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Biological Data Mining In Protein Interaction Networks
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Book Synopsis Biological Data Mining in Protein Interaction Networks by : Li, Xiao-Li
Download or read book Biological Data Mining in Protein Interaction Networks written by Li, Xiao-Li and published by IGI Global. This book was released on 2009-05-31 with total page 450 pages. Available in PDF, EPUB and Kindle. Book excerpt: "The goal of this book is to disseminate research results and best practices from cross-disciplinary researchers and practitioners interested in, and working on bioinformatics, data mining, and proteomics"--Provided by publisher.
Book Synopsis Data Mining for Systems Biology by : Hiroshi Mamitsuka
Download or read book Data Mining for Systems Biology written by Hiroshi Mamitsuka and published by Humana. This book was released on 2019-08-04 with total page 243 pages. Available in PDF, EPUB and Kindle. Book excerpt: This fully updated book collects numerous data mining techniques, reflecting the acceleration and diversity of the development of data-driven approaches to the life sciences. The first half of the volume examines genomics, particularly metagenomics and epigenomics, which promise to deepen our knowledge of genes and genomes, while the second half of the book emphasizes metabolism and the metabolome as well as relevant medicine-oriented subjects. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of detail and expert implementation advice that is useful for getting optimal results. Authoritative and practical, Data Mining for Systems Biology: Methods and Protocols, Second Edition serves as an ideal resource for researchers of biology and relevant fields, such as medical, pharmaceutical, and agricultural sciences, as well as for the scientists and engineers who are working on developing data-driven techniques, such as databases, data sciences, data mining, visualization systems, and machine learning or artificial intelligence that now are central to the paradigm-altering discoveries being made with a higher frequency.
Book Synopsis Summarizing Biological Networks by : Sourav S. Bhowmick
Download or read book Summarizing Biological Networks written by Sourav S. Bhowmick and published by Springer. This book was released on 2017-04-17 with total page 146 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book focuses on the data mining, systems biology, and bioinformatics computational methods that can be used to summarize biological networks. Specifically, it discusses an array of techniques related to biological network clustering, network summarization, and differential network analysis which enable readers to uncover the functional and topological organization hidden in a large biological network. The authors also examine crucial open research problems in this arena. Academics, researchers, and advanced-level students will find this book to be a comprehensive and exceptional resource for understanding computational techniques and their applications for a summary of biological networks.
Book Synopsis Biological Data Mining and Its Applications in Healthcare by : Xiaoli Li
Download or read book Biological Data Mining and Its Applications in Healthcare written by Xiaoli Li and published by World Scientific. This book was released on 2013-11-28 with total page 436 pages. Available in PDF, EPUB and Kindle. Book excerpt: Biologists are stepping up their efforts in understanding the biological processes that underlie disease pathways in the clinical contexts. This has resulted in a flood of biological and clinical data from genomic and protein sequences, DNA microarrays, protein interactions, biomedical images, to disease pathways and electronic health records. To exploit these data for discovering new knowledge that can be translated into clinical applications, there are fundamental data analysis difficulties that have to be overcome. Practical issues such as handling noisy and incomplete data, processing compute-intensive tasks, and integrating various data sources, are new challenges faced by biologists in the post-genome era. This book will cover the fundamentals of state-of-the-art data mining techniques which have been designed to handle such challenging data analysis problems, and demonstrate with real applications how biologists and clinical scientists can employ data mining to enable them to make meaningful observations and discoveries from a wide array of heterogeneous data from molecular biology to pharmaceutical and clinical domains. Contents:Sequence Analysis:Mining the Sequence Databases for Homology Detection: Application to Recognition of Functions of Trypanosoma brucei brucei Proteins and Drug Targets (G Ramakrishnan, V S Gowri, R Mudgal, N R Chandra and N Srinivasan)Identification of Genes and Their Regulatory Regions Based on Multiple Physical and Structural Properties of a DNA Sequence (Xi Yang, Nancy Yu Song and Hong Yan)Mining Genomic Sequence Data for Related Sequences Using Pairwise Statistical Significance (Yuhong Zhang and Yunbo Rao)Biological Network Mining:Indexing for Similarity Queries on Biological Networks (Günhan Gülsoy, Md Mahmudul Hasan, Yusuf Kavurucu and Tamer Kahveci)Theory and Method of Completion for a Boolean Regulatory Network Using Observed Data (Takeyuki Tamura and Tatsuya Akutsu)Mining Frequent Subgraph Patterns for Classifying Biological Data (Saeed Salem)On the Integration of Prior Knowledge in the Inference of Regulatory Networks (Catharina Olsen, Benjamin Haibe-Kains, John Quackenbush and Gianluca Bontempi)Classification, Trend Analysis and 3D Medical Images:Classification and Its Application to Drug-Target Prediction (Jian-Ping Mei, Chee-Keong Kwoh, Peng Yang and Xiao-Li Li)Characterization and Prediction of Human Protein-Protein Interactions (Yi Xiong, Dan Syzmanski and Daisuke Kihara)Trend Analysis (Wen-Chuan Xie, Miao He and Jake Yue Chen)Data Acquisition and Preprocessing on Three Dimensional Medical Images (Yuhua Jiao, Liang Chen and Jin Chen)Text Mining and Its Biomedical Applications:Text Mining in Biomedicine and Healthcare (Hong-Jie Dai, Chi-Yang Wu, Richard Tzong-Han Tsai and Wen-Lian Hsu)Learning to Rank Biomedical Documents with Only Positive and Unlabeled Examples: A Case Study (Mingzhu Zhu, Yi-Fang Brook Wu, Meghana Samir Vasavada and Jason T L Wang)Automated Mining of Disease-Specific Protein Interaction Networks Based on Biomedical Literature (Rajesh Chowdhary, Boris R Jankovic, Rachel V Stankowski, John A C Archer, Xiangliang Zhang, Xin Gao, Vladimir B Bajic) Readership: Students, professionals, those who perform biological, medical and bioinformatics research. Keywords:Healthcare;Data Mining;Biological Data Mining;Protein Interactions;Gene Regulation;Text Mining;Biological Literature Mining;Drug Discovery;Disease Network;Biological Network;Graph Mining;Sequence Analysis;Structure Analysis;Trend Analysis;Medical ImagesKey Features:Each chapter of this book will include a section to introduce a specific class of data mining techniques, which will be written in a tutorial style so that even non-computational readers such as biologists and healthcare researchers can appreciate themThe book will disseminate the impact research results and best practices of data mining approaches to the cross-disciplinary researchers and practitioners from both the data mining disciplines and the life sciences domains. The authors of the book will be well-known data mining experts, bioinformaticians and cliniciansEach chapter will also provide a detailed description on how to apply the data mining techniques in real-world biological and clinical applications. Thus, readers of this book can easily appreciate the computational techniques and how they can be used to address their own research issues
Book Synopsis Data Management of Protein Interaction Networks by : Mario Cannataro
Download or read book Data Management of Protein Interaction Networks written by Mario Cannataro and published by John Wiley & Sons. This book was released on 2012-02-03 with total page 145 pages. Available in PDF, EPUB and Kindle. Book excerpt: Current PPI databases do not offer sophisticated querying interfaces and especially do not integrate existing information about proteins. Current algorithms for PIN analysis use only topological information, while emerging approaches attempt to exploit the biological knowledge related to proteins and kinds of interaction, e.g. protein function, localization, structure, described in Gene Ontology or PDB. The book discusses technologies, standards and databases for, respectively, generating, representing and storing PPI data. It also describes main algorithms and tools for the analysis, comparison and knowledge extraction from PINs. Moreover, some case studies and applications of PINs are also discussed.
Book Synopsis Protein Interaction Networks by : Aidong Zhang
Download or read book Protein Interaction Networks written by Aidong Zhang and published by . This book was released on 2014-05-14 with total page 294 pages. Available in PDF, EPUB and Kindle. Book excerpt: The first full survey of statistical, topological, data-mining, and ontology-based methods for analyzing protein-protein interaction networks.
Book Synopsis Analysis of Biological Networks by : Björn H. Junker
Download or read book Analysis of Biological Networks written by Björn H. Junker and published by John Wiley & Sons. This book was released on 2011-09-20 with total page 278 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introduction to biological networks and methods for their analysis Analysis of Biological Networks is the first book of its kind to provide readers with a comprehensive introduction to the structural analysis of biological networks at the interface of biology and computer science. The book begins with a brief overview of biological networks and graph theory/graph algorithms and goes on to explore: global network properties, network centralities, network motifs, network clustering, Petri nets, signal transduction and gene regulation networks, protein interaction networks, metabolic networks, phylogenetic networks, ecological networks, and correlation networks. Analysis of Biological Networks is a self-contained introduction to this important research topic, assumes no expert knowledge in computer science or biology, and is accessible to professionals and students alike. Each chapter concludes with a summary of main points and with exercises for readers to test their understanding of the material presented. Additionally, an FTP site with links to author-provided data for the book is available for deeper study. This book is suitable as a resource for researchers in computer science, biology, bioinformatics, advanced biochemistry, and the life sciences, and also serves as an ideal reference text for graduate-level courses in bioinformatics and biological research.
Book Synopsis Data Mining in Bioinformatics by : Jason T. L. Wang
Download or read book Data Mining in Bioinformatics written by Jason T. L. Wang and published by Springer Science & Business Media. This book was released on 2005 with total page 356 pages. Available in PDF, EPUB and Kindle. Book excerpt: Written especially for computer scientists, all necessary biology is explained. Presents new techniques on gene expression data mining, gene mapping for disease detection, and phylogenetic knowledge discovery.
Book Synopsis Biological Data Mining by : Jake Y. Chen
Download or read book Biological Data Mining written by Jake Y. Chen and published by CRC Press. This book was released on 2009-09-01 with total page 733 pages. Available in PDF, EPUB and Kindle. Book excerpt: Like a data-guzzling turbo engine, advanced data mining has been powering post-genome biological studies for two decades. Reflecting this growth, Biological Data Mining presents comprehensive data mining concepts, theories, and applications in current biological and medical research. Each chapter is written by a distinguished team of interdisciplinary data mining researchers who cover state-of-the-art biological topics. The first section of the book discusses challenges and opportunities in analyzing and mining biological sequences and structures to gain insight into molecular functions. The second section addresses emerging computational challenges in interpreting high-throughput Omics data. The book then describes the relationships between data mining and related areas of computing, including knowledge representation, information retrieval, and data integration for structured and unstructured biological data. The last part explores emerging data mining opportunities for biomedical applications. This volume examines the concepts, problems, progress, and trends in developing and applying new data mining techniques to the rapidly growing field of genome biology. By studying the concepts and case studies presented, readers will gain significant insight and develop practical solutions for similar biological data mining projects in the future.
Book Synopsis Clustering Challenges in Biological Networks by :
Download or read book Clustering Challenges in Biological Networks written by and published by . This book was released on with total page pages. Available in PDF, EPUB and Kindle. Book excerpt:
Book Synopsis New Approaches of Protein Function Prediction from Protein Interaction Networks by : Jingyu Hou
Download or read book New Approaches of Protein Function Prediction from Protein Interaction Networks written by Jingyu Hou and published by Academic Press. This book was released on 2017-01-13 with total page 124 pages. Available in PDF, EPUB and Kindle. Book excerpt: New Approaches of Protein Function Prediction from Protein Interaction Networks contains the critical aspects of PPI network based protein function prediction, including semantically assessing the reliability of PPI data, measuring the functional similarity between proteins, dynamically selecting prediction domains, predicting functions, and establishing corresponding prediction frameworks. Functional annotation of proteins is vital to biological and clinical research and other applications due to the important roles proteins play in various biological processes. Although the functions of some proteins have been annotated via biological experiments, there are still many proteins whose functions are yet to be annotated due to the limitations of existing methods and the high cost of experiments. To overcome experimental limitations, this book helps users understand the computational approaches that have been rapidly developed for protein function prediction. Provides innovative approaches and new developments targeting key issues in protein function prediction Presents heuristic ideas for further research in this challenging area
Book Synopsis Knowledge Discovery in Bioinformatics by : Xiaohua Hu
Download or read book Knowledge Discovery in Bioinformatics written by Xiaohua Hu and published by John Wiley & Sons. This book was released on 2007-06-11 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: The purpose of this edited book is to bring together the ideas and findings of data mining researchers and bioinformaticians by discussing cutting-edge research topics such as, gene expressions, protein/RNA structure prediction, phylogenetics, sequence and structural motifs, genomics and proteomics, gene findings, drug design, RNAi and microRNA analysis, text mining in bioinformatics, modelling of biochemical pathways, biomedical ontologies, system biology and pathways, and biological database management.
Book Synopsis Protein-protein Interactions and Networks by : Anna Panchenko
Download or read book Protein-protein Interactions and Networks written by Anna Panchenko and published by Springer Science & Business Media. This book was released on 2010-04-06 with total page 198 pages. Available in PDF, EPUB and Kindle. Book excerpt: The biological interactions of living organisms, and protein-protein interactions in particular, are astonishingly diverse. This comprehensive book provides a broad, thorough and multidisciplinary coverage of its field. It integrates different approaches from bioinformatics, biochemistry, computational analysis and systems biology to offer the reader a comprehensive global view of the diverse data on protein-protein interactions and protein interaction networks.
Book Synopsis Protein–Protein Interaction Regulators by : Siddhartha Roy
Download or read book Protein–Protein Interaction Regulators written by Siddhartha Roy and published by Royal Society of Chemistry. This book was released on 2020-12-15 with total page 399 pages. Available in PDF, EPUB and Kindle. Book excerpt: New genomic information has revealed the crucial role that protein-protein interactions (PPIs) play in regulating numerous cellular functions. Aberrant forms of these interactions are common in numerous diseases and thus PPIs have emerged as a vast class of critical drug targets. Despite the importance of PPIs in biology, it has been extremely challenging to convert targets into therapeutics and targeting PPIs had long been considered a very difficult task. However, over the past decade the field has advanced with increasing growth in the number of successful PPI regulators. Protein-Protein Interaction Regulators surveys the latest advances in the structural understanding of PPIs as well as recent developments in modulator discovery.
Book Synopsis Introduction to Biological Networks by : Alpan Raval
Download or read book Introduction to Biological Networks written by Alpan Raval and published by CRC Press. This book was released on 2016-04-19 with total page 329 pages. Available in PDF, EPUB and Kindle. Book excerpt: The new research area of genomics-inspired network biology lacks an introductory book that enables both physical/computational scientists and biologists to obtain a general yet sufficiently rigorous perspective of current thinking. Filling this gap, Introduction to Biological Networks provides a thorough introduction to genomics-inspired network bi
Book Synopsis Statistical and Evolutionary Analysis of Biological Networks by : Michael P. H. Stumpf
Download or read book Statistical and Evolutionary Analysis of Biological Networks written by Michael P. H. Stumpf and published by World Scientific. This book was released on 2010 with total page 179 pages. Available in PDF, EPUB and Kindle. Book excerpt: Networks provide a very useful way to describe a wide range of different data types in biology, physics and elsewhere. Apart from providing a convenient tool to visualize highly dependent data, networks allow stringent mathematical and statistical analysis. In recent years, much progress has been achieved to interpret various types of biological network data such as transcriptomic, metabolomic and protein interaction data as well as epidemiological data. Of particular interest is to understand the organization, complexity and dynamics of biological networks and how these are influenced by network evolution and functionality. This book reviews and explores statistical, mathematical and evolutionary theory and tools in the understanding of biological networks. The book is divided into comprehensive and self-contained chapters, each of which focuses on an important biological network type, explains concepts and theory and illustrates how these can be used to obtain insight into biologically relevant processes and questions. There are chapters covering metabolic, transcriptomic, protein interaction and epidemiological networks as well as chapters that deal with theoretical and conceptual material. The authors, who contribute to the book, are active, highly regarded and well-known in the network community.
Book Synopsis Data Mining: Foundations and Intelligent Paradigms by : Dawn E. Holmes
Download or read book Data Mining: Foundations and Intelligent Paradigms written by Dawn E. Holmes and published by Springer Science & Business Media. This book was released on 2012-01-12 with total page 364 pages. Available in PDF, EPUB and Kindle. Book excerpt: There are many invaluable books available on data mining theory and applications. However, in compiling a volume titled “DATA MINING: Foundations and Intelligent Paradigms: Volume 3: Medical, Health, Social, Biological and other Applications” we wish to introduce some of the latest developments to a broad audience of both specialists and non-specialists in this field.
