Lateral Gene Transfer In Evolution

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Encyclopedia of Astrobiology

Author : Ricardo Amils
Publisher : Springer
ISBN 13 : 9783642278334
Total Pages : 1853 pages
Book Rating : 4.2/5 (783 download)

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Book Synopsis Encyclopedia of Astrobiology by : Ricardo Amils

Download or read book Encyclopedia of Astrobiology written by Ricardo Amils and published by Springer. This book was released on 2021-01-14 with total page 1853 pages. Available in PDF, EPUB and Kindle. Book excerpt: The interdisciplinary field of Astrobiology constitutes a joint arena where provocative discoveries are coalescing concerning, e.g. the prevalence of exoplanets, the diversity and hardiness of life, and its increasingly likely chances for its emergence. Biologists, astrophysicists, biochemists, geoscientists and space scientists share this exciting mission of revealing the origin and commonality of life in the Universe. The members of the different disciplines are used to their own terminology and technical language. In the interdisciplinary environment many terms either have redundant meanings or are completely unfamiliar to members of other disciplines. The Encyclopedia of Astrobiology serves as the key to a common understanding. Each new or experienced researcher and graduate student in adjacent fields of astrobiology will appreciate this reference work in the quest to understand the big picture. The carefully selected group of active researchers contributing to this work and the expert field editors intend for their contributions, from an internationally comprehensive perspective, to accelerate the interdisciplinary advance of astrobiology.

Lateral Gene Transfer in Evolution

Author : Uri Gophna
Publisher : Springer Science & Business Media
ISBN 13 : 1461477808
Total Pages : 294 pages
Book Rating : 4.4/5 (614 download)

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Book Synopsis Lateral Gene Transfer in Evolution by : Uri Gophna

Download or read book Lateral Gene Transfer in Evolution written by Uri Gophna and published by Springer Science & Business Media. This book was released on 2013-07-20 with total page 294 pages. Available in PDF, EPUB and Kindle. Book excerpt: Although the phenomenon of lateral gene transfer has been known since the 1940's, it was the genomics era that has really revealed the extent and many facets of this evolutionary/genetic phenomenon. Even in the early 2000s with but a handful of genomes available it became clear that the nature of microorganisms is full of genetic exchange between lineages that are sometimes far apart. The years following this saw an explosion of genomic data, which shook the "tree of life" and also raised doubts about the most appropriate species concepts for prokaryotes. This book attempts to represent the many-fold contributions of LGT to the evolution of micro and, to an extent, macro-organisms by focusing on the areas where the Editor felt it had the largest impact: metabolic innovations and adaptations and speciation.

Lateral DNA Transfer

Author : Frederic Bushman
Publisher : CSHL Press
ISBN 13 : 9780879696214
Total Pages : 472 pages
Book Rating : 4.6/5 (962 download)

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Book Synopsis Lateral DNA Transfer by : Frederic Bushman

Download or read book Lateral DNA Transfer written by Frederic Bushman and published by CSHL Press. This book was released on 2002 with total page 472 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is about mobile genesâ€”the transfer of DNA between unrelated cells. It discusses the machinery of gene transfer and its wide-ranging biological and health consequences. Mobile DNA makes possible the development of antibiotic resistance in microbes, the conversion of harmless to pathogenic bacteria, and the triggering of cancerous growth in cells. It also contributes to human evolution. This well-illustrated volume contains an up-to-date account of a topic now seen as increasingly important, and will be invaluable for both working scientists and as a textbook for advanced courses.

The Tangled Tree

Author : David Quammen
Publisher : Simon & Schuster
ISBN 13 : 1476776636
Total Pages : 480 pages
Book Rating : 4.4/5 (767 download)

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Book Synopsis The Tangled Tree by : David Quammen

Download or read book The Tangled Tree written by David Quammen and published by Simon & Schuster. This book was released on 2019-08-06 with total page 480 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this New York Times bestseller and longlist nominee for the National Book Award, “our greatest living chronicler of the natural world” (The New York Times), David Quammen explains how recent discoveries in molecular biology affect our understanding of evolution and life’s history. In the mid-1970s, scientists began using DNA sequences to reexamine the history of all life. Perhaps the most startling discovery to come out of this new field—the study of life’s diversity and relatedness at the molecular level—is horizontal gene transfer (HGT), or the movement of genes across species lines. It turns out that HGT has been widespread and important; we now know that roughly eight percent of the human genome arrived sideways by viral infection—a type of HGT. In The Tangled Tree, “the grandest tale in biology….David Quammen presents the science—and the scientists involved—with patience, candor, and flair” (Nature). We learn about the major players, such as Carl Woese, the most important little-known biologist of the twentieth century; Lynn Margulis, the notorious maverick whose wild ideas about “mosaic” creatures proved to be true; and Tsutomu Wantanabe, who discovered that the scourge of antibiotic-resistant bacteria is a direct result of horizontal gene transfer, bringing the deep study of genome histories to bear on a global crisis in public health. “David Quammen proves to be an immensely well-informed guide to a complex story” (The Wall Street Journal). In The Tangled Tree, he explains how molecular studies of evolution have brought startling recognitions about the tangled tree of life—including where we humans fit upon it. Thanks to new technologies, we now have the ability to alter even our genetic composition—through sideways insertions, as nature has long been doing. “The Tangled Tree is a source of wonder….Quammen has written a deep and daring intellectual adventure” (The Boston Globe).

Horizontal Gene Transfer

Author : Michael Syvanen
Publisher : Academic Press
ISBN 13 : 9780080534121
Total Pages : 445 pages
Book Rating : 4.5/5 (341 download)

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Book Synopsis Horizontal Gene Transfer by : Michael Syvanen

Download or read book Horizontal Gene Transfer written by Michael Syvanen and published by Academic Press. This book was released on 2001-12-19 with total page 445 pages. Available in PDF, EPUB and Kindle. Book excerpt: The second edition of Horizontal Gene Transfer has been organized to provide a concise and up-to-date coverage of the most important discoveries in this fascinating field. Written by the most prominent gene transfer and genome analytical scientists, this book details experimental evidence for the phenomenon of horizontal gene transfer and discusses further evidence provided by the recent completion of genomic sequences from Archea, Bacteria, and Eucarya members. The relevance of horizontal gene transfer to plant and metazoan taxonomy, GM foods, antibiotic resistance, paleontology, and phylogenetic reconstruction is also explored. Horizontal Gene Transfer is essential for microbiologists, geneticists, biochemists, evolutionary biologists, infectious disease specialists, paleontologists, ecologists, and researchers working in plant/animal systematics and agriculture with an interest in gene transfer. This includes scientific researchers from government and industry concerned with the release of genetically modified organisms. Up-to-the-minute reviews, maps, conclusions, urls to relevant websites and colour figures Unique chapters, for example one written by paleontologists presents data for horizontal gene transfer from fingerprints form the fossil record

Reticulate Evolution

Author : Nathalie Gontier
Publisher : Springer
ISBN 13 : 3319163450
Total Pages : 337 pages
Book Rating : 4.3/5 (191 download)

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Book Synopsis Reticulate Evolution by : Nathalie Gontier

Download or read book Reticulate Evolution written by Nathalie Gontier and published by Springer. This book was released on 2015-07-09 with total page 337 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written for non-experts, this volume introduces the mechanisms that underlie reticulate evolution. Chapters are either accompanied with glossaries that explain new terminology or timelines that position pioneering scholars and their major discoveries in their historical contexts. The contributing authors outline the history and original context of discovery of symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infectious heredity. By applying key insights from the areas of molecular (phylo)genetics, microbiology, virology, ecology, systematics, immunology, epidemiology and computational science, they demonstrate how reticulate evolution impacts successful survival, fitness and speciation. Reticulate evolution brings forth a challenge to the standard Neo-Darwinian framework, which defines life as the outcome of bifurcation and ramification patterns brought forth by the vertical mechanism of natural selection. Reticulate evolution puts forward a pattern in the tree of life that is characterized by horizontal mergings and lineage crossings induced by symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infective heredity, making the “tree of life” look more like a “web of life.” On an epistemological level, the various means by which hereditary material can be transferred horizontally challenges our classic notions of units and levels of evolution, fitness, modes of transmission, linearity, communities and biological individuality. The case studies presented examine topics including the origin of the eukaryotic cell and its organelles through symbiogenesis; the origin of algae through primary and secondary symbiosis and dinoflagellates through tertiary symbiosis; the superorganism and holobiont as units of evolution; how endosymbiosis induces speciation in multicellular life forms; transferrable and non-transferrable plasmids and how they symbiotically interact with their host; the means by which pro- and eukaryotic organisms transfer genes laterally (bacterial transformation, transduction and conjugation as well as transposons and other mobile genetic elements); hybridization and divergence with gene flow in sexually-reproducing individuals; current (human) microbiome and viriome studies that impact our knowledge concerning the evolution of organismal health and acquired immunity; and how symbiosis and symbiogenesis can be modelled in computational evolution.

Horizontal Gene Transfer

Author : Maria Boekels Gogarten
Publisher : Humana Press
ISBN 13 : 9781603278676
Total Pages : 552 pages
Book Rating : 4.2/5 (786 download)

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Book Synopsis Horizontal Gene Transfer by : Maria Boekels Gogarten

Download or read book Horizontal Gene Transfer written by Maria Boekels Gogarten and published by Humana Press. This book was released on 2008-11-01 with total page 552 pages. Available in PDF, EPUB and Kindle. Book excerpt: Horizontal gene transfer (HGT) events encompass processes as varied as the exchange of genetic material between microbes coexisting in the same environment, between symbiotic bacteria and their eukaryotic hosts, and the evolution of organelles by symbiosis, in which whole genomes are acquired. In Horizontal Gene Transfer: Genomes in Flux, expert researchers contribute an overview of HGT concepts as well as specific case histories that highlight the most current progress to inspire future work. Divided into three sections, the volume begins with an overview of terminology, concepts and the implications of HGT on current evolutionary thought and philosophy, and continues with methods involving computer and bioinformatics analyses of genomic data as well as molecular biology techniques for identifying, quantifying, and differentiating instances of HGT. A section of case studies follows, which provides detailed accounts of how HGT has shaped evolution across the diversity of organisms and organismal lineages. As a volume of the highly successful Methods in Molecular BiologyTM series, this work provides the kind of detailed description and implementation advice that is crucial for getting optimal results. Cutting-edge and thoroughly detailed, Horizontal Gene Transfer: Genomes in Flux examines how HGT has contributed to genome evolution and how understanding HGT impacts our ability to accurately reconstruct and comprehend the web-like evolutionary history in order to aid scientists in furthering their own research.

Horizontal Gene Transfer

Author : Tomás G. Villa
Publisher : Springer
ISBN 13 : 3030218627
Total Pages : 425 pages
Book Rating : 4.0/5 (32 download)

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Book Synopsis Horizontal Gene Transfer by : Tomás G. Villa

Download or read book Horizontal Gene Transfer written by Tomás G. Villa and published by Springer. This book was released on 2019-08-13 with total page 425 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book focuses on the evolutionary impact of horizontal gene transfer processes on pathogenicity, environmental adaptation and biological speciation. Newly acquired genetic material has been considered as a driving force in evolution for prokaryotic genomes for many years, with recent technical developments advancing this field further. However, the extent and implications of gene transfer between prokaryotes and eukaryotes still raise controversies. This multi-authored volume introduces various means by which DNA can be exchanged, covers gene transfer between prokaryotes and their viruses as well as between bacteria and eukaryotes, such as fungi, plants and animals, and addresses the role of horizontal gene transfer in human diseases. Aspects discussed also include the relevance for virulence and drug resistance development on one hand, and for the occurrence of naturally derived antibiotics and other secondary metabolites on the other hand. This book offers new insights to anyone interested in genome evolution and the exchange of DNA between the different domains of life, the genetic toolkit for adaptation and the emergence of multidrug resistant bacteria.

Microbial Phylogeny and Evolution

Author : Jan Sapp
Publisher : Oxford University Press on Demand
ISBN 13 : 0195168771
Total Pages : 349 pages
Book Rating : 4.1/5 (951 download)

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Book Synopsis Microbial Phylogeny and Evolution by : Jan Sapp

Download or read book Microbial Phylogeny and Evolution written by Jan Sapp and published by Oxford University Press on Demand. This book was released on 2005-03-03 with total page 349 pages. Available in PDF, EPUB and Kindle. Book excerpt: The extent of lateral gene transfer among diverse microbes has effectively broken down the concept of species when we seek to apply it to the microbial world. This book brings together workers to try to reach an accomodation and consensus on the outline of how cellular life has evolved.

Size Limits of Very Small Microorganisms

Author : National Research Council
Publisher : National Academies Press
ISBN 13 : 9780309172745
Total Pages : 164 pages
Book Rating : 4.1/5 (727 download)

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Book Synopsis Size Limits of Very Small Microorganisms by : National Research Council

Download or read book Size Limits of Very Small Microorganisms written by National Research Council and published by National Academies Press. This book was released on 1999-09-13 with total page 164 pages. Available in PDF, EPUB and Kindle. Book excerpt: How small can a free-living organism be? On the surface, this question is straightforward-in principle, the smallest cells can be identified and measured. But understanding what factors determine this lower limit, and addressing the host of other questions that follow on from this knowledge, require a fundamental understanding of the chemistry and ecology of cellular life. The recent report of evidence for life in a martian meteorite and the prospect of searching for biological signatures in intelligently chosen samples from Mars and elsewhere bring a new immediacy to such questions. How do we recognize the morphological or chemical remnants of life in rocks deposited 4 billion years ago on another planet? Are the empirical limits on cell size identified by observation on Earth applicable to life wherever it may occur, or is minimum size a function of the particular chemistry of an individual planetary surface? These questions formed the focus of a workshop on the size limits of very small organisms, organized by the Steering .Group for the Workshop on Size Limits of Very Small Microorganisms and held on October 22 and 23, 1998. Eighteen invited panelists, representing fields ranging from cell biology and molecular genetics to paleontology and mineralogy, joined with an almost equal number of other participants in a wide-ranging exploration of minimum cell size and the challenge of interpreting micro- and nano-scale features of sedimentary rocks found on Earth or elsewhere in the solar system. This document contains the proceedings of that workshop. It includes position papers presented by the individual panelists, arranged by panel, along with a summary, for each of the four sessions, of extensive roundtable discussions that involved the panelists as well as other workshop participants.

Horizontal Gene Pool

Author : Christopher M. Thomas
Publisher : CRC Press
ISBN 13 : 0203304330
Total Pages : 459 pages
Book Rating : 4.2/5 (33 download)

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Book Synopsis Horizontal Gene Pool by : Christopher M. Thomas

Download or read book Horizontal Gene Pool written by Christopher M. Thomas and published by CRC Press. This book was released on 2003-09-02 with total page 459 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bacteria are the most ubiquitous of all organisms. Responsible for a number of diseases and for many of the chemical cycles on which life depends, they are genetically adaptable. Vital to this adaptability is the existence of autonomous genetic elements-plasmids-which promote genetic exchange and recombination. The genes carried by any particular plasmid may be found in only a few individuals of any species but can also be shared with other species and thus constitute a horizontal gene pool. This book explains the various contributions that plasmids make to this pool: the replication, stable inheritance and transfer modules, the phenotypic markers they carry, the way they evolve, the ways they contribute to their host population and the approaches that we use to study and classify them. It also looks at what we know about their activity in natural communities and the way that they interact with other mobile elements to promote bacterial evolution.

Stress-Induced Mutagenesis

Author : David Mittelman
Publisher : Springer Science & Business Media
ISBN 13 : 1461462800
Total Pages : 284 pages
Book Rating : 4.4/5 (614 download)

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Book Synopsis Stress-Induced Mutagenesis by : David Mittelman

Download or read book Stress-Induced Mutagenesis written by David Mittelman and published by Springer Science & Business Media. This book was released on 2013-03-12 with total page 284 pages. Available in PDF, EPUB and Kindle. Book excerpt: The discovery of stress-induced mutagenesis has changed ideas about mutation and evolution, and revealed mutagenic programs that differ from standard spontaneous mutagenesis in rapidly proliferating cells. The stress-induced mutations occur during growth-limiting stress, and can include adaptive mutations that allow growth in the otherwise growth-limiting environment. The stress responses increase mutagenesis specifically when cells are maladapted to their environments, i.e. are stressed, potentially accelerating evolution then. The mutation mechanism also includes temporary suspension of post-synthesis mismatch repair, resembling mutagenesis characteristic of some cancers. Stress-induced mutation mechanisms may provide important models for genome instability underlying some cancers and genetic diseases, resistance to chemotherapeutic and antibiotic drugs, pathogenicity of microbes, and many other important evolutionary processes. This book covers pathways of stress-induced mutagenesis in all systems. The principle focus is mammalian systems, but much of what is known of these pathways comes from non-mammalian systems.

Microbial Evolution

Author : Howard Ochman
Publisher :
ISBN 13 : 9781621820376
Total Pages : 0 pages
Book Rating : 4.8/5 (23 download)

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Book Synopsis Microbial Evolution by : Howard Ochman

Download or read book Microbial Evolution written by Howard Ochman and published by . This book was released on 2016 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bacteria have been the dominant forms of life on Earth for the past 3.5 billion years. They rapidly evolve, constantly changing their genetic architecture through horizontal DNA transfer and other mechanisms. Consequently, it can be difficult to define individual species and determine how they are related. Written and edited by experts in the field, this collection from Cold Spring Harbor Perspectives in Biology examines how bacteria and other microbes evolve, focusing on insights from genomics-based studies. Contributors discuss the origins of new microbial populations, the evolutionary and ecological mechanisms that keep species separate once they have diverged, and the challenges of constructing phylogenetic trees that accurately reflect their relationships. They describe the organization of microbial genomes, the various mutations that occur, including the birth of new genes de novo and by duplication, and how natural selection acts on those changes. The role of horizontal gene transfer as a strong driver of microbial evolution is emphasized throughout. The authors also explore the geologic evidence for early microbial evolution and describe the use of microbial evolution experiments to examine phenomena like natural selection. This volume will thus be essential reading for all microbial ecologists, population geneticists, and evolutionary biologists.

Extremophiles as Astrobiological Models

Author : Joseph Seckbach
Publisher : John Wiley & Sons
ISBN 13 : 1119591686
Total Pages : 416 pages
Book Rating : 4.1/5 (195 download)

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Book Synopsis Extremophiles as Astrobiological Models by : Joseph Seckbach

Download or read book Extremophiles as Astrobiological Models written by Joseph Seckbach and published by John Wiley & Sons. This book was released on 2021-01-13 with total page 416 pages. Available in PDF, EPUB and Kindle. Book excerpt: The data in this book are new or updated, and will serve also as Origin of Life and evolutionary studies. Endospores of bacteria have a long history of use as model organisms in astrobiology, including survival in extreme environments and interplanetary transfer of life. Numerous other bacteria as well as archaea, lichens, fungi, algae and tiny animals (tardigrades, or water bears) are now being investigated for their tolerance to extreme conditions in simulated or real space environments. Experimental results from exposure studies on the International Space Station and space probes for up to 1.5 years are presented and discussed. Suggestions for extaterrestrial energy sources are also indicated. Audience Researchers and graduate students in microbiology, biochemistry, molecular biology and astrobiology, as well as anyone interested in the search for extraterrestrial life and its technical preparations.

Horizontal Gene Transfer in the Evolution of Pathogenesis

Author : Michael Hensel
Publisher : Cambridge University Press
ISBN 13 : 1139472054
Total Pages : 335 pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis Horizontal Gene Transfer in the Evolution of Pathogenesis by : Michael Hensel

Download or read book Horizontal Gene Transfer in the Evolution of Pathogenesis written by Michael Hensel and published by Cambridge University Press. This book was released on 2008-06-30 with total page 335 pages. Available in PDF, EPUB and Kindle. Book excerpt: Horizontal gene transfer is a major driving force in the evolution of many bacterial pathogens. The development of high-throughput sequencing tools and more sophisticated genomic and proteomic techniques in recent years has resulted in a better understanding of this phenomenon. Written by leading experts in the field, this edited volume is aimed at graduate students and researchers and provides an overview of current knowledge relating to the evolution of microbial pathogenicity. This volume provides an overview of the mechanisms and biological consequences of the genome rearrangements resulting from horizontal gene transfer, in both prokaryotes and eukaryotes, as well as overviews of the key mobile genetic elements involved. Subsequent chapters focus on paradigms for the evolution of important bacterial pathogens, including Salmonella enterica, Streptococcus pneumoniae, and Staphylococcus aureus. The influence of socioeconomic parameters in the dissemination of transferable elements, such as antibiotic resistant genes in bacteria, is also discussed.

Artificial Intelligence and Soft Computing

Author : Leszek Rutkowski
Publisher : Springer
ISBN 13 : 3319912534
Total Pages : 796 pages
Book Rating : 4.3/5 (199 download)

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Book Synopsis Artificial Intelligence and Soft Computing by : Leszek Rutkowski

Download or read book Artificial Intelligence and Soft Computing written by Leszek Rutkowski and published by Springer. This book was released on 2018-05-24 with total page 796 pages. Available in PDF, EPUB and Kindle. Book excerpt: The two-volume set LNAI 10841 and LNAI 10842 constitutes the refereed proceedings of the 17th International Conference on Artificial Intelligence and Soft Computing, ICAISC 2018, held in Zakopane, Poland in June 2018. The 140 revised full papers presented were carefully reviewed and selected from 242 submissions. The papers included in the first volume are organized in the following three parts: neural networks and their applications; evolutionary algorithms and their applications; and pattern classification.

Evolution Through Genetic Exchange

Author : Michael L Arnold
Publisher : Oxford University Press
ISBN 13 : 0198570066
Total Pages : 271 pages
Book Rating : 4.1/5 (985 download)

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Book Synopsis Evolution Through Genetic Exchange by : Michael L Arnold

Download or read book Evolution Through Genetic Exchange written by Michael L Arnold and published by Oxford University Press. This book was released on 2006-07-27 with total page 271 pages. Available in PDF, EPUB and Kindle. Book excerpt: More and more data indicate that evolution has resulted in lineages consisting of mosaics of genes derived from different ancestors. It is therefore becoming increasingly clear that the tree is an inadequate metaphor of evolutionary change. In this book, Arnold promotes the 'web-of-life' metaphor as a more appropriate representation of evolutionary change in all lifeforms.