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Genomics In Azure
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Book Synopsis Genomics in the Azure Cloud by : Colby T. Ford
Download or read book Genomics in the Azure Cloud written by Colby T. Ford and published by "O'Reilly Media, Inc.". This book was released on 2022-11-14 with total page 319 pages. Available in PDF, EPUB and Kindle. Book excerpt: This practical guide bridges the gap between general cloud computing architecture in Microsoft Azure and scientific computing for bioinformatics and genomics. You'll get a solid understanding of the architecture patterns and services that are offered in Azure and how they might be used in your bioinformatics practice. You'll get code examples that you can reuse for your specific needs. And you'll get plenty of concrete examples to illustrate how a given service is used in a bioinformatics context. You'll also get valuable advice on how to: Use enterprise platform services to easily scale your bioinformatics workloads Organize, query, and analyze genomic data at scale Build a genomics data lake and accompanying data warehouse Use Azure Machine Learning to scale your model training, track model performance, and deploy winning models Orchestrate and automate processing pipelines using Azure Data Factory and Databricks Cloudify your organization's existing bioinformatics pipelines by moving your workflows to Azure high-performance compute services And more
Book Synopsis Genomics in Azure by : Colby T. Ford
Download or read book Genomics in Azure written by Colby T. Ford and published by Manning. This book was released on 2022-12-27 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Streamline genomics research using the built-in services and tools in Microsoft Azure. On this powerful cloud platform, you can scale analysis without spiraling costs, automate time-consuming tasks, and implement security and compliance planning for sensitive data. Genomics in Azure teaches bioinformaticians how to create cloud-based platforms for biotech, pharmaceutical, and life sciences workloads. Enterprises worldwide use Azure’s best-in-class services to store and analyze their data. This book shows you how easy it is to use those tools for genomics research. You’ll learn how to transfer your genomic data to the cloud and organize it for your specific needs. Go hands-on to set up large-scale bioinformatics pipelines in Databricks, and handle sequence alignment and variant calling at-scale using other Azure compute services. By the time you’re finished reading, you’ll be ready to start working and collaborating on cloud solution designs for all your research needs. Purchase of the print book includes a free eBook in PDF, Kindle, and ePub formats from Manning Publications.
Book Synopsis Genomics in the Cloud by : Geraldine A. Van der Auwera
Download or read book Genomics in the Cloud written by Geraldine A. Van der Auwera and published by O'Reilly Media. This book was released on 2020-04-02 with total page 496 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data in the genomics field is booming. In just a few years, organizations such as the National Institutes of Health (NIH) will host 50+ petabytes—or over 50 million gigabytes—of genomic data, and they’re turning to cloud infrastructure to make that data available to the research community. How do you adapt analysis tools and protocols to access and analyze that volume of data in the cloud? With this practical book, researchers will learn how to work with genomics algorithms using open source tools including the Genome Analysis Toolkit (GATK), Docker, WDL, and Terra. Geraldine Van der Auwera, longtime custodian of the GATK user community, and Brian O’Connor of the UC Santa Cruz Genomics Institute, guide you through the process. You’ll learn by working with real data and genomics algorithms from the field. This book covers: Essential genomics and computing technology background Basic cloud computing operations Getting started with GATK, plus three major GATK Best Practices pipelines Automating analysis with scripted workflows using WDL and Cromwell Scaling up workflow execution in the cloud, including parallelization and cost optimization Interactive analysis in the cloud using Jupyter notebooks Secure collaboration and computational reproducibility using Terra
Book Synopsis Genomics in the Cloud by : Geraldine A. Van der Auwera
Download or read book Genomics in the Cloud written by Geraldine A. Van der Auwera and published by "O'Reilly Media, Inc.". This book was released on 2020-04-02 with total page 570 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data in the genomics field is booming. In just a few years, organizations such as the National Institutes of Health (NIH) will host 50+ petabytesâ??or over 50 million gigabytesâ??of genomic data, and theyâ??re turning to cloud infrastructure to make that data available to the research community. How do you adapt analysis tools and protocols to access and analyze that volume of data in the cloud? With this practical book, researchers will learn how to work with genomics algorithms using open source tools including the Genome Analysis Toolkit (GATK), Docker, WDL, and Terra. Geraldine Van der Auwera, longtime custodian of the GATK user community, and Brian Oâ??Connor of the UC Santa Cruz Genomics Institute, guide you through the process. Youâ??ll learn by working with real data and genomics algorithms from the field. This book covers: Essential genomics and computing technology background Basic cloud computing operations Getting started with GATK, plus three major GATK Best Practices pipelines Automating analysis with scripted workflows using WDL and Cromwell Scaling up workflow execution in the cloud, including parallelization and cost optimization Interactive analysis in the cloud using Jupyter notebooks Secure collaboration and computational reproducibility using Terra
Book Synopsis Genomics in the AWS Cloud by : Catherine Vacher
Download or read book Genomics in the AWS Cloud written by Catherine Vacher and published by John Wiley & Sons. This book was released on 2023-04-19 with total page 360 pages. Available in PDF, EPUB and Kindle. Book excerpt: Perform genome analysis and sequencing of data with Amazon Web Services Genomics in the AWS Cloud: Analyzing Genetic Code Using Amazon Web Services enables a person who has moderate familiarity with AWS Cloud to perform full genome analysis and research. Using the information in this book, you'll be able to take a FASTQ file containing raw data from a lab or a BAM file from a service provider and perform genome analysis on it. You'll also be able to identify potentially pathogenic gene sequences. Get an introduction to Whole Genome Sequencing (WGS) Make sense of WGS on AWS Master AWS services for genome analysis Some key advantages of using AWS for genomic analysis is to help researchers utilize a wide choice of compute services that can process diverse datasets in analysis pipelines. Genomic sequencers that generate raw data files are located in labs on premises and AWS provides solutions to make it easy for customers to transfer these files to AWS reliably and securely. Storing Genomics and Medical (e.g., imaging) data at different stages requires enormous storage in a cost-effective manner. Amazon Simple Storage Service (Amazon S3), Amazon Glacier, and Amazon Elastics Block Store (Amazon EBS) provide the necessary solutions to securely store, manage, and scale genomic file storage. Moreover, the storage services can interface with various compute services from AWS to process these files. Whether you're just getting started or have already been analyzing genomics data using the AWS Cloud, this book provides you with the information you need in order to use AWS services and features in the ways that will make the most sense for your genomic research.
Book Synopsis Securing IoT and Big Data by : Vijayalakshmi Saravanan
Download or read book Securing IoT and Big Data written by Vijayalakshmi Saravanan and published by CRC Press. This book was released on 2020-12-17 with total page 187 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book covers IoT and Big Data from a technical and business point of view. The book explains the design principles, algorithms, technical knowledge, and marketing for IoT systems. It emphasizes applications of big data and IoT. It includes scientific algorithms and key techniques for fusion of both areas. Real case applications from different industries are offering to facilitate ease of understanding the approach. The book goes on to address the significance of security algorithms in combing IoT and big data which is currently evolving in communication technologies. The book is written for researchers, professionals, and academicians from interdisciplinary and transdisciplinary areas. The readers will get an opportunity to know the conceptual ideas with step-by-step pragmatic examples which makes ease of understanding no matter the level of the reader.
Book Synopsis Bioinformatics and Human Genomics Research by : Diego A. Forero
Download or read book Bioinformatics and Human Genomics Research written by Diego A. Forero and published by CRC Press. This book was released on 2021-12-22 with total page 374 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in high-throughput biological methods have led to the publication of a large number of genome-wide studies in human and animal models. In this context, recent tools from bioinformatics and computational biology have been fundamental for the analysis of these genomic studies. The book Bioinformatics and Human Genomics Research provides updated and comprehensive information about multiple approaches of the application of bioinformatic tools to research in human genomics. It covers strategies analysis of genome-wide association studies, genome-wide expression studies and genome-wide DNA methylation, among other topics. It provides interesting strategies for data mining in human genomics, network analysis, prediction of binding sites for miRNAs and transcription factors, among other themes. Experts from all around the world in bioinformatics and human genomics have contributed chapters in this book. Readers will find this book as quite useful for their in silico explorations, which would contribute to a better and deeper understanding of multiple biological processes and of pathophysiology of many human diseases.
Book Synopsis Deep Learning for Genomics by : Upendra Kumar Devisetty
Download or read book Deep Learning for Genomics written by Upendra Kumar Devisetty and published by Packt Publishing Ltd. This book was released on 2022-11-11 with total page 270 pages. Available in PDF, EPUB and Kindle. Book excerpt: Learn concepts, methodologies, and applications of deep learning for building predictive models from complex genomics data sets to overcome challenges in the life sciences and biotechnology industries Key FeaturesApply deep learning algorithms to solve real-world problems in the field of genomicsExtract biological insights from deep learning models built from genomic datasetsTrain, tune, evaluate, deploy, and monitor deep learning models for enabling predictions in genomicsBook Description Deep learning has shown remarkable promise in the field of genomics; however, there is a lack of a skilled deep learning workforce in this discipline. This book will help researchers and data scientists to stand out from the rest of the crowd and solve real-world problems in genomics by developing the necessary skill set. Starting with an introduction to the essential concepts, this book highlights the power of deep learning in handling big data in genomics. First, you'll learn about conventional genomics analysis, then transition to state-of-the-art machine learning-based genomics applications, and finally dive into deep learning approaches for genomics. The book covers all of the important deep learning algorithms commonly used by the research community and goes into the details of what they are, how they work, and their practical applications in genomics. The book dedicates an entire section to operationalizing deep learning models, which will provide the necessary hands-on tutorials for researchers and any deep learning practitioners to build, tune, interpret, deploy, evaluate, and monitor deep learning models from genomics big data sets. By the end of this book, you'll have learned about the challenges, best practices, and pitfalls of deep learning for genomics. What you will learnDiscover the machine learning applications for genomicsExplore deep learning concepts and methodologies for genomics applicationsUnderstand supervised deep learning algorithms for genomics applicationsGet to grips with unsupervised deep learning with autoencodersImprove deep learning models using generative modelsOperationalize deep learning models from genomics datasetsVisualize and interpret deep learning modelsUnderstand deep learning challenges, pitfalls, and best practicesWho this book is for This deep learning book is for machine learning engineers, data scientists, and academicians practicing in the field of genomics. It assumes that readers have intermediate Python programming knowledge, basic knowledge of Python libraries such as NumPy and Pandas to manipulate and parse data, Matplotlib, and Seaborn for visualizing data, along with a base in genomics and genomic analysis concepts.
Book Synopsis Genomics in the Cloud by : Geraldine Van der Auwera
Download or read book Genomics in the Cloud written by Geraldine Van der Auwera and published by . This book was released on 2020 with total page 300 pages. Available in PDF, EPUB and Kindle. Book excerpt: Data in the genomics field is booming. In just a few years, organizations such as the National Institutes of Health (NIH) will host 50+ petabytes-or 52.4 million gigabytes-of genomic data, and they're turning to cloud infrastructure to make that data available to the research community. How do you adapt analysis tools and protocols to access and analyze that data in the cloud? With this practical book, researchers will learn how to work with genomics algorithms using open source tools including the Genome Analysis Toolkit (GATK), Docker, WDL, and Terra. Brian O'Connor of the UC Santa Cruz Genomics Institute and Geraldine Van der Auwera, longtime custodian of the GATK user community, guide you through the process. You'll learn by working with real data and genomics algorithms from the field. This book takes you through: Essential genomics and computing technology background Basic cloud computing operations Getting started with GATK Three major GATK best practices for variant discovery pipelines Automating analysis with scripted workflows using WDL and Cromwell Scaling up workflow execution in the cloud, including parallelization and cost optimization Interactive analysis in the cloud using Jupyter notebooks Secure collaboration and computational reproducibility using Terra.
Book Synopsis Artificial Intelligence and Machine Learning in Drug Design and Development by : Abhirup Khanna
Download or read book Artificial Intelligence and Machine Learning in Drug Design and Development written by Abhirup Khanna and published by John Wiley & Sons. This book was released on 2024-07-18 with total page 677 pages. Available in PDF, EPUB and Kindle. Book excerpt: The book is a comprehensive guide that explores the use of artificial intelligence and machine learning in drug discovery and development covering a range of topics, including the use of molecular modeling, docking, identifying targets, selecting compounds, and optimizing drugs. The intersection of Artificial Intelligence (AI) and Machine Learning (ML) within the field of drug design and development represents a pivotal moment in the history of healthcare and pharmaceuticals. The remarkable synergy between cutting-edge technology and the life sciences has ushered in a new era of possibilities, offering unprecedented opportunities, formidable challenges, and a tantalizing glimpse into the future of medicine. AI can be applied to all the key areas of the pharmaceutical industry, such as drug discovery and development, drug repurposing, and improving productivity within a short period. Contemporary methods have shown promising results in facilitating the discovery of drugs to target different diseases. Moreover, AI helps in predicting the efficacy and safety of molecules and gives researchers a much broader chemical pallet for the selection of the best molecules for drug testing and delivery. In this context, drug repurposing is another important topic where AI can have a substantial impact. With the vast amount of clinical and pharmaceutical data available to date, AI algorithms find suitable drugs that can be repurposed for alternative use in medicine. This book is a comprehensive exploration of this dynamic and rapidly evolving field. In an era where precision and efficiency are paramount in drug discovery, AI and ML have emerged as transformative tools, reshaping the way we identify, design, and develop pharmaceuticals. This book is a testament to the profound impact these technologies have had and will continue to have on the pharmaceutical industry, healthcare, and ultimately, patient well-being. The editors of this volume have assembled a distinguished group of experts, researchers, and thought leaders from both the AI, ML, and pharmaceutical domains. Their collective knowledge and insights illuminate the multifaceted landscape of AI and ML in drug design and development, offering a roadmap for navigating its complexities and harnessing its potential. In each section, readers will find a rich tapestry of knowledge, case studies, and expert opinions, providing a 360-degree view of AI and ML’s role in drug design and development. Whether you are a researcher, scientist, industry professional, policymaker, or simply curious about the future of medicine, this book offers 19 state-of-the-art chapters providing valuable insights and a compass to navigate the exciting journey ahead. Audience The book is a valuable resource for a wide range of professionals in the pharmaceutical and allied industries including researchers, scientists, engineers, and laboratory workers in the field of drug discovery and development, who want to learn about the latest techniques in machine learning and AI, as well as information technology professionals who are interested in the application of machine learning and artificial intelligence in drug development.
Book Synopsis Learning Microsoft Azure by : Jonah Carrio Andersson
Download or read book Learning Microsoft Azure written by Jonah Carrio Andersson and published by "O'Reilly Media, Inc.". This book was released on 2023-11-20 with total page 485 pages. Available in PDF, EPUB and Kindle. Book excerpt: If your organization plans to modernize services and move to the cloud from legacy software or a private cloud on premises, this book is for you. Software developers, solution architects, cloud engineers, and anybody interested in cloud technologies will learn fundamental concepts for cloud computing, migration, transformation, and development using Microsoft Azure. Author and Microsoft MVP Jonah Carrio Andersson guides you through cloud computing concepts and deployment models, the wide range of modern cloud technologies, application development with Azure, team collaboration services, security services, and cloud migration options in Microsoft Azure. You'll gain insight into the Microsoft Azure cloud services that you can apply in different business use cases, software development projects, and modern solutions in the cloud. You'll also become fluent with Azure cloud migration services, serverless computing technologies that help your development team work productively, Azure IoT, and Azure cognitive services that make your application smarter. This book also provides real-world advice and best practices based on the author's own Azure migration experience. Gain insight into which Azure cloud service best suits your company's particular needs Understand how to use Azure for different use cases and specific technical requirements Start developing cloud services, applications, and solutions in the Azure environment Learn how to migrate existing legacy applications to Microsoft Azure
Book Synopsis Hands-on Cloud Analytics with Microsoft Azure Stack by : Prashila Naik
Download or read book Hands-on Cloud Analytics with Microsoft Azure Stack written by Prashila Naik and published by BPB Publications. This book was released on 2020-11-12 with total page 309 pages. Available in PDF, EPUB and Kindle. Book excerpt: Explore and work with various Microsoft Azure services for real-time Data Analytics KEY FEATURESÊ Understanding what Azure can do with your data Understanding the analytics services offered by Azure Understand how data can be transformed to generate more data Understand what is done after a Machine Learning model is builtÊ Go through some Data Analytics real-world use cases ÊÊ DESCRIPTIONÊ Data is the key input for Analytics. Building and implementing data platforms such as Data Lakes, modern Data Marts, and Analytics at scale require the right cloud platform that Azure provides through its services. The book starts by sharing how analytics has evolved and continues to evolve. Following the introduction, you will deep dive into ingestion technologies. You will learn about Data processing services in Azure. You will next learn about what is meant by a Data Lake and understand how Azure Data Lake Storage is used for analytical workloads. You will then learn about critical services that will provide actual Machine Learning capabilities in Azure. The book also talks about Azure Data Catalog for cataloging, Azure AD for Access Management, Web Apps and PowerApps for cloud web applications, Cognitive services for Speech, Vision, Search and Language, Azure VM for computing and Data Science VMs, Functions as serverless computing, Kubernetes and Containers as deployment options. Towards the end, the book discusses two use cases on Analytics. WHAT WILL YOU LEARNÊÊ Explore and work with various Azure services Orchestrate and ingest data using Azure Data Factory Learn how to use Azure Stream Analytics Get to know more about Synapse Analytics and its features Learn how to use Azure Analysis Services and its functionalities Ê WHO THIS BOOK IS FORÊ This book is for anyone who has basic to intermediate knowledge of cloud and analytics concepts and wants to use Microsoft Azure for Data Analytics. This book will also benefit Data Scientists who want to use Azure for Machine Learning. Ê TABLE OF CONTENTSÊÊ 1. Ê Data and its power 2. Ê Evolution of Analytics and its Types 3. Ê Internet of Things 4. Ê AI and ML 5. Ê Why cloud 6. Ê What are a data lake and a modern datamart 7. Ê Introduction to Azure services 8. Ê Types of data 9. Ê Azure Data Factory 10. Stream Analytics 11. Azure Data Lake Store and Azure Storage 12. Cosmos DB 13.Ê Synapse Analytics 14.Ê Azure Databricks 15.Ê Azure Analysis Services 16.Ê Power BI 17.Ê Azure Machine Learning 18.Ê Sample Architectures and synergies - Real-Time and Batch 19.Ê Azure Data Catalog 20.Ê Azure Active Directory 21.Ê Azure Webapps 22.Ê Power apps 23.Ê Time Series Insights 24.Ê Azure Cognitive Services 25.Ê Azure Logicapps 26.Ê Azure VM 27.Ê Azure Functions 28.Ê Azure Containers 29.Ê Azure KubernetesÊ Service 30.Ê Use Case 1 31.Ê Use Case 2
Book Synopsis The Dictionary of Genomics, Transcriptomics and Proteomics by : Guenter Kahl
Download or read book The Dictionary of Genomics, Transcriptomics and Proteomics written by Guenter Kahl and published by John Wiley & Sons. This book was released on 2015-05-21 with total page 2742 pages. Available in PDF, EPUB and Kindle. Book excerpt: Now in its fifth edition and for the first time available as an electronic product with all entries cross-linked. This very successful long-seller has once again been thoroughly updated and greatly expanded. It now contains over 13,000 entries, and comprehensively covering genomics, transcriptomics, and proteomics. Each entry contains an extensive explanation, including a comprehensive listing of synonyms and acronyms, and all formulas have been redrawn to create a uniform style, while most of the figures are custom designed for this dictionary. The ultimate reference for all terms in the -omics fields.
Download or read book Cloud Security written by Jamuna S Murthy and published by CRC Press. This book was released on 2024-08-28 with total page 346 pages. Available in PDF, EPUB and Kindle. Book excerpt: This comprehensive work surveys the challenges, the best practices in the industry, and the latest developments and technologies. It covers the fundamentals of cloud computing, including deployment models, service models, and the benefits of cloud computing, followed by critical aspects of cloud security, including risk management, threat analysis, data protection, identity and access management, and compliance. Cloud Security explores the latest security technologies, such as encryption, multi‐factor authentication, and intrusion detection and prevention systems, and their roles in securing the cloud environment. Features: Introduces a user-centric measure of cyber security and provides a comparative study on different methodologies used for cyber security Offers real-world case studies and hands-on exercises to give a practical understanding of cloud security Includes the legal and ethical issues, including the impact of international regulations on cloud security Covers fully automated run-time security and vulnerability management Discusses related concepts to provide context, such as Cyber Crime, Password Authentication, Smart Phone Security with examples This book is aimed at postgraduate students, professionals, and academic researchers working in the fields of computer science and cloud computing.
Book Synopsis The Cloud-Based Demand-Driven Supply Chain by : Vinit Sharma
Download or read book The Cloud-Based Demand-Driven Supply Chain written by Vinit Sharma and published by John Wiley & Sons. This book was released on 2018-11-08 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: It’s time to get your head in the cloud! In today’s business environment, more and more people are requesting cloud-based solutions to help solve their business challenges. So how can you not only anticipate your clients’ needs but also keep ahead of the curve to ensure their goals stay on track? With the help of this accessible book, you’ll get a clear sense of cloud computing and understand how to communicate the benefits, drawbacks, and options to your clients so they can make the best choices for their unique needs. Plus, case studies give you the opportunity to relate real-life examples of how the latest technologies are giving organizations worldwide the opportunity to thrive as supply chain solutions in the cloud. Demonstrates how improvements in forecasting, collaboration, and inventory optimization can lead to cost savings Explores why cloud computing is becoming increasingly important Takes a close look at the types of cloud computing Makes sense of demand-driven forecasting using Amazon's cloud Whether you work in management, business, or IT, this is the dog-eared reference you’ll want to keep close by as you continue making sense of the cloud.
Book Synopsis Introduction To Computational Metagenomics by : Zhong Wang
Download or read book Introduction To Computational Metagenomics written by Zhong Wang and published by World Scientific. This book was released on 2022-04-11 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt: Breakthroughs in high-throughput genome sequencing and high-performance computing technologies have empowered scientists to decode many genomes including our own. Now they have a bigger ambition: to fully understand the vast diversity of microbial communities within us and around us, and to exploit their potential for the improvement of our health and environment. In this new field called metagenomics, microbial genomes are sequenced directly from the habitats without lab cultivation. Computational metagenomics, however, faces both a data challenge that deals with tens of tera-bases of sequences and an algorithmic one that deals with the complexity of thousands of species and their interactions.This interdisciplinary book is essential reading for those who are interested in beginning their own journey in computational metagenomics. It is a prism to look through various intricate computational metagenomics problems and unravel their three distinctive aspects: metagenomics, data engineering, and algorithms. Graduate students and advanced undergraduates from genomics science or computer science fields will find that the concepts explained in this book can serve as stepping stones for more advanced topics, while metagenomics practitioners and researchers from similar disciplines may use it to broaden their knowledge or identify new research targets.
Book Synopsis Pioneering Smart Healthcare 5.0 with IoT, Federated Learning, and Cloud Security by : Hassan, Ahdi
Download or read book Pioneering Smart Healthcare 5.0 with IoT, Federated Learning, and Cloud Security written by Hassan, Ahdi and published by IGI Global. This book was released on 2024-02-14 with total page 372 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Healthcare sector is experiencing a mindset change with the advent of Healthcare 5.0, bringing forth improved patient care and system efficiency. However, this transformation poses significant challenges. The growing digitization of healthcare systems raises concerns about the security and privacy of patient data, making seamless data sharing and collaboration increasingly complex tasks. Additionally, as the volume of healthcare data expands exponentially, efficient handling and analysis become vital for optimizing healthcare delivery and patient outcomes. Addressing these multifaceted issues is crucial for healthcare professionals, IT experts, data scientists, and researchers seeking to fully harness the potential of Healthcare 5.0. Pioneering Smart Healthcare 5.0 with IoT, Federated Learning, and Cloud Security presents a comprehensive solution to the pressing challenges in the digitalized healthcare industry. This research book dives into the principles of Healthcare 5.0 and explores practical implementation through cloud computing, data analytics, and federated learning. Readers will gain profound insights into the role of cloud computing in managing vast amounts of healthcare data, such as electronic health records and real-time analytics. Cloud-based frameworks, architectures, and relevant use cases are explored to optimize healthcare delivery and improve patient outcomes.
