Developing a Quantitative Framework for Designing Responsive Rna Electrochemical Aptamer-based Sensors and Applications

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ISBN 13 :
Total Pages : 252 pages
Book Rating : 4.:/5 (971 download)

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Book Synopsis Developing a Quantitative Framework for Designing Responsive Rna Electrochemical Aptamer-based Sensors and Applications by : Lauren R. Schoukroun-Barnes

Download or read book Developing a Quantitative Framework for Designing Responsive Rna Electrochemical Aptamer-based Sensors and Applications written by Lauren R. Schoukroun-Barnes and published by . This book was released on 2015 with total page 252 pages. Available in PDF, EPUB and Kindle. Book excerpt: Electrochemical aptamer-based sensors utilizing structure-switching aptamers are specific, selective, sensitive, and widely applicable to the detection of a variety of targets. The specificity is achieved by the binding properties of an electrode-bound RNA or DNA aptamer biorecognition element that is a single-strand of DNA or RNA selected for in vitro to bind to a specific target molecule. Signaling in this class of sensors arises from changes in electron transfer efficiency upon target-induced changes in the conformation/flexibility of the aptamer probe. The changes in aptamer flexibility can be readily monitored electrochemically. The signaling mechanism enables several approaches to maximize the analytical attributes (i.e., sensitivity, limit of detection, and observed binding affinity) of the aptamer sensor. The work in this dissertation describes the quantitative effects of two different approaches to control sensor signaling in order to rationally tune sensor performance.

Strategies and Technologies for Engineering Gene-regulatory RNA Devices

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ISBN 13 :
Total Pages : pages
Book Rating : 4.:/5 (881 download)

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Book Synopsis Strategies and Technologies for Engineering Gene-regulatory RNA Devices by : Andrew B. Kennedy

Download or read book Strategies and Technologies for Engineering Gene-regulatory RNA Devices written by Andrew B. Kennedy and published by . This book was released on 2014 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Engineered biological systems will provide solutions to diverse global challenges, enabling new and enhanced products for application in chemical processing, materials synthesis, sustainable technologies, and human health. Ability to manipulate and probe biological systems is limited by our ability to noninvasively access, process, report on, and respond to information encoded in the properties of molecules in living systems. Developing genetically encoded information processing and control technologies is critical to addressing and overcoming fundamental challenges in basic and applied biomedical research. RNA poses a strong candidate for a substrate in which to build genetic control devices. Examples of functional RNA molecules playing key roles in controlling the behavior of natural biological systems have grown over the past decade. The relative ease in modeling RNA molecules has enabled design of synthetic counterparts, act with diverse function as components including sensors, regulators, controllers (ligand-responsive RNA regulators), and scaffolds. These synthetic regulatory RNAs are providing new tools for temporal and spatial control in biological systems. A modular platform was described for the construction of RNA devices composed of distinct domains that encode sensing, transmission and actuation functions. The sensor domain is composed of an RNA aptamer, a nucleic acid structure evolved in vitro to bind with high affinity to a given ligand. The actuator domain is composed of a hammerhead ribozyme, which self-cleaves at a specific sequence under proper secondary and tertiary folding. The transmitter domain couples the sensor and actuator domains and communicates the ligand-bound conformational state of the sensor domain to the actuator domain by affecting the folded state of the actuator into either its ribozyme-active or -inactive conformation. The devices are placed in the 3' untranslated region of a target transcript, where self-cleavage inactivates the transcript, thereby lowering gene expression. This framework has been extended to the assembly of devices exhibiting higher-order information processing operations, including logic gates, signal filters and programmed cooperativity. As a demonstration of the broader significance of this class of devices, they have been successfully implemented as biological control systems to regulate signaling pathways and clinically-relevant phenotypes. However, it is critical to develop an improved understanding of the underlying molecular mechanisms and parameters guiding the activities of these devices in vivo in order to develop improved design strategies and associated regulatory activity to extend the utility of these genetic devices for a broader range of applications. To advance the RNA device design, we have developed and implemented novel methods to measure important parameters. We characterized the causal relationship between the in vitro device cleavage rate constant device parameter and in vivo gene- regulatory activity, and utilized this for efficient device performance characterization and design. We described a have novel, two-color, in vivo fluorescent activated cell sorting-based approach to identify sequences that yielded improved catalytic activities within the device platform and enabled efficient tailoring of device regulatory activities. We further developed a quantitative assay based on surface plasmon resonance technology for rapid measurements of device cleavage and ligand binding, the important parameters governing the underlying device mechanism. We incorporate this assay into the RNA device design cycle, pre-filtering candidate devices by in vitro cleavage and binding activity for subsequent in vivo testing. By this method we efficiently developed of new protein-responsive RNA devices in both yeast and mammalian hosts. Finally, we devised a platform utilizing next generation sequencing and fluorescent activated cell sorting for simultaneous measurements of in vitro cleavage and in vivo gene-regulatory activities of large RNA device libraries. Enabled by the large screening capacity, we develop a new RNA device architecture, with modularity instilled at the design level. By this approach we generate RNA devices without a programmed conformational change that results in improved device gene- regulatory performance. Taken together, these new technologies for characterizing important device performance characters and resultant gene-regulatory activity provide a comprehensive framework for designing, testing and implementing RNA genetic controllers for engineering biological systems.

Electrochemical Biosensors

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Publisher : CRC Press
ISBN 13 : 9814411477
Total Pages : 405 pages
Book Rating : 4.8/5 (144 download)

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Book Synopsis Electrochemical Biosensors by : Serge Cosnier

Download or read book Electrochemical Biosensors written by Serge Cosnier and published by CRC Press. This book was released on 2015-01-26 with total page 405 pages. Available in PDF, EPUB and Kindle. Book excerpt: Since four decades, rapid detection and monitoring in clinical and food diagnostics and in environmental and biodefense have paved the way for the elaboration of electrochemical biosensors. Thanks to their adaptability, ease of use in relatively complex samples, and their portability, electrochemical biosensors now are one of the mainstays of analy

Advances in Nucleic Acid Therapeutics

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Publisher : Royal Society of Chemistry
ISBN 13 : 1788012097
Total Pages : 566 pages
Book Rating : 4.7/5 (88 download)

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Book Synopsis Advances in Nucleic Acid Therapeutics by : Michael J Gait

Download or read book Advances in Nucleic Acid Therapeutics written by Michael J Gait and published by Royal Society of Chemistry. This book was released on 2019-02-11 with total page 566 pages. Available in PDF, EPUB and Kindle. Book excerpt: The sequencing of the human genome and subsequent elucidation of the molecular pathways that are important in the pathology of disease have provided unprecedented opportunities for the development of new therapeutics. Nucleic acid-based drugs have emerged in recent years to yield extremely promising candidates for drug therapy to a wide range of diseases. Advances in Nucleic Acid Therapeutics is a comprehensive review of the latest advances in the field, covering the background of the development of nucleic acids for therapeutic purposes to the array of drug development approaches currently being pursued using antisense, RNAi, aptamer, immune modulatory and other synthetic oligonucleotides. Nucleic acid therapeutics is a field that has been continually innovating to meet the challenges of drug discovery and development; bringing contributions together from leaders at the forefront of progress, this book depicts the many approaches currently being pursued in both academia and industry. A go-to volume for medicinal chemists, Advances in Nucleic Acid Therapeutics provides a broad overview of techniques of contemporary interest in drug discovery.

Aptamers for Analytical Applications

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Publisher : John Wiley & Sons
ISBN 13 : 3527342672
Total Pages : 426 pages
Book Rating : 4.5/5 (273 download)

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Book Synopsis Aptamers for Analytical Applications by : Yiyang Dong

Download or read book Aptamers for Analytical Applications written by Yiyang Dong and published by John Wiley & Sons. This book was released on 2019-02-11 with total page 426 pages. Available in PDF, EPUB and Kindle. Book excerpt: An essential guide that puts the focus on method developments and applications in aptamers In recent years, aptamer-based systems have been developed for a wide-range of analytical and medical applications. Aptamers for Analytical Applications offers an introduction to the topic, outlines the common protocols for aptamer synthesis, as well as providing information on the different optimization strategies that can obtain higher affinities to target molecules. The contributors?noted experts on the topic?provide an in-depth review of the characterization of aptamer-target molecule interaction and immobilization strategies and discuss the developments of methods for all the relevant applications. The book outlines different schemes to efficiently immobilize aptamers on substrates as well as summarizing the characterization methods for aptamer-ligand complexes. In addition, aptamer-based colorimetric, enzyme-linked, fluorescent, electrochemical, lateral flow and non-labeling analytical methods are presented. The book also reflects state-of-the-art and emerging applications of aptamer-based methods. This important resource: -Provides a guide to aptamers which provide highly specific and sensitive molecular recognition, with affinities in the range of antibodies and are much cheaper to produce -Offers a discussion of the analytical method developments and improvements with established systems and beyond -Offers a comprehensive guide to all the relevant application areas -Presents an authoritative book from contributors who are noted experts in the field Written for analytical chemists, biochemists, analytical researchers, Aptamers for Analytical Applications is a comprehensive book that adopts a methodological point of view to the important aspects of aptamer generation and modification with a strong emphasis on method developments for relevant applications.

Molecular Beacons

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Publisher : Springer Science & Business Media
ISBN 13 : 3642391095
Total Pages : 201 pages
Book Rating : 4.6/5 (423 download)

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Book Synopsis Molecular Beacons by : Chaoyong James Yang

Download or read book Molecular Beacons written by Chaoyong James Yang and published by Springer Science & Business Media. This book was released on 2013-08-15 with total page 201 pages. Available in PDF, EPUB and Kindle. Book excerpt: Molecular Beacons explains working principle of molecular beacons, discusses their design, synthesis, purification and characterization, explores their thermodynamic and kinetic properties, and more importantly, reviews their in vivo and in vitro applications with the emphasis on the design and modification of molecular beacons for in vivo mRNA imaging applications. This book is designed to bring together in a single resource an organized and comprehensive view of molecular beacons and will be a valuable resource for academic, clinical and industrial scientists and graduate students who may consider exploring molecular beacons in their research or practice. Chaoyong James Yang is the Lu Jiaxi Professor of Chemistry at Xiamen University, China. Weihong Tan is a Distinguished Professor of Chemistry and Biomedical Engineering at Hunan University, China and also a University of Florida Distinguished Professor and V. T. and Louis Jackson Professor of Chemistry at the University of Florida, USA.

Electrochemical DNA Biosensors

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Publisher : CRC Press
ISBN 13 : 9814241776
Total Pages : 568 pages
Book Rating : 4.8/5 (142 download)

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Book Synopsis Electrochemical DNA Biosensors by : Mehmet Sengun Ozsoz

Download or read book Electrochemical DNA Biosensors written by Mehmet Sengun Ozsoz and published by CRC Press. This book was released on 2012-04-23 with total page 568 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on the basic electrochemical applications of DNA in various areas, from basic principles to the most recent discoveries. The book comprises theoretical and experimental analysis of various properties of nucleic acids, research methods, and some promising applications. The topics discussed in the book include electrochemical detection of DNA hybridization based on latex/gold nanoparticle and nanotubes; nanomaterial-based electrochemical DNA detection; electrochemical detection of microorganism-based DNA biosensors; gold nanoparticle-based electrochemical DNA biosensors; electrochemical detection of the aptamer-target interaction; nanoparticle-induced catalysis for DNA biosensing; basic terms regarding electrochemical DNA (nucleic acids) biosensors; screen-printed electrodes for electrochemical DNA detection; application of field-effect transistors to label free electrical DNA biosensor arrays; and electrochemical detection of nucleic acids using branched DNA amplifiers.

Recent Advances in Analytical Chemistry

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Publisher : BoD – Books on Demand
ISBN 13 : 1789858097
Total Pages : 164 pages
Book Rating : 4.7/5 (898 download)

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Book Synopsis Recent Advances in Analytical Chemistry by : Muharrem Ince

Download or read book Recent Advances in Analytical Chemistry written by Muharrem Ince and published by BoD – Books on Demand. This book was released on 2019-04-10 with total page 164 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on recent and future trends in analytical methods and provides an overview of analytical chemistry. As a comprehensive analytical chemistry book, it takes a broad view of the subject and integrates a wide variety of approaches. The book provides separation approaches and method validation, as well as recent developments and applications in analytical chemistry. It is written primarily for researchers in the fields of analytical chemistry, environmental chemistry, and applied chemistry. The aim of the book is to explain the subject, clarify important studies, and compare and develop new and groundbreaking applications. Written by leading experts in their respective areas, the book is highly recommended for professionals interested in analytical chemistry because it provides specific and comprehensive examples.

Electrogenerated Chemiluminescence

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Publisher : CRC Press
ISBN 13 : 1135535795
Total Pages : 707 pages
Book Rating : 4.1/5 (355 download)

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Book Synopsis Electrogenerated Chemiluminescence by : Allen J. Bard

Download or read book Electrogenerated Chemiluminescence written by Allen J. Bard and published by CRC Press. This book was released on 2004-07-20 with total page 707 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first source on this expanding analytical science, this reference explores advances in the instrumentation, design, and application of techniques with electrogenerated chemiluminescence (ECL), examining the use and impact of ECL-based assays in clinical diagnostics, life science research, environmental testing, food and water evaluation, and th

Intracellular Delivery

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Publisher : Springer Science & Business Media
ISBN 13 : 9400712480
Total Pages : 871 pages
Book Rating : 4.4/5 (7 download)

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Book Synopsis Intracellular Delivery by : Aleš Prokop

Download or read book Intracellular Delivery written by Aleš Prokop and published by Springer Science & Business Media. This book was released on 2011-05-26 with total page 871 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book features a special subsection of Nanomedicine, an application of nanotechnology to achieve breakthroughs in healthcare. It exploits the improved and often novel physical, chemical and biological properties of materials only existent at the nanometer scale. As a consequence of small scale, nanosystems in most cases are efficiently uptaken by cells and appear to act at the intracellular level. Nanotechnology has the potential to improve diagnosis, treatment and follow-up of diseases, and includes targeted drug delivery and regenerative medicine; it creates new tools and methods that impact significantly upon existing conservative practices. This volume is a collection of authoritative reviews. In the introductory section we define the field (intracellular delivery). Then, the fundamental routes of nanodelivery devices, cellular uptake, types of delivery devices, particularly in terms of localized cellular delivery, both for small drug molecules, macromolecular drugs and genes; at the academic and applied levels, are covered. The following section is dedicated to enhancing delivery via special targeting motifs followed by the introduction of different types of intracellular nanodelivery devices (e.g. a brief description of their chemistry) and ways of producing these different devices. Finally, we put special emphasis on particular disease states and on other biomedical applications, whilst diagnostic and sensing issues are also included. Intracellular delivery / therapy is a highly topical which will stir great interest. Intracellular delivery enables much more efficient drug delivery since the impact (on different organelles and sites) is intracellular as the drug is not supplied externally within the blood stream. There is great potential for targeted delivery with improved localized delivery and efficacy.

Nanobiosensors

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Publisher : Academic Press
ISBN 13 : 0128043725
Total Pages : 928 pages
Book Rating : 4.1/5 (28 download)

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Book Synopsis Nanobiosensors by : Alexandru Grumezescu

Download or read book Nanobiosensors written by Alexandru Grumezescu and published by Academic Press. This book was released on 2016-09-28 with total page 928 pages. Available in PDF, EPUB and Kindle. Book excerpt: Nanobiosensors: Nanotechnology in the Agri-Food Industry, Volume 8, provides the latest information on the increasing demand for robust, rapid, inexpensive, and safe alternative technologies that monitor, test, and detect harmful or potentially dangerous foods. Due to their high sensitivity and selectivity, nanobiosensors have attracted attention for their use in monitoring not only biological contaminants in food, but also potential chemical and physical hazards. This book offers a broad overview regarding the current progress made in the field of nanosensors, including cutting-edge technological progress and the impact of these devices on the food industry. Special attention is given to the detection of microbial contaminants and harmful metabolotes, such as toxins and hormones, which have a great impact on both humans and animal health and feed. Includes the most up-to-date information on nanoparticles based biosensors and quantum dots for biological detection Provides application methods and techniques for research analysis for bacteriological detection and food testing Presents studies using analytical tools to improve food safety and quality analysis

Nucleic Acid Aptamers

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Publisher : Humana
ISBN 13 : 9781493931965
Total Pages : 0 pages
Book Rating : 4.9/5 (319 download)

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Book Synopsis Nucleic Acid Aptamers by : Günter Mayer

Download or read book Nucleic Acid Aptamers written by Günter Mayer and published by Humana. This book was released on 2015-11-10 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume provides protocol references covering recent developments in the aptamer field. Within the last decade, aptamers have become more and more popular, and their sophisticated biophysical properties together with their ability to be easily modified and, thus, adapted to various regimens makes them a very promising class of compounds. Divided into three sections, the book covers selection, a series of analytical methods to assess biophysical properties of aptamer-target interactions, as well as various applications of aptamers. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Practical and easy to follow, Nucleic Acid Aptamers: Selection, Characterization, and Application provides a state-of-the-art summary of recent developments in the aptamer field and will be a helpful resource for scientists in the life sciences working with aptamers as tools to elucidate biological systems.

Microfluidic Biosensors

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Publisher : Elsevier
ISBN 13 : 012823847X
Total Pages : 370 pages
Book Rating : 4.1/5 (282 download)

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Book Synopsis Microfluidic Biosensors by : Wing Cheung Mak

Download or read book Microfluidic Biosensors written by Wing Cheung Mak and published by Elsevier. This book was released on 2022-11-05 with total page 370 pages. Available in PDF, EPUB and Kindle. Book excerpt: Microfluidic Biosensors provides a comprehensive overview covering the most recent emerging technologies on the design, fabrication, and integration of microfluidics with transducers. These form various integrated microfluidic biosensors with device configurations ranging from 2D to 4D levels. Coverage also includes advanced printed microfluidic biosensors, flexible microfluidics for wearable biosensors, autonomous lab-on-a-chip biosensors, CMOS-base microanalysis systems, and microfluidic devices for mobile phone biosensing. The editors and contributors of this book represent both academia and industry, come from a varied range of backgrounds, and offer a global perspective. This book discusses the design and principle of microfluidic systems and uses them for biosensing applications. The microfluidic fabrication technologies covered in this book provide an up-to-date view, allowing the community to think of new ways to overcome challenges faced in this field. The focus is on existing and emerging technologies not currently being analyzed extensively elsewhere, providing a unique perspective and much-needed content. The editors have crafted this book to be accessible to all levels of academics from graduate students, researchers, and professors working in the fields of biosensors, microfluidics design, material science, analytical chemistry, biomedical devices, and biomedical engineering. It can also be useful for industry professionals working for microfluidic device manufacturers, or in the industry of biosensors and biomedical devices. Presents an in-depth overview of microfluidic biosensors and associated emerging technologies such as printed microfluidics and novel transducers Addresses a range of microfluidic biosensors with device configurations ranging from 2D to 4D levels Includes the commercialization aspects of microfluidic biosensors that provide insights for scientists and engineers in research and development

Cell-Free Gene Expression

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Publisher :
ISBN 13 : 9781071619988
Total Pages : 435 pages
Book Rating : 4.6/5 (199 download)

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Book Synopsis Cell-Free Gene Expression by : Ashty S. Karim

Download or read book Cell-Free Gene Expression written by Ashty S. Karim and published by . This book was released on 2022 with total page 435 pages. Available in PDF, EPUB and Kindle. Book excerpt: This detailed volume explores perspectives and methods using cell-free expression (CFE) to enable next-generation synthetic biology applications. The first section focuses on tools for CFE systems, including a primer on DNA handling and reproducibility, as well as methods for cell extract preparation from diverse organisms and enabling high-throughput cell-free experimentation. The second section provides an array of applications for CFE systems, such as metabolic engineering, membrane-based and encapsulated CFE, cell-free sensing and detection, and educational kits. Written for the highly successful Methods in Molecular Biology series, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and practical, Cell‐Free Gene Expression: Methods and Protocols serves as an ideal guide for researchers seeking technical methods to current aspects of CFE and related applications.

DNA Conjugates and Sensors

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Publisher : Royal Society of Chemistry
ISBN 13 : 1849734933
Total Pages : 317 pages
Book Rating : 4.8/5 (497 download)

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Book Synopsis DNA Conjugates and Sensors by : Keith R Fox

Download or read book DNA Conjugates and Sensors written by Keith R Fox and published by Royal Society of Chemistry. This book was released on 2012-11-30 with total page 317 pages. Available in PDF, EPUB and Kindle. Book excerpt: Applications of nucleic acids have developed recently to provide solutions for biosensors, diagnostic tools and as platforms for the assembly of complex structures. These developments have been possible as their base sequence can be used to assemble precise structures following simple and predictable rules. Self-assembled DNA can then be amplified using polymerase chain reaction (PCR) and this ultimately enables the preparation of synthetic nucleic acids. Their use as molecular tools or DNA-conjugates has recently been enhanced by the addition of other groups including enzymes, fluorophores and small molecules. Written by leaders in the field, this volume describes the preparation and application of these DNA-conjugates. Several have been used as sensors (aptamers, riboswitches and nanostructures) based on the ability of nucleic acids to adopt specific structures in the presence of ligands, whilst others link reporter groups such as proteins or fluorophores to RNA or DNA for detection, single molecule studies, and increasing the sensitivity of PCR. The book is relevant to researchers in areas related to analytical chemistry, chemical biology, medicinal chemistry, molecular pharmacology, and structural and molecular biology.

The Science and Applications of Synthetic and Systems Biology

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Publisher : National Academies Press
ISBN 13 : 0309219396
Total Pages : 570 pages
Book Rating : 4.3/5 (92 download)

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Book Synopsis The Science and Applications of Synthetic and Systems Biology by : Institute of Medicine

Download or read book The Science and Applications of Synthetic and Systems Biology written by Institute of Medicine and published by National Academies Press. This book was released on 2011-12-30 with total page 570 pages. Available in PDF, EPUB and Kindle. Book excerpt: Many potential applications of synthetic and systems biology are relevant to the challenges associated with the detection, surveillance, and responses to emerging and re-emerging infectious diseases. On March 14 and 15, 2011, the Institute of Medicine's (IOM's) Forum on Microbial Threats convened a public workshop in Washington, DC, to explore the current state of the science of synthetic biology, including its dependency on systems biology; discussed the different approaches that scientists are taking to engineer, or reengineer, biological systems; and discussed how the tools and approaches of synthetic and systems biology were being applied to mitigate the risks associated with emerging infectious diseases. The Science and Applications of Synthetic and Systems Biology is organized into sections as a topic-by-topic distillation of the presentations and discussions that took place at the workshop. Its purpose is to present information from relevant experience, to delineate a range of pivotal issues and their respective challenges, and to offer differing perspectives on the topic as discussed and described by the workshop participants. This report also includes a collection of individually authored papers and commentary.

Nanobiosensors for Biomolecular Targeting

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Publisher : Elsevier
ISBN 13 : 9780128139004
Total Pages : 0 pages
Book Rating : 4.1/5 (39 download)

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Book Synopsis Nanobiosensors for Biomolecular Targeting by : Subash C.B. Gopinath

Download or read book Nanobiosensors for Biomolecular Targeting written by Subash C.B. Gopinath and published by Elsevier. This book was released on 2018-10-23 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Nanobiosensors for Bio-molecular Targeting presents the latest analytical methods for the detection of different substances in the range of small molecules to whole cells, exploring the advantages and disadvantages of each method. Biosensors combine the component of biological origin and physicochemical detector to show the presence of analytes in a given sample. The use of bionanotechnology has led to a significant advancement in the progression of nanobiosensors and has been effectively used for biomedical diagnosis.