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Bayesian Applications In Environmental And Ecological Studies With R And Stan
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Book Synopsis Bayesian Applications in Environmental and Ecological Studies with R and Stan by : Song S. Qian
Download or read book Bayesian Applications in Environmental and Ecological Studies with R and Stan written by Song S. Qian and published by CRC Press. This book was released on 2022-08-29 with total page 419 pages. Available in PDF, EPUB and Kindle. Book excerpt: Modern ecological and environmental sciences are dominated by observational data. As a result, traditional statistical training often leaves scientists ill-prepared for the data analysis tasks they encounter in their work. Bayesian methods provide a more robust and flexible tool for data analysis, as they enable information from different sources to be brought into the modelling process. Bayesian Applications in Evnironmental and Ecological Studies with R and Stan provides a Bayesian framework for model formulation, parameter estimation, and model evaluation in the context of analyzing environmental and ecological data. Features: An accessible overview of Bayesian methods in environmental and ecological studies Emphasizes the hypothetical deductive process, particularly model formulation Necessary background material on Bayesian inference and Monte Carlo simulation Detailed case studies, covering water quality monitoring and assessment, ecosystem response to urbanization, fisheries ecology, and more Advanced chapter on Bayesian applications, including Bayesian networks and a change point model Complete code for all examples, along with the data used in the book, are available via GitHub The book is primarily aimed at graduate students and researchers in the environmental and ecological sciences, as well as environmental management professionals. This is a group of people representing diverse subject matter fields, who could benefit from the potential power and flexibility of Bayesian methods.
Book Synopsis Bayesian Inference by : William A Link
Download or read book Bayesian Inference written by William A Link and published by Academic Press. This book was released on 2009-08-07 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: This text is written to provide a mathematically sound but accessible and engaging introduction to Bayesian inference specifically for environmental scientists, ecologists and wildlife biologists. It emphasizes the power and usefulness of Bayesian methods in an ecological context. The advent of fast personal computers and easily available software has simplified the use of Bayesian and hierarchical models . One obstacle remains for ecologists and wildlife biologists, namely the near absence of Bayesian texts written specifically for them. The book includes many relevant examples, is supported by software and examples on a companion website and will become an essential grounding in this approach for students and research ecologists. Engagingly written text specifically designed to demystify a complex subject Examples drawn from ecology and wildlife research An essential grounding for graduate and research ecologists in the increasingly prevalent Bayesian approach to inference Companion website with analytical software and examples Leading authors with world-class reputations in ecology and biostatistics
Book Synopsis Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and Stan by : Franzi Korner-Nievergelt
Download or read book Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and Stan written by Franzi Korner-Nievergelt and published by Academic Press. This book was released on 2015-04-04 with total page 328 pages. Available in PDF, EPUB and Kindle. Book excerpt: Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and STAN examines the Bayesian and frequentist methods of conducting data analyses. The book provides the theoretical background in an easy-to-understand approach, encouraging readers to examine the processes that generated their data. Including discussions of model selection, model checking, and multi-model inference, the book also uses effect plots that allow a natural interpretation of data. Bayesian Data Analysis in Ecology Using Linear Models with R, BUGS, and STAN introduces Bayesian software, using R for the simple modes, and flexible Bayesian software (BUGS and Stan) for the more complicated ones. Guiding the ready from easy toward more complex (real) data analyses ina step-by-step manner, the book presents problems and solutions—including all R codes—that are most often applicable to other data and questions, making it an invaluable resource for analyzing a variety of data types. Introduces Bayesian data analysis, allowing users to obtain uncertainty measurements easily for any derived parameter of interest Written in a step-by-step approach that allows for eased understanding by non-statisticians Includes a companion website containing R-code to help users conduct Bayesian data analyses on their own data All example data as well as additional functions are provided in the R-package blmeco
Book Synopsis Spatial Linear Models for Environmental Data by : Dale L. Zimmerman
Download or read book Spatial Linear Models for Environmental Data written by Dale L. Zimmerman and published by CRC Press. This book was released on 2024-04-17 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: Many applied researchers equate spatial statistics with prediction or mapping, but this book naturally extends linear models, which includes regression and ANOVA as pillars of applied statistics, to achieve a more comprehensive treatment of the analysis of spatially autocorrelated data. Spatial Linear Models for Environmental Data, aimed at students and professionals with a master’s level training in statistics, presents a unique, applied, and thorough treatment of spatial linear models within a statistics framework. Two subfields, one called geostatistics and the other called areal or lattice models, are extensively covered. Zimmerman and Ver Hoef present topics clearly, using many examples and simulation studies to illustrate ideas. By mimicking their examples and R code, readers will be able to fit spatial linear models to their data and draw proper scientific conclusions. Topics covered include: Exploratory methods for spatial data including outlier detection, (semi)variograms, Moran’s I, and Geary’s c. Ordinary and generalized least squares regression methods and their application to spatial data. Suitable parametric models for the mean and covariance structure of geostatistical and areal data. Model-fitting, including inference methods for explanatory variables and likelihood-based methods for covariance parameters. Practical use of spatial linear models including prediction (kriging), spatial sampling, and spatial design of experiments for solving real world problems. All concepts are introduced in a natural order and illustrated throughout the book using four datasets. All analyses, tables, and figures are completely reproducible using open-source R code provided at a GitHub site. Exercises are given at the end of each chapter, with full solutions provided on an instructor’s FTP site supplied by the publisher.
Book Synopsis Spatio-Temporal Models for Ecologists by : James Thorson
Download or read book Spatio-Temporal Models for Ecologists written by James Thorson and published by CRC Press. This book was released on 2024-02-27 with total page 294 pages. Available in PDF, EPUB and Kindle. Book excerpt: Ecological dynamics are tremendously complicated and are studied at a variety of spatial and temporal scales. Ecologists often simplify analysis by describing changes in density of individuals across a landscape, and statistical methods are advancing rapidly for studying spatio-temporal dynamics. However, spatio-temporal statistics is often presented using a set of principles that may seem very distant from ecological theory or practice. This book seeks to introduce a minimal set of principles and numerical techniques for spatio-temporal statistics that can be used to implement a wide range of real-world ecological analyses regarding animal movement, population dynamics, community composition, causal attribution, and spatial dynamics. We provide a step-by-step illustration of techniques that combine core spatial-analysis packages in R with low-level computation using Template Model Builder. Techniques are showcased using real-world data from varied ecological systems, providing a toolset for hierarchical modelling of spatio-temporal processes. Spatio-Temporal Models for Ecologists is meant for graduate level students, alongside applied and academic ecologists. Key Features: Foundational ecological principles and analyses Thoughtful and thorough ecological examples Analyses conducted using a minimal toolbox and fast computation Code using R and TMB included in the book and available online
Book Synopsis Spatio–Temporal Methods in Environmental Epidemiology with R by : Gavin Shaddick
Download or read book Spatio–Temporal Methods in Environmental Epidemiology with R written by Gavin Shaddick and published by CRC Press. This book was released on 2023-12-12 with total page 458 pages. Available in PDF, EPUB and Kindle. Book excerpt: Spatio-Temporal Methods in Environmental Epidemiology with R, like its First Edition, explores the interface between environmental epidemiology and spatio-temporal modeling. It links recent developments in spatio-temporal theory with epidemiological applications. Drawing on real-life problems, it shows how recent advances in methodology can assess the health risks associated with environmental hazards. The book's clear guidelines enable the implementation of the methodology and estimation of risks in practice. New additions to the Second Edition include: a thorough exploration of the underlying concepts behind knowledge discovery through data; a new chapter on extracting information from data using R and the tidyverse; additional material on methods for Bayesian computation, including the use of NIMBLE and Stan; new methods for performing spatio-temporal analysis and an updated chapter containing further topics. Throughout the book there are new examples, and the presentation of R code for examples has been extended. Along with these additions, the book now has a GitHub site (https://spacetime-environ.github.io/stepi2) that contains data, code and further worked examples. Features: • Explores the interface between environmental epidemiology and spatio-temporal modeling • Incorporates examples that show how spatio-temporal methodology can inform societal concerns about the effects of environmental hazards on health • Uses a Bayesian foundation on which to build an integrated approach to spatio-temporal modeling and environmental epidemiology • Discusses data analysis and topics such as data visualization, mapping, wrangling and analysis • Shows how to design networks for monitoring hazardous environmental processes and the ill effects of preferential sampling • Through the listing and application of code, shows the power of R, tidyverse, NIMBLE and Stan and other modern tools in performing complex data analysis and modeling Representing a continuing important direction in environmental epidemiology, this book – in full color throughout – underscores the increasing need to consider dependencies in both space and time when modeling epidemiological data. Readers will learn how to identify and model patterns in spatio-temporal data and how to exploit dependencies over space and time to reduce bias and inefficiency when estimating risks to health.
Book Synopsis Introduction to Hierarchical Bayesian Modeling for Ecological Data by : Eric Parent
Download or read book Introduction to Hierarchical Bayesian Modeling for Ecological Data written by Eric Parent and published by CRC Press. This book was released on 2012-08-21 with total page 429 pages. Available in PDF, EPUB and Kindle. Book excerpt: Making statistical modeling and inference more accessible to ecologists and related scientists, Introduction to Hierarchical Bayesian Modeling for Ecological Data gives readers a flexible and effective framework to learn about complex ecological processes from various sources of data. It also helps readers get started on building their own statistical models. The text begins with simple models that progressively become more complex and realistic through explanatory covariates and intermediate hidden states variables. When fitting the models to data, the authors gradually present the concepts and techniques of the Bayesian paradigm from a practical point of view using real case studies. They emphasize how hierarchical Bayesian modeling supports multidimensional models involving complex interactions between parameters and latent variables. Data sets, exercises, and R and WinBUGS codes are available on the authors’ website. This book shows how Bayesian statistical modeling provides an intuitive way to organize data, test ideas, investigate competing hypotheses, and assess degrees of confidence of predictions. It also illustrates how conditional reasoning can dismantle a complex reality into more understandable pieces. As conditional reasoning is intimately linked with Bayesian thinking, considering hierarchical models within the Bayesian setting offers a unified and coherent framework for modeling, estimation, and prediction.
Book Synopsis Statistical Computation for Environmental Sciences in R by : James S. Clark
Download or read book Statistical Computation for Environmental Sciences in R written by James S. Clark and published by Princeton University Press. This book was released on 2007-06-03 with total page 150 pages. Available in PDF, EPUB and Kindle. Book excerpt: Laboratory manual for: Models for ecological data.
Book Synopsis Bayesian Hierarchical Models by : Peter D. Congdon
Download or read book Bayesian Hierarchical Models written by Peter D. Congdon and published by CRC Press. This book was released on 2019-09-16 with total page 506 pages. Available in PDF, EPUB and Kindle. Book excerpt: An intermediate-level treatment of Bayesian hierarchical models and their applications, this book demonstrates the advantages of a Bayesian approach to data sets involving inferences for collections of related units or variables, and in methods where parameters can be treated as random collections. Through illustrative data analysis and attention to statistical computing, this book facilitates practical implementation of Bayesian hierarchical methods. The new edition is a revision of the book Applied Bayesian Hierarchical Methods. It maintains a focus on applied modelling and data analysis, but now using entirely R-based Bayesian computing options. It has been updated with a new chapter on regression for causal effects, and one on computing options and strategies. This latter chapter is particularly important, due to recent advances in Bayesian computing and estimation, including the development of rjags and rstan. It also features updates throughout with new examples. The examples exploit and illustrate the broader advantages of the R computing environment, while allowing readers to explore alternative likelihood assumptions, regression structures, and assumptions on prior densities. Features: Provides a comprehensive and accessible overview of applied Bayesian hierarchical modelling Includes many real data examples to illustrate different modelling topics R code (based on rjags, jagsUI, R2OpenBUGS, and rstan) is integrated into the book, emphasizing implementation Software options and coding principles are introduced in new chapter on computing Programs and data sets available on the book’s website
Book Synopsis Bayesian GLMs in R for Ecology by : Mark Warren
Download or read book Bayesian GLMs in R for Ecology written by Mark Warren and published by Independently Published. This book was released on 2021-10-16 with total page 232 pages. Available in PDF, EPUB and Kindle. Book excerpt: A practical handbook to introduce Bayesian general and generalised linear models (GLMs) to ecologists using R. The book is aimed at advanced undergraduate and post-graduate research students and provides access to R script and data for each analysis presented. The concepts behind Bayesian modelling are explained, along with comprehensive instructions of how to fit Bayesian models as well as highlighting the potential pitfalls to this approach.
Book Synopsis Bayesian Methods for Ecology by : Michael A. McCarthy
Download or read book Bayesian Methods for Ecology written by Michael A. McCarthy and published by Cambridge University Press. This book was released on 2007-05-10 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt: The interest in using Bayesian methods in ecology is increasing, however many ecologists have difficulty with conducting the required analyses. McCarthy bridges that gap, using a clear and accessible style. The text also incorporates case studies to demonstrate mark-recapture analysis, development of population models and the use of subjective judgement. The advantages of Bayesian methods, are also described here, for example, the incorporation of any relevant prior information and the ability to assess the evidence in favour of competing hypotheses. Free software is available as well as an accompanying web-site containing the data files and WinBUGS codes. Bayesian Methods for Ecology will appeal to academic researchers, upper undergraduate and graduate students of Ecology.
Book Synopsis Hierarchical Modelling for the Environmental Sciences by : James S. Clark
Download or read book Hierarchical Modelling for the Environmental Sciences written by James S. Clark and published by OUP Oxford. This book was released on 2006-05-04 with total page 216 pages. Available in PDF, EPUB and Kindle. Book excerpt: New statistical tools are changing the ways in which scientists analyze and interpret data and models. Many of these are emerging as a result of the wide availability of inexpensive, high speed computational power. In particular, hierarchical Bayes and Markov Chain Monte Carlo methods for analysis provide consistent framework for inference and prediction where information is heterogeneous and uncertain, processes are complex, and responses depend on scale. Nowhere are these methods more promising than in the environmental sciences. Models have developed rapidly, and there is now a requirement for a clear exposition of the methodology through to application for a range of environmental challenges.
Book Synopsis Bayesian Statistics for Beginners by : Therese M. Donovan
Download or read book Bayesian Statistics for Beginners written by Therese M. Donovan and published by Oxford University Press, USA. This book was released on 2019 with total page 430 pages. Available in PDF, EPUB and Kindle. Book excerpt: This is an entry-level book on Bayesian statistics written in a casual, and conversational tone. The authors walk a reader through many sample problems step-by-step to provide those with little background in math or statistics with the vocabulary, notation, and understanding of the calculations used in many Bayesian problems.
Book Synopsis Ecological Models and Data in R by : Benjamin M. Bolker
Download or read book Ecological Models and Data in R written by Benjamin M. Bolker and published by Princeton University Press. This book was released on 2008-07-21 with total page 408 pages. Available in PDF, EPUB and Kindle. Book excerpt: Introduction and background; Exploratory data analysis and graphics; Deterministic functions for ecological modeling; Probability and stochastic distributions for ecological modeling; Stochatsic simulation and power analysis; Likelihood and all that; Optimization and all that; Likelihood examples; Standar statistics revisited; Modeling variance; Dynamic models.
Book Synopsis Statistical Rethinking by : Richard McElreath
Download or read book Statistical Rethinking written by Richard McElreath and published by CRC Press. This book was released on 2018-01-03 with total page 489 pages. Available in PDF, EPUB and Kindle. Book excerpt: Statistical Rethinking: A Bayesian Course with Examples in R and Stan builds readers’ knowledge of and confidence in statistical modeling. Reflecting the need for even minor programming in today’s model-based statistics, the book pushes readers to perform step-by-step calculations that are usually automated. This unique computational approach ensures that readers understand enough of the details to make reasonable choices and interpretations in their own modeling work. The text presents generalized linear multilevel models from a Bayesian perspective, relying on a simple logical interpretation of Bayesian probability and maximum entropy. It covers from the basics of regression to multilevel models. The author also discusses measurement error, missing data, and Gaussian process models for spatial and network autocorrelation. By using complete R code examples throughout, this book provides a practical foundation for performing statistical inference. Designed for both PhD students and seasoned professionals in the natural and social sciences, it prepares them for more advanced or specialized statistical modeling. Web Resource The book is accompanied by an R package (rethinking) that is available on the author’s website and GitHub. The two core functions (map and map2stan) of this package allow a variety of statistical models to be constructed from standard model formulas.
Book Synopsis Handbook of Environmental and Ecological Statistics by : Alan E. Gelfand
Download or read book Handbook of Environmental and Ecological Statistics written by Alan E. Gelfand and published by CRC Press. This book was released on 2019-01-15 with total page 679 pages. Available in PDF, EPUB and Kindle. Book excerpt: This handbook focuses on the enormous literature applying statistical methodology and modelling to environmental and ecological processes. The 21st century statistics community has become increasingly interdisciplinary, bringing a large collection of modern tools to all areas of application in environmental processes. In addition, the environmental community has substantially increased its scope of data collection including observational data, satellite-derived data, and computer model output. The resultant impact in this latter community has been substantial; no longer are simple regression and analysis of variance methods adequate. The contribution of this handbook is to assemble a state-of-the-art view of this interface. Features: An internationally regarded editorial team. A distinguished collection of contributors. A thoroughly contemporary treatment of a substantial interdisciplinary interface. Written to engage both statisticians as well as quantitative environmental researchers. 34 chapters covering methodology, ecological processes, environmental exposure, and statistical methods in climate science.
Book Synopsis Statistical Modeling for Naturalists by : Pedro F. Quintana Ascencio
Download or read book Statistical Modeling for Naturalists written by Pedro F. Quintana Ascencio and published by Cambridge Scholars Publishing. This book was released on 2022-01-31 with total page 210 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book will allow naturalists, nature stewards, and graduate students to appreciate and comprehend basic statistical concepts as a bridge to more complex themes relevant to their daily work. Although there are excellent sources on more specialized analytical topics relevant to naturalists, this introductory book makes a connection with the experience and needs of field practitioners. It uses aspects of the natural history of the Florida scrub relevant for conservation and management as examples of analytical issues pertinent to the naturalist in a broader context. Each chapter identifies important ecological questions and then provides approaches to evaluate data, focusing on the analytical decision-making process. The book guides the reader on frequently overlooked aspects such as the understanding of model assumptions, alternative model specifications, model output interpretation, and model limitations.
