Bayesian Unimodal Density Regression for Causal Inference

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ISBN 13 :
Total Pages : 10 pages
Book Rating : 4.:/5 (16 download)

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Book Synopsis Bayesian Unimodal Density Regression for Causal Inference by : George Karabatsos

Download or read book Bayesian Unimodal Density Regression for Causal Inference written by George Karabatsos and published by . This book was released on 2011 with total page 10 pages. Available in PDF, EPUB and Kindle. Book excerpt: Karabatsos and Walker (2011) introduced a new Bayesian nonparametric (BNP) regression model. Through analyses of real and simulated data, they showed that the BNP regression model outperforms other parametric and nonparametric regression models of common use, in terms of predictive accuracy of the outcome (dependent) variable. The other, outperformed, regression models include random-effects/hierarchical linear and generalized linear models, when the random effects were assumed to be normally-distributed (Laird & Ware, 1982; Breslow & Clayton 1993), and when the random effects were more generally modeled by a nonparametric, Dirichlet process (DP) mixture prior (Kleinman & Ibrahim, 1998a,1998b). The authors argue that the new Bayesian nonparametric (BNP) regression model provides a novel, richer, and more valid approach to causal inference, which allows the researcher to investigate how treatments causally change the entire distribution (density) of (potential) outcomes, including not only the mean, but also other features of the outcome variable, such as quantiles (e.g., median, 10th percentile), and the variance. They illustrate the BNP model through the analysis of observational data, to estimate the causal effect of exposure to excellent high school math education (versus non-exposure, the control), on ACT math achievement. In the data analysis, they also compare the predictive accuracy of the new BNP model against other regression models. These other models assume symmetric distributions for the outcomes, and for the inverse-link function of the propensity score model (when specified), and have been recommended for causal inference from observational data. The other models include the normal linear regression model, having one interaction between (1) subject (pre-treatment) covariates, (2) treatment indicators, and (3) indicators of (greater than or equal) 5 matched groups of subjects, formed either by subclassification (Rosenbaum & Rubin, 1984) or optimal full matching on the estimated propensity score. They also compare with the BART model, which provides a very flexible regression of observed outcomes on the treatment variable and the covariates. Extensive data-based simulation studies have shown that, in terms of bias and mean square error in causal effect estimation, these linear regression models and BART outperform normal linear regression of outcomes using (1) propensity-score-based pair-matching or subclassification alone, (2) treatment indicators and estimated propensity scores as covariates, and (3) observation weights defined by inverse of propensity score estimates, when the only covariate is a treatment indicator (Robins, et al. 2000), and when the linear model also includes subject covariates (Kang & Schafer, 2007; Schafer & Kang, 2008; Hill, 2011). These results seemed to hold true, especially when both the outcome and propensity score models were misspecified for the data, which, arguably, almost always occurs in practice. Through the analysis of an observational data set on math achievement, the authors showed that the new BNP regression model can provide richer causal inferences with higher predictive accuracy, compared to typical causal models which focus inference on the mean outcome, and which make restrictive parametric assumptions about the outcome variable and about the propensity score model. The new BNP model allows one to investigate how treatments causally change any interesting aspect of the distribution (density) of (potential) outcomes, in a flexible manner. (Contains 3 tables and 1 figure.) [This research is supported by the Chicago Teacher Partnership Project.].

Bayesian Analysis of Linear Models

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Publisher : Routledge
ISBN 13 : 1351464477
Total Pages : 480 pages
Book Rating : 4.3/5 (514 download)

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Book Synopsis Bayesian Analysis of Linear Models by : Broemeling

Download or read book Bayesian Analysis of Linear Models written by Broemeling and published by Routledge. This book was released on 2017-11-22 with total page 480 pages. Available in PDF, EPUB and Kindle. Book excerpt: With Bayesian statistics rapidly becoming accepted as a way to solve applied statisticalproblems, the need for a comprehensive, up-to-date source on the latest advances in thisfield has arisen.Presenting the basic theory of a large variety of linear models from a Bayesian viewpoint,Bayesian Analysis of Linear Models fills this need. Plus, this definitive volume containssomething traditional-a review of Bayesian techniques and methods of estimation, hypothesis,testing, and forecasting as applied to the standard populations ... somethinginnovative-a new approach to mixed models and models not generally studied by statisticianssuch as linear dynamic systems and changing parameter models ... and somethingpractical-clear graphs, eary-to-understand examples, end-of-chapter problems, numerousreferences, and a distribution appendix.Comprehensible, unique, and in-depth, Bayesian Analysis of Linear Models is the definitivemonograph for statisticians, econometricians, and engineers. In addition, this text isideal for students in graduate-level courses such as linear models, econometrics, andBayesian inference.

Applied Bayesian Modeling and Causal Inference from Incomplete-Data Perspectives

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Publisher : John Wiley & Sons
ISBN 13 : 9780470090435
Total Pages : 448 pages
Book Rating : 4.0/5 (94 download)

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Book Synopsis Applied Bayesian Modeling and Causal Inference from Incomplete-Data Perspectives by : Andrew Gelman

Download or read book Applied Bayesian Modeling and Causal Inference from Incomplete-Data Perspectives written by Andrew Gelman and published by John Wiley & Sons. This book was released on 2004-09-03 with total page 448 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book brings together a collection of articles on statistical methods relating to missing data analysis, including multiple imputation, propensity scores, instrumental variables, and Bayesian inference. Covering new research topics and real-world examples which do not feature in many standard texts. The book is dedicated to Professor Don Rubin (Harvard). Don Rubin has made fundamental contributions to the study of missing data. Key features of the book include: Comprehensive coverage of an imporant area for both research and applications. Adopts a pragmatic approach to describing a wide range of intermediate and advanced statistical techniques. Covers key topics such as multiple imputation, propensity scores, instrumental variables and Bayesian inference. Includes a number of applications from the social and health sciences. Edited and authored by highly respected researchers in the area.

Bayesian Regression Modeling with INLA

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Publisher : CRC Press
ISBN 13 : 1351165755
Total Pages : 312 pages
Book Rating : 4.3/5 (511 download)

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Book Synopsis Bayesian Regression Modeling with INLA by : Xiaofeng Wang

Download or read book Bayesian Regression Modeling with INLA written by Xiaofeng Wang and published by CRC Press. This book was released on 2018-01-29 with total page 312 pages. Available in PDF, EPUB and Kindle. Book excerpt: INLA stands for Integrated Nested Laplace Approximations, which is a new method for fitting a broad class of Bayesian regression models. No samples of the posterior marginal distributions need to be drawn using INLA, so it is a computationally convenient alternative to Markov chain Monte Carlo (MCMC), the standard tool for Bayesian inference. Bayesian Regression Modeling with INLA covers a wide range of modern regression models and focuses on the INLA technique for building Bayesian models using real-world data and assessing their validity. A key theme throughout the book is that it makes sense to demonstrate the interplay of theory and practice with reproducible studies. Complete R commands are provided for each example, and a supporting website holds all of the data described in the book. An R package including the data and additional functions in the book is available to download. The book is aimed at readers who have a basic knowledge of statistical theory and Bayesian methodology. It gets readers up to date on the latest in Bayesian inference using INLA and prepares them for sophisticated, real-world work. Xiaofeng Wang is Professor of Medicine and Biostatistics at the Cleveland Clinic Lerner College of Medicine of Case Western Reserve University and a Full Staff in the Department of Quantitative Health Sciences at Cleveland Clinic. Yu Ryan Yue is Associate Professor of Statistics in the Paul H. Chook Department of Information Systems and Statistics at Baruch College, The City University of New York. Julian J. Faraway is Professor of Statistics in the Department of Mathematical Sciences at the University of Bath.

Bayesian Analysis in Statistics and Econometrics

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Publisher : John Wiley & Sons
ISBN 13 : 9780471118565
Total Pages : 610 pages
Book Rating : 4.1/5 (185 download)

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Book Synopsis Bayesian Analysis in Statistics and Econometrics by : Donald A. Berry

Download or read book Bayesian Analysis in Statistics and Econometrics written by Donald A. Berry and published by John Wiley & Sons. This book was released on 1996 with total page 610 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is a definitive work that captures the current state of knowledge of Bayesian Analysis in Statistics and Econometrics and attempts to move it forward. It covers such topics as foundations, forecasting inferential matters, regression, computation and applications.

Bayesian Regression Tree Models for Causal Inference

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Publisher :
ISBN 13 :
Total Pages : 31 pages
Book Rating : 4.:/5 (13 download)

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Book Synopsis Bayesian Regression Tree Models for Causal Inference by : P. Richard Hahn

Download or read book Bayesian Regression Tree Models for Causal Inference written by P. Richard Hahn and published by . This book was released on 2018 with total page 31 pages. Available in PDF, EPUB and Kindle. Book excerpt: This paper develops a semi-parametric Bayesian regression model for estimating heterogeneous treatment effects from observational data. Standard nonlinear regression models, which may work quite well for prediction, can yield badly biased estimates of treatment effects when fit to data with strong confounding. Our Bayesian causal forests model avoids this problem by directly incorporating an estimate of the propensity function in the specification of the response model, implicitly inducing a covariate-dependent prior on the regression function. This new parametrization also allows treatment heterogeneity to be regularized separately from the prognostic effect of control variables, making it possible to informatively “shrink to homogeneity”, in contrast to existing Bayesian non- and semi-parametric approaches.

Bayesian Data Analysis

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Publisher : CRC Press
ISBN 13 : 1439898200
Total Pages : 663 pages
Book Rating : 4.4/5 (398 download)

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Book Synopsis Bayesian Data Analysis by : Andrew Gelman

Download or read book Bayesian Data Analysis written by Andrew Gelman and published by CRC Press. This book was released on 2013-11-27 with total page 663 pages. Available in PDF, EPUB and Kindle. Book excerpt: Winner of the 2016 De Groot Prize from the International Society for Bayesian AnalysisNow in its third edition, this classic book is widely considered the leading text on Bayesian methods, lauded for its accessible, practical approach to analyzing data and solving research problems. Bayesian Data Analysis, Third Edition continues to take an applied

Bayesian Multilevel Models for Repeated Measures Data

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Publisher : Taylor & Francis
ISBN 13 : 1000869784
Total Pages : 485 pages
Book Rating : 4.0/5 (8 download)

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Book Synopsis Bayesian Multilevel Models for Repeated Measures Data by : Santiago Barreda

Download or read book Bayesian Multilevel Models for Repeated Measures Data written by Santiago Barreda and published by Taylor & Francis. This book was released on 2023-05-18 with total page 485 pages. Available in PDF, EPUB and Kindle. Book excerpt: This comprehensive book is an introduction to multilevel Bayesian models in R using brms and the Stan programming language. Featuring a series of fully worked analyses of repeated measures data, the focus is placed on active learning through the analyses of the progressively more complicated models presented throughout the book. In this book, the authors offer an introduction to statistics entirely focused on repeated measures data beginning with very simple two-group comparisons and ending with multinomial regression models with many ‘random effects’. Across 13 well-structured chapters, readers are provided with all the code necessary to run all the analyses and make all the plots in the book, as well as useful examples of how to interpret and write up their own analyses. This book provides an accessible introduction for readers in any field, with any level of statistical background. Senior undergraduate students, graduate students, and experienced researchers looking to ‘translate’ their skills with more traditional models to a Bayesian framework will benefit greatly from the lessons in this text.

Bayesian Nonparametric Methods for Causal Inference and Prediction

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Publisher :
ISBN 13 :
Total Pages : 358 pages
Book Rating : 4.:/5 (126 download)

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Book Synopsis Bayesian Nonparametric Methods for Causal Inference and Prediction by : Bret Michael Zeldow

Download or read book Bayesian Nonparametric Methods for Causal Inference and Prediction written by Bret Michael Zeldow and published by . This book was released on 2017 with total page 358 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this thesis we present novel approaches to regression and causal inference using popular Bayesian nonparametric methods. Bayesian Additive Regression Trees (BART) is a Bayesian machine learning algorithm in which the conditional distribution is modeled as a sum of regression trees. We extend BART into a semiparametric generalized linear model framework so that a portion of the covariates are modeled nonparametrically using BART and a subset of the covariates have parametric form. This presents an attractive option for research in which only a few covariates are of scientific interest but there are other covariates must be controlled for. Under certain causal assumptions, this model can be used as a structural mean model. We demonstrate this method by examining the effect of initiating certain antiretroviral medications has on mortality among HIV/HCV coinfected subjects. In later chapters, we propose a joint model for a continuous longitudinal outcome and baseline covariates using penalized splines and an enriched Dirichlet process (EDP) prior. This joint model decomposes into local linear mixed models for the outcome given the covariates and marginals for the covariates. The EDP prior that is placed on the regression parameters and the parameters on the covariates induces clustering among subjects determined by similarity in their regression parameters and nested within those clusters, sub-clusters based on similarity in the covariate space. When there are a large number of covariates, we find improved prediction over the same model with Dirichlet process (DP) priors. Since the model clusters based on regression parameters, this model also serves as a functional clustering algorithm where one does not have to choose the number of clusters beforehand. We use the method to estimate incidence rates of diabetes when longitudinal laboratory values from electronic health records are used to augment diagnostic codes for outcome identification. We later extend this work by using our EDP model in a causal inference setting using the parametric g-formula. We demonstrate this using electronic health record data consisting of subjects initiating second generation antipsychotics.

The Bayesian Paradigm of Robustness Indices of Causal Inferences

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Publisher :
ISBN 13 : 9780355752991
Total Pages : 165 pages
Book Rating : 4.7/5 (529 download)

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Book Synopsis The Bayesian Paradigm of Robustness Indices of Causal Inferences by : Tenglong Li

Download or read book The Bayesian Paradigm of Robustness Indices of Causal Inferences written by Tenglong Li and published by . This book was released on 2018 with total page 165 pages. Available in PDF, EPUB and Kindle. Book excerpt:

Hierarchical Bayesian Causal Inference and Natural Statistics Explain Heaviness Perception

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Publisher :
ISBN 13 :
Total Pages : 120 pages
Book Rating : 4.:/5 (92 download)

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Book Synopsis Hierarchical Bayesian Causal Inference and Natural Statistics Explain Heaviness Perception by : Megan Amelia Knapp Peters

Download or read book Hierarchical Bayesian Causal Inference and Natural Statistics Explain Heaviness Perception written by Megan Amelia Knapp Peters and published by . This book was released on 2014 with total page 120 pages. Available in PDF, EPUB and Kindle. Book excerpt: GOAL: The goal of this dissertation is to explore the factors contributing to humans' expectations about our interactions with objects, and perceptual experiences of these interactions, from a sensory integration and computational perspective. More specifically, this project focuses on the regular patterns that exist in the environment for properties of objects typically manipulated by human observers, and how our sensitivity to and representation of these properties contributes to the subjective, perceptual experience of an object's heaviness. These ideas are developed through the following aims: AIM 1: Sensitivity to complex environmental regularities. This aim first investigates regularities in the joint distribution of the properties of size and weight (i.e., the distribution of the hidden property of density) for liftable objects in the environment. Previous studies have identified univariate environmental regularities in the visual domain, and have demonstrated that sensitivity to such statistics can strongly influence perceptual experiences. This study series identifies a previously-unreported complex environmental statistic linking size with weight, and suggests that human observers represent and can use quantitative knowledge of this statistic to predict the weight of novel, nondescript objects. These findings imply that humans perform inference on the hidden variable of density when judging a novel object's potential weight given its size. AIM 2: How inference about hidden properties contributes to visuohaptic perception. The next series of studies examines the consequences of AIM 1's conclusions for the visuohaptic percept of an object's heaviness. It is well known that an object's perceived heaviness is inversely proportional to its volume: With weight held constant, a smaller object feels heavier than a larger object. Until now, this Size-Weight Illusion (SWI) has defied modern computational theories of perception, which rest on the notion of a Bayesian ideal observer. Through combining expectations with sensory evidence, Bayesian inference can describe much of perceptual experience across a wide variety of domains - but not the SWI. Through multiple behavioral studies and development of a computational model, this study series demonstrates that assuming human observers perform inference about both observable (size, weight) and hidden (density) variables allows this perceptual illusion to be explained by Bayesian inference.

A Bayesian Switching Model for Causal Inference with Constraints and Nonlinear Functions

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ISBN 13 : 9781124869582
Total Pages : 82 pages
Book Rating : 4.8/5 (695 download)

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Book Synopsis A Bayesian Switching Model for Causal Inference with Constraints and Nonlinear Functions by : Ni Xiao

Download or read book A Bayesian Switching Model for Causal Inference with Constraints and Nonlinear Functions written by Ni Xiao and published by . This book was released on 2011 with total page 82 pages. Available in PDF, EPUB and Kindle. Book excerpt: In this article, we generalize the switching model to allow nonlinear regression functions with constraints. We study the associated inference problems in the Bayesian framework and develop efficient Gibbs samplers for the MCMC simulation. We first analyze the linear switching model with linear constraints on the regression coefficients. We next generalize the model to the nonlinear framework. We investigate three methods: piecewise linear approximation, orthogonal polynomial expansion and B-spline approximation. By going beyond the linear model, we extend the boundary of the model's applicability, in particular, when the outcome equations and decision equation are of unknown function form. We further develop a general framework to incorporate various constraints to the model, such as monotonicity and convexity on both outcome and selection equations. These constraints are in general described by a system of linear inequalities on the regression coefficients. There are virtually no restrictions on the number of inequalities and the linear system can even be singular. These constraints are further incorporated into the Bayesian framework through conditional posterior distributions of the parameters that are truncated to certain ranges determined by other variables. For each method we provide analysis on simulated data to illustrate the model application. We further apply these models to analyze union wage premium from labor economics. Results suggest that providing appropriate constraints can improve the efficiency of parameter estimation, provide better function estimates and smooth the nonparametric estimated curve.

Parameter Redundancy and Identifiability

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Publisher : CRC Press
ISBN 13 : 1498720900
Total Pages : 273 pages
Book Rating : 4.4/5 (987 download)

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Book Synopsis Parameter Redundancy and Identifiability by : Diana Cole

Download or read book Parameter Redundancy and Identifiability written by Diana Cole and published by CRC Press. This book was released on 2020-05-10 with total page 273 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical and mathematical models are defined by parameters that describe different characteristics of those models. Ideally it would be possible to find parameter estimates for every parameter in that model, but, in some cases, this is not possible. For example, two parameters that only ever appear in the model as a product could not be estimated individually; only the product can be estimated. Such a model is said to be parameter redundant, or the parameters are described as non-identifiable. This book explains why parameter redundancy and non-identifiability is a problem and the different methods that can be used for detection, including in a Bayesian context. Key features of this book: Detailed discussion of the problems caused by parameter redundancy and non-identifiability Explanation of the different general methods for detecting parameter redundancy and non-identifiability, including symbolic algebra and numerical methods Chapter on Bayesian identifiability Throughout illustrative examples are used to clearly demonstrate each problem and method. Maple and R code are available for these examples More in-depth focus on the areas of discrete and continuous state-space models and ecological statistics, including methods that have been specifically developed for each of these areas This book is designed to make parameter redundancy and non-identifiability accessible and understandable to a wide audience from masters and PhD students to researchers, from mathematicians and statisticians to practitioners using mathematical or statistical models.

Bayesian Nonparametric Data Analysis

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Publisher : Springer
ISBN 13 : 3319189689
Total Pages : 203 pages
Book Rating : 4.3/5 (191 download)

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Book Synopsis Bayesian Nonparametric Data Analysis by : Peter Müller

Download or read book Bayesian Nonparametric Data Analysis written by Peter Müller and published by Springer. This book was released on 2015-06-17 with total page 203 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book reviews nonparametric Bayesian methods and models that have proven useful in the context of data analysis. Rather than providing an encyclopedic review of probability models, the book’s structure follows a data analysis perspective. As such, the chapters are organized by traditional data analysis problems. In selecting specific nonparametric models, simpler and more traditional models are favored over specialized ones. The discussed methods are illustrated with a wealth of examples, including applications ranging from stylized examples to case studies from recent literature. The book also includes an extensive discussion of computational methods and details on their implementation. R code for many examples is included in online software pages.

Bayesian Nonparametrics

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Publisher : Springer Science & Business Media
ISBN 13 : 0387226540
Total Pages : 311 pages
Book Rating : 4.3/5 (872 download)

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Book Synopsis Bayesian Nonparametrics by : J.K. Ghosh

Download or read book Bayesian Nonparametrics written by J.K. Ghosh and published by Springer Science & Business Media. This book was released on 2006-05-11 with total page 311 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book is the first systematic treatment of Bayesian nonparametric methods and the theory behind them. It will also appeal to statisticians in general. The book is primarily aimed at graduate students and can be used as the text for a graduate course in Bayesian non-parametrics.

Targeted Learning

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Publisher : Springer Science & Business Media
ISBN 13 : 1441997822
Total Pages : 628 pages
Book Rating : 4.4/5 (419 download)

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Book Synopsis Targeted Learning by : Mark J. van der Laan

Download or read book Targeted Learning written by Mark J. van der Laan and published by Springer Science & Business Media. This book was released on 2011-06-17 with total page 628 pages. Available in PDF, EPUB and Kindle. Book excerpt: The statistics profession is at a unique point in history. The need for valid statistical tools is greater than ever; data sets are massive, often measuring hundreds of thousands of measurements for a single subject. The field is ready to move towards clear objective benchmarks under which tools can be evaluated. Targeted learning allows (1) the full generalization and utilization of cross-validation as an estimator selection tool so that the subjective choices made by humans are now made by the machine, and (2) targeting the fitting of the probability distribution of the data toward the target parameter representing the scientific question of interest. This book is aimed at both statisticians and applied researchers interested in causal inference and general effect estimation for observational and experimental data. Part I is an accessible introduction to super learning and the targeted maximum likelihood estimator, including related concepts necessary to understand and apply these methods. Parts II-IX handle complex data structures and topics applied researchers will immediately recognize from their own research, including time-to-event outcomes, direct and indirect effects, positivity violations, case-control studies, censored data, longitudinal data, and genomic studies.

Bayesian Nonparametrics

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Publisher : Cambridge University Press
ISBN 13 : 1139484605
Total Pages : 309 pages
Book Rating : 4.1/5 (394 download)

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Book Synopsis Bayesian Nonparametrics by : Nils Lid Hjort

Download or read book Bayesian Nonparametrics written by Nils Lid Hjort and published by Cambridge University Press. This book was released on 2010-04-12 with total page 309 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bayesian nonparametrics works - theoretically, computationally. The theory provides highly flexible models whose complexity grows appropriately with the amount of data. Computational issues, though challenging, are no longer intractable. All that is needed is an entry point: this intelligent book is the perfect guide to what can seem a forbidding landscape. Tutorial chapters by Ghosal, Lijoi and Prünster, Teh and Jordan, and Dunson advance from theory, to basic models and hierarchical modeling, to applications and implementation, particularly in computer science and biostatistics. These are complemented by companion chapters by the editors and Griffin and Quintana, providing additional models, examining computational issues, identifying future growth areas, and giving links to related topics. This coherent text gives ready access both to underlying principles and to state-of-the-art practice. Specific examples are drawn from information retrieval, NLP, machine vision, computational biology, biostatistics, and bioinformatics.