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Comparative Transcriptomic And Metabolomic Analysis Of Wild And Domesticated Apple
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Book Synopsis Comparative Transcriptomic and Metabolomic Analysis of Wild and Domesticated Apple by : Jung Cho
Download or read book Comparative Transcriptomic and Metabolomic Analysis of Wild and Domesticated Apple written by Jung Cho and published by . This book was released on 2016 with total page 208 pages. Available in PDF, EPUB and Kindle. Book excerpt: Domesticated plants have shaped the current human society as crops have been selectively bred over generations to meet human needs. However, this process has led to an inevitable narrowing of the cultivated plant's germplasm, resulting in the domesticated species only possessing a subset of the genetic diversity of its progenitor species. The vulnerability of the plant that results from the decrease in genetic diversity has been a topic of concern over the last two centuries and wild germplasm has emerged as a reservoir of alleles that may improve the agricultural traits of a plant in productivity, quality and resistance to disease and pest. The domesticated apple, Malus x domestica, is one of the most important fruits in the temperate region and are widely consumed around the world because of their high nutrition and year-round availability. However, domestication and vegetative propagation of the domesticated apple has also resulted in a decrease in genetic diversity due to only a small number of elite cultivars being used for breeding purposes. Various studies have suggested Malus sieversii, the wild apple species found in Central Asia to be the progenitor species of the domesticated apple. Investigating this wild germplasm has already identified many important traits such as resistance to diseases, pests as well as biotic and abiotic stress. With the recent developments in molecular genetic techniques such as RNA-sequencing and the completed genome sequencing of the domesticated apple cultivar, 'Golden Delicious', a detailed study comparing the genetic diversity between wild and domesticated apple seemed necessary. A comparative transcriptomic and non-targeted metabolomic study was undertaken on M. domestica, M. sieversii and M. sylvestris, the European wild crabapple. The metabolomic profiles of these three species showed how each species are characterized by a different group of metabolites. Also, ascorbyl glucoside, a stable form of vitamin C, was isolated for the first time in apple to the best of my knowledge and was found to be present in high concentrations in two M. sylvestris genotypes. Various possibilities of ascorbyl glucoside synthesis in apple are explored.
Book Synopsis Bioinformatics in Agriculture by : Pradeep Sharma
Download or read book Bioinformatics in Agriculture written by Pradeep Sharma and published by Academic Press. This book was released on 2022-04-28 with total page 707 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics in Agriculture: Next Generation Sequencing Era is a comprehensive volume presenting an integrated research and development approach to the practical application of genomics to improve agricultural crops. Exploring both the theoretical and applied aspects of computational biology, and focusing on the innovation processes, the book highlights the increased productivity of a translational approach. Presented in four sections and including insights from experts from around the world, the book includes: Section I: Bioinformatics and Next Generation Sequencing Technologies; Section II: Omics Application; Section III: Data mining and Markers Discovery; Section IV: Artificial Intelligence and Agribots. Bioinformatics in Agriculture: Next Generation Sequencing Era explores deep sequencing, NGS, genomic, transcriptome analysis and multiplexing, highlighting practices forreducing time, cost, and effort for the analysis of gene as they are pooled, and sequenced. Readers will gain real-world information on computational biology, genomics, applied data mining, machine learning, and artificial intelligence. This book serves as a complete package for advanced undergraduate students, researchers, and scientists with an interest in bioinformatics. Discusses integral aspects of molecular biology and pivotal tool sfor molecular breeding Enables breeders to design cost-effective and efficient breeding strategies Provides examples ofinnovative genome-wide marker (SSR, SNP) discovery Explores both the theoretical and practical aspects of computational biology with focus on innovation processes Covers recent trends of bioinformatics and different tools and techniques
Book Synopsis Transcriptomics of Fruit Growth, Development and Ripening by : Neftali Ochoa-Alejo
Download or read book Transcriptomics of Fruit Growth, Development and Ripening written by Neftali Ochoa-Alejo and published by Frontiers Media SA. This book was released on 2024-04-18 with total page 159 pages. Available in PDF, EPUB and Kindle. Book excerpt: Plant fruits are important from a biological, nutritional, and economic perspective. Fruits are primary sources of minerals, vitamins, sugars, organic acids, proteins, and pigments (among other nutrient compounds) for animals and humans, and there exist a vast variety of forms, sizes, and flavors produced by plants. Since fruit biological function is determined through the expression of specific genes, it is important to identify and characterize those genes involved in each developmental and ripening stage, which can be achieved using transcriptomic approaches.
Book Synopsis Plant secondary metabolic regulation and engineering by : Fangyuan Zhang
Download or read book Plant secondary metabolic regulation and engineering written by Fangyuan Zhang and published by Frontiers Media SA. This book was released on 2023-05-17 with total page 366 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Paleogenomics by : Charlotte Lindqvist
Download or read book Paleogenomics written by Charlotte Lindqvist and published by Springer. This book was released on 2019-01-07 with total page 427 pages. Available in PDF, EPUB and Kindle. Book excerpt: Advances in genome-scale DNA sequencing technologies have revolutionized genetic research on ancient organisms, extinct species, and past environments. When it is recoverable after hundreds or thousands of years of unintended preservation, “ancient DNA” (or aDNA) is often highly degraded, necessitating specialized handling and analytical approaches. Paleogenomics defines the field of reconstructing and analyzing the genomes of historic or long-dead organisms, most often through comparison with modern representatives of the same or similar species. The opportunity to isolate and study paleogenomes has radically transformed many fields, spanning biology, anthropology, agriculture, and medicine. Examples include understanding evolutionary relationships of extinct species known only from fossils, the domestication of plants and animals, and the evolution and geographical spread of certain pathogens. This pioneering book presents a snapshot view of the history, current status, and future prospects of paleogenomics, taking a broad viewpoint that covers a range of topics and organisms to provide an up-to-date status of the applications, challenges, and promise of the field. This book is intended for a variety of readerships, including upper-level undergraduate and graduate students, professionals and experts in the field, as well as anyone excited by the extraordinary insights that paleogenomics offers.
Book Synopsis Plant Systems Biology by : Sacha Baginsky
Download or read book Plant Systems Biology written by Sacha Baginsky and published by Springer Science & Business Media. This book was released on 2007-06-25 with total page 362 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume aims to provide a timely view of the state-of-the-art in systems biology. The editors take the opportunity to define systems biology as they and the contributing authors see it, and this will lay the groundwork for future studies. The volume is well-suited to both students and researchers interested in the methods of systems biology. Although the focus is on plant systems biology, the proposed material could be suitably applied to any organism.
Download or read book Fruit Genomics written by Dandekar and published by Wiley-Blackwell. This book was released on 2015-01-06 with total page 500 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Taxonomy of Wild Tomatoes and Their Relatives (Solanum Sect. Lycopersicoides, Sect. Juglandifolia, Sect. Lycopersicon; Solanaceae) by : Iris E. Peralta
Download or read book Taxonomy of Wild Tomatoes and Their Relatives (Solanum Sect. Lycopersicoides, Sect. Juglandifolia, Sect. Lycopersicon; Solanaceae) written by Iris E. Peralta and published by . This book was released on 2008 with total page 208 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis Omics in Plant Breeding by : Aluízio Borém
Download or read book Omics in Plant Breeding written by Aluízio Borém and published by John Wiley & Sons. This book was released on 2014-06-03 with total page 253 pages. Available in PDF, EPUB and Kindle. Book excerpt: Computational and high-throughput methods, such as genomics, proteomics, and transcriptomics, known collectively as “-omics,” have been used to study plant biology for well over a decade now. As these technologies mature, plant and crop scientists have started using these methods to improve crop varieties. Omics in Plant Breeding provides a timely introduction to key omicsbased methods and their application in plant breeding. Omics in Plant Breeding is a practical and accessible overview of specific omics-based methods ranging from metabolomics to phenomics. Covering a single methodology within each chapter, this book provides thorough coverage that ensures a strong understanding of each methodology both in its application to, and improvement of, plant breeding. Accessible to advanced students, researchers, and professionals, Omics in Plant Breeding will be an essential entry point into this innovative and exciting field. • A valuable overview of high-throughput, genomics-based technologies and their applications to plant breeding • Each chapter explores a single methodology, allowing for detailed and thorough coverage • Coverage ranges from well-established methodologies, such as genomics and proteomics, to emerging technologies, including phenomics and physionomics Aluízio Borém is a Professor of Plant Breeding at the University of Viçosa in Brazil. Roberto Fritsche-Neto is a Professor of Genetics and Plant Breeding at the University of São Paulo in Brazil.
Book Synopsis The Craft and Science of Coffee by : Britta Folmer
Download or read book The Craft and Science of Coffee written by Britta Folmer and published by Academic Press. This book was released on 2016-12-16 with total page 558 pages. Available in PDF, EPUB and Kindle. Book excerpt: The Craft and Science of Coffee follows the coffee plant from its origins in East Africa to its current role as a global product that influences millions of lives though sustainable development, economics, and consumer desire. For most, coffee is a beloved beverage. However, for some it is also an object of scientifically study, and for others it is approached as a craft, both building on skills and experience. By combining the research and insights of the scientific community and expertise of the crafts people, this unique book brings readers into a sustained and inclusive conversation, one where academic and industrial thought leaders, coffee farmers, and baristas are quoted, each informing and enriching each other. This unusual approach guides the reader on a journey from coffee farmer to roaster, market analyst to barista, in a style that is both rigorous and experience based, universally relevant and personally engaging. From on-farming processes to consumer benefits, the reader is given a deeper appreciation and understanding of coffee's complexity and is invited to form their own educated opinions on the ever changing situation, including potential routes to further shape the coffee future in a responsible manner. Presents a novel synthesis of coffee research and real-world experience that aids understanding, appreciation, and potential action Includes contributions from a multitude of experts who address complex subjects with a conversational approach Provides expert discourse on the coffee calue chain, from agricultural and production practices, sustainability, post-harvest processing, and quality aspects to the economic analysis of the consumer value proposition Engages with the key challenges of future coffee production and potential solutions
Book Synopsis Molecular and Metabolic Mechanisms Associated with Fleshy Fruit Quality by : Ana M. Fortes
Download or read book Molecular and Metabolic Mechanisms Associated with Fleshy Fruit Quality written by Ana M. Fortes and published by Frontiers Media SA. This book was released on 2017-09-08 with total page 438 pages. Available in PDF, EPUB and Kindle. Book excerpt: Fleshy Fruits are a late acquisition of plant evolution. In addition of protecting the seeds, these specialized organs unique to plants were developed to promote seed dispersal via the contribution of frugivorous animals. Fruit development and ripening is a complex process and understanding the underlying genetic and molecular program is a very active field of research. Part of the ripening process is directed to build up quality traits such as color, texture and aroma that make the fruit attractive and palatable. As fruit consumers, humans have developed a time long interaction with fruits which contributed to make the fruit ripening attributes conform our needs and preferences. This issue of Frontiers in Plant Science is intended to cover the most recent advances in our understanding of different aspects of fleshy fruit biology, including the genetic, molecular and metabolic mechanisms associated to each of the fruit quality traits. It is also of prime importance to consider the effects of environmental cues, cultural practices and postharvest methods, and to decipher the mechanism by which they impact fruit quality traits. Most of our knowledge of fleshy fruit development, ripening and quality traits comes from work done in a reduced number of species that are not only of economic importance but can also benefit from a number of genetic and genomic tools available to their specific research communities. For instance, working with tomato and grape offers several advantages since the genome sequences of these two fleshy fruit species have been deciphered and a wide range of biological and genetic resources have been developed. Ripening mutants are available for tomato which constitutes the main model system for fruit functional genomics. In addition, tomato is used as a reference species for climacteric fruit which ripening is controlled by the phytohormone ethylene. Likewise, grape is a reference species for non-climacteric fruit even though no single master switches controlling ripening initiation have been uncovered yet. In the last period, the genome sequence of an increased number of fruit crop species became available which creates a suitable situation for research communities around crops to get organized and information to be shared through public repositories. On the other hand, the availability of genome-wide expression profiling technologies has enabled an easier study of global transcriptional changes in fruit species where the sequenced genome is not yet available. In this issue authors will present recent progress including original data as well as authoritative reviews on our understanding of fleshy fruit biology focusing on tomato and grape as model species.
Book Synopsis Omics Technologies for Sustainable Agriculture and Global Food Security (Vol II) by : Anirudh Kumar
Download or read book Omics Technologies for Sustainable Agriculture and Global Food Security (Vol II) written by Anirudh Kumar and published by Springer Nature. This book was released on 2021-08-05 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: This edited book brings out a comprehensive collection of information on the modern omics-based research. The main focus of this book is to educate researchers about utility of omics-based technologies in rapid crop improvement. In last two decades, omics technologies have been utilized significantly in the area of plant sciences and has shown promising results. Omics technology has potential to address the challenge of food security in the near future. The comprehensive use of omics technology occurred in last two decades and helped greatly in the understanding of complex biological problems, improve crop productivity and ensure sustainable use of ecosystem services. This book is of interest to researchers and students of life sciences, biotechnology, plant biotechnology, agriculture, forestry, and environmental sciences. It is also a useful knowledge resource for national and international agricultural scientists.
Book Synopsis Bioinformatics of Genome Regulation and Structure by : Nikolay Kolchanov
Download or read book Bioinformatics of Genome Regulation and Structure written by Nikolay Kolchanov and published by Springer Science & Business Media. This book was released on 2013-06-05 with total page 373 pages. Available in PDF, EPUB and Kindle. Book excerpt: - The data gathered can be used to solve a wide range of problems - for basic science and applied science
Book Synopsis The Science of Flavonoids by : Erich Grotewold
Download or read book The Science of Flavonoids written by Erich Grotewold and published by Springer Science & Business Media. This book was released on 2008 with total page 300 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is the only book of its kind to provide an overview of the science of flavonoids in plants.
Book Synopsis The Strawberry by : George McMillan Darrow
Download or read book The Strawberry written by George McMillan Darrow and published by . This book was released on 1966 with total page 524 pages. Available in PDF, EPUB and Kindle. Book excerpt: "The book develops in precise terms the genetic structure, cross-breedings, and varieties of the numerous strawberry species. Large portions of this volume are devoted to detailed accounts of the experimental work on the strawberry in all parts of the world. The numerous contributors and their contributions to the devlopment of the plant are fully discussed".--BOOKJACKET.
Book Synopsis Comparative and Evolutionary Genomics of Angiosperm Trees by : Andrew Groover
Download or read book Comparative and Evolutionary Genomics of Angiosperm Trees written by Andrew Groover and published by Springer. This book was released on 2017-11-21 with total page 379 pages. Available in PDF, EPUB and Kindle. Book excerpt: Marking the change in focus of tree genomics from single species to comparative approaches, this book covers biological, genomic, and evolutionary aspects of angiosperm trees that provide information and perspectives to support researchers broadening the focus of their research. The diversity of angiosperm trees in morphology, anatomy, physiology and biochemistry has been described and cataloged by various scientific disciplines, but the molecular, genetic, and evolutionary mechanisms underlying this diversity have only recently been explored. Excitingly, advances in genomic and sequencing technologies are ushering a new era of research broadly termed comparative genomics, which simultaneously exploits and describes the evolutionary origins and genetic regulation of traits of interest. Within tree genomics, this research is already underway, as the number of complete genome sequences available for angiosperm trees is increasing at an impressive pace and the number of species for which RNAseq data are available is rapidly expanding. Because they are extensively covered by other literature and are rapidly changing, technical and computational approaches—such as the latest sequencing technologies—are not a main focus of this book. Instead, this comprehensive volume provides a valuable, broader view of tree genomics whose relevance will outlive the particulars of current-day technical approaches. The first section of the book discusses background on the evolution and diversification of angiosperm trees, as well as offers description of the salient features and diversity of the unique physiology and wood anatomy of angiosperm trees. The second section explores the two most advanced model angiosperm tree species (poplars and eucalypts) as well as species that are soon to emerge as new models. The third section describes the structural features and evolutionary histories of angiosperm tree genomes, followed by a fourth section focusing on the genomics of traits of biological, ecological, and economic interest. In summary, this book is a timely and well-referenced foundational resource for the forest tree community looking to embrace comparative approaches for the study of angiosperm trees.
Book Synopsis The Blood-Cerebrospinal Fluid Barrier by : Wei Zheng
Download or read book The Blood-Cerebrospinal Fluid Barrier written by Wei Zheng and published by CRC Press. This book was released on 2005-03-30 with total page 668 pages. Available in PDF, EPUB and Kindle. Book excerpt: Despite the existence of two barrier systems in the brain, research over the last century has mostly focused on the blood-brain barrier rather than on the blood-CSF barrier. Today, there is a greater understanding of the function of the blood-CSF barrier and of the choroid plexus, a tissue that is the primary site of this barrier. With the growing number of studies that focus on the role of the blood-CSF barrier in CNS homeostasis and neurological disorders, a modern overview of the blood-CSF barrier is long overdue. The Blood-Cerebrospinal Fluid Barrier is exclusively devoted to the blood-CSF barrier. Internationally renowned experts discuss the most recent progress in the field of choroid plexus physiology and update our knowledge of the function of the blood-CSF barrier. The book begins with an overview of the development and morphology of the choroid plexus, and then covers various aspects of its function, such as the regulation of choroidal blood flow, ion transport, and the production and transport of polypeptides. Following an extensive section on the role of the choroid plexus in CNS disorders, the final section discusses in vitro, in vivo, and in situ models of the blood-CSF barrier. This unique book analyzes a wealth of new research on the proven and potential roles of the choroid plexus/blood-CSF barrier in the brain. It is a valuable resource that will foster future studies in neuroscience, pharmacology, and toxicology.
