconstruction then involves the restoration of the desired image by spatial re-arrangement of the aliased data in the image domain or by estimation of the full k space data with the help of the coil sensitivity profiles. Different reconstruction techniques have been proposed to regenerate the complete alias-free image. The reconstruction greatly depends on the coil sensitivity profiles and k space subsampling schemes. The results vary considerably according to the reconstruction method adopted. This work briefly describes the most popular image reconstruction techniques used in the field and provides a detailed analysis for the selection of the optimal method of image reconstruction based on various parallel imaging parameters and popular image quality markers such as SNR and artifact power.
Book Synopsis Parallel Imaging in Clinical MR Applications by : Stefan O. Schönberg
Download or read book Parallel Imaging in Clinical MR Applications written by Stefan O. Schönberg and published by Springer Science & Business Media. This book was released on 2007-01-11 with total page 548 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents the first in-depth introduction to parallel imaging techniques and, in particular, to the application of parallel imaging in clinical MRI. It will provide readers with a broader understanding of the fundamental principles of parallel imaging and of the advantages and disadvantages of specific MR protocols in clinical applications in all parts of the body at 1.5 and 3 Tesla.
Book Synopsis Compressed Sensing Magnetic Resonance Image Reconstruction Algorithms by : Bhabesh Deka
Download or read book Compressed Sensing Magnetic Resonance Image Reconstruction Algorithms written by Bhabesh Deka and published by Springer. This book was released on 2018-12-29 with total page 122 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book presents a comprehensive review of the recent developments in fast L1-norm regularization-based compressed sensing (CS) magnetic resonance image reconstruction algorithms. Compressed sensing magnetic resonance imaging (CS-MRI) is able to reduce the scan time of MRI considerably as it is possible to reconstruct MR images from only a few measurements in the k-space; far below the requirements of the Nyquist sampling rate. L1-norm-based regularization problems can be solved efficiently using the state-of-the-art convex optimization techniques, which in general outperform the greedy techniques in terms of quality of reconstructions. Recently, fast convex optimization based reconstruction algorithms have been developed which are also able to achieve the benchmarks for the use of CS-MRI in clinical practice. This book enables graduate students, researchers, and medical practitioners working in the field of medical image processing, particularly in MRI to understand the need for the CS in MRI, and thereby how it could revolutionize the soft tissue imaging to benefit healthcare technology without making major changes in the existing scanner hardware. It would be particularly useful for researchers who have just entered into the exciting field of CS-MRI and would like to quickly go through the developments to date without diving into the detailed mathematical analysis. Finally, it also discusses recent trends and future research directions for implementation of CS-MRI in clinical practice, particularly in Bio- and Neuro-informatics applications.
Book Synopsis Nonlinear Reconstruction Methods for Parallel Magnetic Resonance Imaging by : Martin Uecker
Download or read book Nonlinear Reconstruction Methods for Parallel Magnetic Resonance Imaging written by Martin Uecker and published by . This book was released on 2009 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis New Reconstruction and Correction Methods for Parallel Magnetic Resonance Imaging by : Alexei Samsonov
Download or read book New Reconstruction and Correction Methods for Parallel Magnetic Resonance Imaging written by Alexei Samsonov and published by . This book was released on 2004 with total page 270 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Parallel MRI written by Hammad Omer and published by . This book was released on 2012 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Magnetic Resonance Imaging (MRI) is a non-ionising imaging modality which can provide excellent soft-tissue contrast because of a large number of flexible contrast parameters. One major limitation of MRI is its long acquisition time. Parallel MRI provides a framework to reduce the scan time. The aim of this thesis is to investigate and develop new methods to improve the performance of Parallel MRI. A new GUI (Graphical User Interface) based platform is developed using Matlab which provides an interactive environment to apply different Parallel MRI algorithms as well as helps to analyse the results. Regularization based reconstruction in Parallel MRI utilizes some prior information about the image to achieve better reconstruction results. The use of regularization in Parallel MRI is investigated and a new algorithm is proposed which uses wavelet-denoising of the coil sensitivity estimates before applying SENSE (a Parallel MRI algorithm). The results show that the proposed method is computationally efficient and offers a good alternative to regularization for lower acceleration factors (AF) in Parallel MRI. A good choice of the regularization parameter in regularization based Parallel MRI reconstructions plays a pivotal role to have good results. A new algorithm to choose the regularization parameter efficiently has been developed. This method uses the g-Factor (noise amplification parameter in Parallel MRI) as a regularization parameter and provides better reconstruction results than the contemporary methods. The proposed algorithm improves the computational efficiency of regularization based reconstructions in Parallel MRI. The use of Parallel MRI in interventional imaging can greatly reduce the time required for imaging. A novel catheter based phased array coil, composed of two independent coil elements has been developed. This phased array receiver coil can implement Parallel MRI. Some initial imaging experiments using this coil system have been performed and the results show a successful implementation of Parallel MRI on the acquired data.
Book Synopsis Development and Application of Efficient Strategies for Parallel Magnetic Resonance Imaging by : Felix Breuer
Download or read book Development and Application of Efficient Strategies for Parallel Magnetic Resonance Imaging written by Felix Breuer and published by . This book was released on 2006 with total page 105 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Improved Image Reconstruction Methods for Parallel Magnetic Resonance Imaging by : Kaiyu Zheng
Download or read book Improved Image Reconstruction Methods for Parallel Magnetic Resonance Imaging written by Kaiyu Zheng and published by . This book was released on 2010 with total page 212 pages. Available in PDF, EPUB and Kindle. Book excerpt:
