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Algorithmic Aspects Of Some Combinatorial Problems In Bioinformatics
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Author :Hans-Joachim Böckenhauer Publisher :Springer Science & Business Media ISBN 13 :354071913X Total Pages :395 pages Book Rating :4.5/5 (47 download)
Book Synopsis Algorithmic Aspects of Bioinformatics by : Hans-Joachim Böckenhauer
Download or read book Algorithmic Aspects of Bioinformatics written by Hans-Joachim Böckenhauer and published by Springer Science & Business Media. This book was released on 2007-06-06 with total page 395 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book introduces some key problems in bioinformatics, discusses the models used to formally describe these problems, and analyzes the algorithmic approaches used to solve them. After introducing the basics of molecular biology and algorithmics, Part I explains string algorithms and alignments; Part II details the field of physical mapping and DNA sequencing; and Part III examines the application of algorithmics to the analysis of biological data. Exciting application examples include predicting the spatial structure of proteins, and computing haplotypes from genotype data. Figures, chapter summaries, detailed derivations, and examples, are provided.
Book Synopsis Bioinformatics Algorithms by : Ion Mandoiu
Download or read book Bioinformatics Algorithms written by Ion Mandoiu and published by John Wiley & Sons. This book was released on 2008-02-25 with total page 528 pages. Available in PDF, EPUB and Kindle. Book excerpt: Presents algorithmic techniques for solving problems in bioinformatics, including applications that shed new light on molecular biology This book introduces algorithmic techniques in bioinformatics, emphasizing their application to solving novel problems in post-genomic molecular biology. Beginning with a thought-provoking discussion on the role of algorithms in twenty-first-century bioinformatics education, Bioinformatics Algorithms covers: General algorithmic techniques, including dynamic programming, graph-theoretical methods, hidden Markov models, the fast Fourier transform, seeding, and approximation algorithms Algorithms and tools for genome and sequence analysis, including formal and approximate models for gene clusters, advanced algorithms for non-overlapping local alignments and genome tilings, multiplex PCR primer set selection, and sequence/network motif finding Microarray design and analysis, including algorithms for microarray physical design, missing value imputation, and meta-analysis of gene expression data Algorithmic issues arising in the analysis of genetic variation across human population, including computational inference of haplotypes from genotype data and disease association search in case/control epidemiologic studies Algorithmic approaches in structural and systems biology, including topological and structural classification in biochemistry, and prediction of protein-protein and domain-domain interactions Each chapter begins with a self-contained introduction to a computational problem; continues with a brief review of the existing literature on the subject and an in-depth description of recent algorithmic and methodological developments; and concludes with a brief experimental study and a discussion of open research challenges. This clear and approachable presentation makes the book appropriate for researchers, practitioners, and graduate students alike.
Book Synopsis Combinatorics of Genome Rearrangements by : Guillaume Fertin
Download or read book Combinatorics of Genome Rearrangements written by Guillaume Fertin and published by MIT Press. This book was released on 2009 with total page 305 pages. Available in PDF, EPUB and Kindle. Book excerpt: A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically oriented but offering biological explanations when required. From one cell to another, from one individual to another, and from one species to another, the content of DNA molecules is often similar. The organization of these molecules, however, differs dramatically, and the mutations that affect this organization are known as genome rearrangements. Combinatorial methods are used to reconstruct putative rearrangement scenarios in order to explain the evolutionary history of a set of species, often formalizing the evolutionary events that can explain the multiple combinations of observed genomes as combinatorial optimization problems. This book offers the first comprehensive survey of this rapidly expanding application of combinatorial optimization. It can be used as a reference for experienced researchers or as an introductory text for a broader audience. Genome rearrangement problems have proved so interesting from a combinatorial point of view that the field now belongs as much to mathematics as to biology. This book takes a mathematically oriented approach, but provides biological background when necessary. It presents a series of models, beginning with the simplest (which is progressively extended by dropping restrictions), each constructing a genome rearrangement problem. The book also discusses an important generalization of the basic problem known as the median problem, surveys attempts to reconstruct the relationships between genomes with phylogenetic trees, and offers a collection of summaries and appendixes with useful additional information.
Book Synopsis Stochastic Local Search by : Holger H. Hoos
Download or read book Stochastic Local Search written by Holger H. Hoos and published by Morgan Kaufmann. This book was released on 2005 with total page 678 pages. Available in PDF, EPUB and Kindle. Book excerpt: Stochastic local search (SLS) algorithms are among the most prominent and successful techniques for solving computationally difficult problems. Offering a systematic treatment of SLS algorithms, this book examines the general concepts and specific instances of SLS algorithms and considers their development, analysis and application.
Book Synopsis Automata, Languages and Programming by : Luca Aceto
Download or read book Automata, Languages and Programming written by Luca Aceto and published by Springer. This book was released on 2011-06-21 with total page 825 pages. Available in PDF, EPUB and Kindle. Book excerpt: The two-volume set LNCS 6755 and LNCS 6756 constitutes the refereed proceedings of the 38th International Colloquium on Automata, Languages and Programming, ICALP 2011, held in Zürich, Switzerland, in July 2011. The 114 revised full papers (68 papers for track A, 29 for track B, and 17 for track C) presented together with 4 invited talks, 3 best student papers, and 3 best papers were carefully reviewed and selected from a total of 398 submissions. The papers are grouped in three major tracks on algorithms, complexity and games; on logic, semantics, automata, and theory of programming; as well as on foundations of networked computation: models, algorithms and information management.
Book Synopsis Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R by : Gabriel Valiente
Download or read book Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R written by Gabriel Valiente and published by CRC Press. This book was released on 2009-04-08 with total page 370 pages. Available in PDF, EPUB and Kindle. Book excerpt: Emphasizing the search for patterns within and between biological sequences, trees, and graphs, Combinatorial Pattern Matching Algorithms in Computational Biology Using Perl and R shows how combinatorial pattern matching algorithms can solve computational biology problems that arise in the analysis of genomic, transcriptomic, proteomic, metabolomic
Book Synopsis Bioinformatics Algorithms by : Phillip Compeau
Download or read book Bioinformatics Algorithms written by Phillip Compeau and published by . This book was released on 1986-06 with total page pages. Available in PDF, EPUB and Kindle. Book excerpt: Bioinformatics Algorithms: an Active Learning Approach is one of the first textbooks to emerge from the recent Massive Online Open Course (MOOC) revolution. A light-hearted and analogy-filled companion to the authors' acclaimed online course (http://coursera.org/course/bioinformatics), this book presents students with a dynamic approach to learning bioinformatics. It strikes a unique balance between practical challenges in modern biology and fundamental algorithmic ideas, thus capturing the interest of students of biology and computer science students alike.Each chapter begins with a central biological question, such as "Are There Fragile Regions in the Human Genome?" or "Which DNA Patterns Play the Role of Molecular Clocks?" and then steadily develops the algorithmic sophistication required to answer this question. Hundreds of exercises are incorporated directly into the text as soon as they are needed; readers can test their knowledge through automated coding challenges on Rosalind (http://rosalind.info), an online platform for learning bioinformatics.The textbook website (http://bioinformaticsalgorithms.org) directs readers toward additional educational materials, including video lectures and PowerPoint slides.
Book Synopsis Algorithms in Bioinformatics by : Dan Brown
Download or read book Algorithms in Bioinformatics written by Dan Brown and published by Springer. This book was released on 2014-08-15 with total page 379 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 14th International Workshop on Algorithms in Bioinformatics, WABI 2014, held in Wroclaw, Poland, in September 2014. WABI 2014 was one of seven conferences that were organized as part of ALGO 2014. WABI is an annual conference series on all aspects of algorithms and data structure in molecular biology, genomics and phylogeny data analysis. The 26 full papers presented together with a short abstract were carefully reviewed and selected from 61 submissions. The selected papers cover a wide range of topics from sequence and genome analysis through phylogeny reconstruction and networks to mass spectrometry data analysis.
Book Synopsis Frontiers in Algorithmics and Algorithmic Aspects in Information and Management by : Mikhail Atallah
Download or read book Frontiers in Algorithmics and Algorithmic Aspects in Information and Management written by Mikhail Atallah and published by Springer. This book was released on 2011-05-30 with total page 400 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the joint refereed proceedings of the 5th International Frontiers of Algorithmics Workshop, FAW 2011, and the 7th International Conference on Algorithmic Aspects in Information and Management, AAIM 2011, jointly held in Jinhua, China, in May 2011. The 35 revised full papers presented together with 4 invited talks were carefully reviewed and selected from 92 submissions. The papers cover a wide range of topics in the areas of algorithmics, combinatorial optimization and their applications presenting current trends of research.
Book Synopsis Algorithms in Bioinformatics by : Martin Frith
Download or read book Algorithms in Bioinformatics written by Martin Frith and published by Springer. This book was released on 2016-08-08 with total page 336 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the 16th International Workshop on Algorithms in Bioinformatics, WABI 2016, held in Aarhus, Denmark. The 25 full papers together with 2 invited talks presented were carefully reviewed and selected from 54 submissions. The selected papers cover a wide range of topics from networks, tophylogenetic studies, sequence and genome analysis, comparative genomics, and mass spectrometry data analysis.
Book Synopsis An Introduction to Bioinformatics Algorithms by : Neil C. Jones
Download or read book An Introduction to Bioinformatics Algorithms written by Neil C. Jones and published by MIT Press. This book was released on 2004-08-06 with total page 460 pages. Available in PDF, EPUB and Kindle. Book excerpt: An introductory text that emphasizes the underlying algorithmic ideas that are driving advances in bioinformatics. This introductory text offers a clear exposition of the algorithmic principles driving advances in bioinformatics. Accessible to students in both biology and computer science, it strikes a unique balance between rigorous mathematics and practical techniques, emphasizing the ideas underlying algorithms rather than offering a collection of apparently unrelated problems. The book introduces biological and algorithmic ideas together, linking issues in computer science to biology and thus capturing the interest of students in both subjects. It demonstrates that relatively few design techniques can be used to solve a large number of practical problems in biology, and presents this material intuitively. An Introduction to Bioinformatics Algorithms is one of the first books on bioinformatics that can be used by students at an undergraduate level. It includes a dual table of contents, organized by algorithmic idea and biological idea; discussions of biologically relevant problems, including a detailed problem formulation and one or more solutions for each; and brief biographical sketches of leading figures in the field. These interesting vignettes offer students a glimpse of the inspirations and motivations for real work in bioinformatics, making the concepts presented in the text more concrete and the techniques more approachable.PowerPoint presentations, practical bioinformatics problems, sample code, diagrams, demonstrations, and other materials can be found at the Author's website.
Book Synopsis Next Generation Sequencing by : Jerzy Kulski
Download or read book Next Generation Sequencing written by Jerzy Kulski and published by BoD – Books on Demand. This book was released on 2016-01-14 with total page 466 pages. Available in PDF, EPUB and Kindle. Book excerpt: Next generation sequencing (NGS) has surpassed the traditional Sanger sequencing method to become the main choice for large-scale, genome-wide sequencing studies with ultra-high-throughput production and a huge reduction in costs. The NGS technologies have had enormous impact on the studies of structural and functional genomics in all the life sciences. In this book, Next Generation Sequencing Advances, Applications and Challenges, the sixteen chapters written by experts cover various aspects of NGS including genomics, transcriptomics and methylomics, the sequencing platforms, and the bioinformatics challenges in processing and analysing huge amounts of sequencing data. Following an overview of the evolution of NGS in the brave new world of omics, the book examines the advances and challenges of NGS applications in basic and applied research on microorganisms, agricultural plants and humans. This book is of value to all who are interested in DNA sequencing and bioinformatics across all fields of the life sciences.
Book Synopsis Multi-Objective Optimization in Theory and Practice II: Metaheuristic Algorithms by : André A. Keller
Download or read book Multi-Objective Optimization in Theory and Practice II: Metaheuristic Algorithms written by André A. Keller and published by Bentham Science Publishers. This book was released on 2019-03-28 with total page 310 pages. Available in PDF, EPUB and Kindle. Book excerpt: Multi-Objective Optimization in Theory and Practice is a simplified two-part approach to multi-objective optimization (MOO) problems. This second part focuses on the use of metaheuristic algorithms in more challenging practical cases. The book includes ten chapters that cover several advanced MOO techniques. These include the determination of Pareto-optimal sets of solutions, metaheuristic algorithms, genetic search algorithms and evolution strategies, decomposition algorithms, hybridization of different metaheuristics, and many-objective (more than three objectives) optimization and parallel computation. The final section of the book presents information about the design and types of fifty test problems for which the Pareto-optimal front is approximated. For each of them, the package NSGA-II is used to approximate the Pareto-optimal front. It is an essential handbook for students and teachers involved in advanced optimization courses in engineering, information science and mathematics degree programs.
Book Synopsis Computer Vision – ECCV 2020 by : Andrea Vedaldi
Download or read book Computer Vision – ECCV 2020 written by Andrea Vedaldi and published by Springer Nature. This book was released on 2020-11-02 with total page 789 pages. Available in PDF, EPUB and Kindle. Book excerpt: The 30-volume set, comprising the LNCS books 12346 until 12375, constitutes the refereed proceedings of the 16th European Conference on Computer Vision, ECCV 2020, which was planned to be held in Glasgow, UK, during August 23-28, 2020. The conference was held virtually due to the COVID-19 pandemic. The 1360 revised papers presented in these proceedings were carefully reviewed and selected from a total of 5025 submissions. The papers deal with topics such as computer vision; machine learning; deep neural networks; reinforcement learning; object recognition; image classification; image processing; object detection; semantic segmentation; human pose estimation; 3d reconstruction; stereo vision; computational photography; neural networks; image coding; image reconstruction; object recognition; motion estimation.
Book Synopsis Algorithmic Aspects in Information and Management by : Bo Chen
Download or read book Algorithmic Aspects in Information and Management written by Bo Chen and published by Springer. This book was released on 2010-06-26 with total page 345 pages. Available in PDF, EPUB and Kindle. Book excerpt: While the areas of information management and management science are full of algorithmic challenges, the proliferation of data has called for the design of e?cient and e?ective algorithms and data structures for their management and processing. The International Conference on Algorithmic Aspects in Information and Management(AAIM) is intended for originalalgorithmicresearchon immediate applications and/or fundamental problems pertinent to information mana- ment and management science to be broadly construed. The conference aims at bringing together researchers in computer science, operations research, applied mathematics, economics, and related disciplines. This volume contains papers presented at AAIM 2010: the 6th International Conference on Algorithmic Aspects in Information and Management, which was held during July 19-21, 2010, in Weihai, China. We received a total of 50 s- missions.Eachsubmissionwasreviewedbythreemembersof the ProgramC- mittee or their deputies on the quality, originality, soundness, and signi?cance of its contribution. The committee decided to accept 31 papers. The program also included two invited keynote talks. The success of the conference resulted from the input of many people. We would like ?rst of all to thank all the members of the Program Committee for their expert evaluation of the submissions. The local organizers in the School of Computer Science and Technology, Shandong University, did an extraordinary job, for which we are very grateful. We thank the National Natural Science Foundation of China, Montana State University (USA), University of Warwick (UK), and Shandong University (China) for their sponsorship.
Book Synopsis International Journal of Bioinformatics Research and Applications by :
Download or read book International Journal of Bioinformatics Research and Applications written by and published by . This book was released on 2005 with total page 542 pages. Available in PDF, EPUB and Kindle. Book excerpt:
Download or read book Ant Algorithms written by Marco Dorigo and published by Springer Science & Business Media. This book was released on 2002-08-28 with total page 318 pages. Available in PDF, EPUB and Kindle. Book excerpt: This book constitutes the refereed proceedings of the Third International Workshop on Ant Algorithms, ANTS 2002, held in Brussels, Belgium in September 2002. The 17 revised full papers, 11 short papers, and extended poster abstracts presented were carefully reviewed and selected from 52 submissions. The papers deal with theoretical and foundational aspects and a variety of new variants of ant algorithms as well as with a broad variety of optimization applications in networking and operations research. All in all, this book presents the state of the art in research and development in the emerging field of ant algorithms
