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Algorithms On Strings Trees And Sequences
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Book Synopsis Algorithms on Strings, Trees and Sequences by : Dan Gusfield
Download or read book Algorithms on Strings, Trees and Sequences written by Dan Gusfield and published by Cambridge University Press. This book was released on 1997-05-28 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: String algorithms are a traditional area of study in computer science. In recent years their importance has grown dramatically with the huge increase of electronically stored text and of molecular sequence data (DNA or protein sequences) produced by various genome projects. This 1997 book is a general text on computer algorithms for string processing. In addition to pure computer science, the book contains extensive discussions on biological problems that are cast as string problems, and on methods developed to solve them. It emphasises the fundamental ideas and techniques central to today's applications. New approaches to this complex material simplify methods that up to now have been for the specialist alone. With over 400 exercises to reinforce the material and develop additional topics, the book is suitable as a text for graduate or advanced undergraduate students in computer science, computational biology, or bio-informatics. Its discussion of current algorithms and techniques also makes it a reference for professionals.
Book Synopsis Algorithms on Strings, Trees, and Sequences by : Dan Gusfield
Download or read book Algorithms on Strings, Trees, and Sequences written by Dan Gusfield and published by Cambridge University Press. This book was released on 1997-05-28 with total page 556 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book describes a range of string problems in computer science and molecular biology and the algorithms developed to solve them.
Book Synopsis Algorithms on Strings, Trees and Sequences by : Dan Gusfield
Download or read book Algorithms on Strings, Trees and Sequences written by Dan Gusfield and published by . This book was released on 2014-05-14 with total page 553 pages. Available in PDF, EPUB and Kindle. Book excerpt: This 1997 book describes a range of string problems in computer science and molecular biology and the algorithms developed to solve them.
Book Synopsis Algorithms on Strings by : Maxime Crochemore
Download or read book Algorithms on Strings written by Maxime Crochemore and published by Cambridge University Press. This book was released on 2007-04-09 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: The book is intended for lectures on string processes and pattern matching in Master's courses of computer science and software engineering curricula. The details of algorithms are given with correctness proofs and complexity analysis, which make them ready to implement. Algorithms are described in a C-like language. The book is also a reference for students in computational linguistics or computational biology. It presents examples of questions related to the automatic processing of natural language, to the analysis of molecular sequences, and to the management of textual databases.
Book Synopsis Integer Linear Programming in Computational and Systems Biology by : Dan Gusfield
Download or read book Integer Linear Programming in Computational and Systems Biology written by Dan Gusfield and published by Cambridge University Press. This book was released on 2019-06-13 with total page 431 pages. Available in PDF, EPUB and Kindle. Book excerpt: This hands-on tutorial text for non-experts demonstrates biological applications of a versatile modeling and optimization technique.
Book Synopsis An Introduction to Bioinformatics Algorithms by : Neil C. Jones
Download or read book An Introduction to Bioinformatics Algorithms written by Neil C. Jones and published by MIT Press. This book was released on 2004-08-06 with total page 460 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introductory text that emphasizes the underlying algorithmic ideas that are driving advances in bioinformatics. This introductory text offers a clear exposition of the algorithmic principles driving advances in bioinformatics. Accessible to students in both biology and computer science, it strikes a unique balance between rigorous mathematics and practical techniques, emphasizing the ideas underlying algorithms rather than offering a collection of apparently unrelated problems. The book introduces biological and algorithmic ideas together, linking issues in computer science to biology and thus capturing the interest of students in both subjects. It demonstrates that relatively few design techniques can be used to solve a large number of practical problems in biology, and presents this material intuitively. An Introduction to Bioinformatics Algorithms is one of the first books on bioinformatics that can be used by students at an undergraduate level. It includes a dual table of contents, organized by algorithmic idea and biological idea; discussions of biologically relevant problems, including a detailed problem formulation and one or more solutions for each; and brief biographical sketches of leading figures in the field. These interesting vignettes offer students a glimpse of the inspirations and motivations for real work in bioinformatics, making the concepts presented in the text more concrete and the techniques more approachable.PowerPoint presentations, practical bioinformatics problems, sample code, diagrams, demonstrations, and other materials can be found at the Author's website.
Book Synopsis The Design and Analysis of Algorithms by : Dexter C. Kozen
Download or read book The Design and Analysis of Algorithms written by Dexter C. Kozen and published by Springer Science & Business Media. This book was released on 2012-12-06 with total page 327 pages. Available in PDF, EPUB and Kindle. Book excerpt: These are my lecture notes from CS681: Design and Analysis of Algo rithms, a one-semester graduate course I taught at Cornell for three consec utive fall semesters from '88 to '90. The course serves a dual purpose: to cover core material in algorithms for graduate students in computer science preparing for their PhD qualifying exams, and to introduce theory students to some advanced topics in the design and analysis of algorithms. The material is thus a mixture of core and advanced topics. At first I meant these notes to supplement and not supplant a textbook, but over the three years they gradually took on a life of their own. In addition to the notes, I depended heavily on the texts • A. V. Aho, J. E. Hopcroft, and J. D. Ullman, The Design and Analysis of Computer Algorithms. Addison-Wesley, 1975. • M. R. Garey and D. S. Johnson, Computers and Intractibility: A Guide to the Theory of NP-Completeness. w. H. Freeman, 1979. • R. E. Tarjan, Data Structures and Network Algorithms. SIAM Regional Conference Series in Applied Mathematics 44, 1983. and still recommend them as excellent references.
Book Synopsis Text Algorithms by : Maxime Crochemore
Download or read book Text Algorithms written by Maxime Crochemore and published by Maxime Crochemore. This book was released on 1994 with total page 396 pages. Available in PDF, EPUB and Kindle. Book excerpt: This much-needed book on the design of algorithms and data structures for text processing emphasizes both theoretical foundations and practical applications. It is intended to serve both as a textbook for courses on algorithm design, especially those related to text processing, and as a reference for computer science professionals. The work takes a unique approach, one that goes more deeply into its topic than other more general books. It contains both classical algorithms and recent results of research on the subject. The book is the first text to contain a collection of a wide range of text algorithms, many of them quite new and appearing here for the first time. Other algorithms, while known by reputation, have never been published in the journal literature. Two such important algorithms are those of Karp, Miller and Rosenberg, and that of Weiner. Here they are presented together for the fist time. The core of the book is the material on suffix trees and subword graphs, applications of these data structures, new approaches to time-space optimal string-matching, and text compression. Also covered are basic parallel algorithms for text problems. Applications of all these algorithms are given for problems involving data retrieval systems, treatment of natural languages, investigation of genomes, data compression software, and text processing tools. From the theoretical point of view. the book is a goldmine of paradigms for the development of efficient algorithms, providing the necessary foundation to creating practical software dealing with sequences. A crucial point in the authors' approach is the development of a methodology for presenting text algorithms so they can be fully understood. Throughout, the book emphasizes the efficiency of algorithms, holding that the essence of their usefulness depends on it. This is especially important since the algorithms described here will find application in "Big Science" areas like molecular sequence analysis where the explosive growth of data has caused problems for the current generation of software. Finally, with its development of theoretical background, the book can be considered as a mathematical foundation for the analysis and production of text processing algorithms.
Book Synopsis Proceedings of International Joint Conference on Computational Intelligence by : Mohammad Shorif Uddin
Download or read book Proceedings of International Joint Conference on Computational Intelligence written by Mohammad Shorif Uddin and published by Springer. This book was released on 2019-07-03 with total page 749 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book gathers outstanding research papers presented at the International Joint Conference on Computational Intelligence (IJCCI 2018), which was held at Daffodil International University on 14–15 December 2018. The topics covered include: collective intelligence, soft computing, optimization, cloud computing, machine learning, intelligent software, robotics, data science, data security, big data analytics, and signal and natural language processing.
Book Synopsis Average Case Analysis of Algorithms on Sequences by : Wojciech Szpankowski
Download or read book Average Case Analysis of Algorithms on Sequences written by Wojciech Szpankowski and published by John Wiley & Sons. This book was released on 2011-10-14 with total page 580 pages. Available in PDF, EPUB and Kindle. Book excerpt: A timely book on a topic that has witnessed a surge of interest over the last decade, owing in part to several novel applications, most notably in data compression and computational molecular biology. It describes methods employed in average case analysis of algorithms, combining both analytical and probabilistic tools in a single volume. * Tools are illustrated through problems on words with applications to molecular biology, data compression, security, and pattern matching. * Includes chapters on algorithms and data structures on words, probabilistic and analytical models, inclusion-exclusion principles, first and second moment methods, subadditive ergodic theorem and large deviations, elements of information theory, generating functions, complex asymptotic methods, Mellin transform and its applications, and analytic poissonization and depoissonization. * Written by an established researcher with a strong international reputation in the field.
Download or read book ReCombinatorics written by Dan Gusfield and published by MIT Press. This book was released on 2014-07-03 with total page 601 pages. Available in PDF, EPUB and Kindle. Book excerpt: When a Philadelphia girl intercepts a message about an impending British attack against her father's regiment, commanded by General Washington, in White Marsh, she travels alone by horseback to warn the Patriot army.
Book Synopsis Biological Sequence Analysis by : Richard Durbin
Download or read book Biological Sequence Analysis written by Richard Durbin and published by . This book was released on 1998 with total page 0 pages. Available in PDF, EPUB and Kindle. Book excerpt: Presents up-to-date computer methods for analysing DNA, RNA and protein sequences.
Book Synopsis Spanning Trees and Optimization Problems by : Bang Ye Wu
Download or read book Spanning Trees and Optimization Problems written by Bang Ye Wu and published by CRC Press. This book was released on 2004-01-27 with total page 200 pages. Available in PDF, EPUB and Kindle. Book excerpt: The design of approximation algorithms for spanning tree problems has become an exciting and important area of theoretical computer science and also plays a significant role in emerging fields such as biological sequence alignments and evolutionary tree construction. While work in this field remains quite active, the time has come to collect under
Book Synopsis Jewels Of Stringology: Text Algorithms by : Maxime Crochemore
Download or read book Jewels Of Stringology: Text Algorithms written by Maxime Crochemore and published by World Scientific. This book was released on 2002-09-16 with total page 320 pages. Available in PDF, EPUB and Kindle. Book excerpt: The term “stringology” is a popular nickname for text algorithms, or algorithms on strings. This book deals with the most basic algorithms in the area. Most of them can be viewed as “algorithmic jewels” and deserve reader-friendly presentation. One of the main aims of the book is to present several of the most celebrated algorithms in a simple way by omitting obscuring details and separating algorithmic structure from combinatorial theoretical background. The book reflects the relationships between applications of text-algorithmic techniques and the classification of algorithms according to the measures of complexity considered. The text can be viewed as a parade of algorithms in which the main purpose is to discuss the foundations of the algorithms and their interconnections. One can partition the algorithmic problems discussed into practical and theoretical problems. Certainly, string matching and data compression are in the former class, while most problems related to symmetries and repetitions in texts are in the latter. However, all the problems are interesting from an algorithmic point of view and enable the reader to appreciate the importance of combinatorics on words as a tool in the design of efficient text algorithms.In most textbooks on algorithms and data structures, the presentation of efficient algorithms on words is quite short as compared to issues in graph theory, sorting, searching, and some other areas. At the same time, there are many presentations of interesting algorithms on words accessible only in journals and in a form directed mainly at specialists. This book fills the gap in the book literature on algorithms on words, and brings together the many results presently dispersed in the masses of journal articles. The presentation is reader-friendly; many examples and about two hundred figures illustrate nicely the behaviour of otherwise very complex algorithms.
Book Synopsis Combinatorial Algorithms on Words by : Alberto Apostolico
Download or read book Combinatorial Algorithms on Words written by Alberto Apostolico and published by Springer Science & Business Media. This book was released on 2013-06-29 with total page 354 pages. Available in PDF, EPUB and Kindle. Book excerpt: Combinatorial Algorithms on Words refers to the collection of manipulations of strings of symbols (words) - not necessarily from a finite alphabet - that exploit the combinatorial properties of the logical/physical input arrangement to achieve efficient computational performances. The model of computation may be any of the established serial paradigms (e.g. RAM's, Turing Machines), or one of the emerging parallel models (e.g. PRAM ,WRAM, Systolic Arrays, CCC). This book focuses on some of the accomplishments of recent years in such disparate areas as pattern matching, data compression, free groups, coding theory, parallel and VLSI computation, and symbolic dynamics; these share a common flavor, yet ltave not been examined together in the past. In addition to being theoretically interest ing, these studies have had significant applications. It happens that these works have all too frequently been carried out in isolation, with contributions addressing similar issues scattered throughout a rather diverse body of literature. We felt that it would be advantageous to both current and future researchers to collect this work in a sin gle reference. It should be clear that the book's emphasis is on aspects of combinatorics and com plexity rather than logic, foundations, and decidability. In view of the large body of research and the degree of unity already achieved by studies in the theory of auto mata and formal languages, we have allocated very little space to them.
Book Synopsis 125 Problems in Text Algorithms by : Maxime Crochemore
Download or read book 125 Problems in Text Algorithms written by Maxime Crochemore and published by Cambridge University Press. This book was released on 2021-07 with total page 345 pages. Available in PDF, EPUB and Kindle. Book excerpt: Worked problems offer an interesting way to learn and practice with key concepts of string algorithms and combinatorics on words.
Book Synopsis String Processing and Information Retrieval by : Nieves R. Brisaboa
Download or read book String Processing and Information Retrieval written by Nieves R. Brisaboa and published by Springer Nature. This book was released on 2019-10-05 with total page 537 pages. Available in PDF, EPUB and Kindle. Book excerpt: This volume constitutes the refereed proceedings of the 26th International Symposium on String Processing and Information Retrieval, SPIRE 2019, held in Segovia, Spain, in October 2019. The 28 full papers and 8 short papers presented in this volume were carefully reviewed and selected from 59 submissions. They cover topics such as: data compression; information retrieval; string algorithms; algorithms; computational biology; indexing and compression; and compressed data structures.
